BAC Information

Click to search

BAC

Clone NameB6Ng01-182F14
Chromosome16 (Build37)
Map Location 83,075,672 - 83,220,850
singlet/doubletdoublet
Overlap genenone
Upstream geneEG665260
Downstream geneEG545172, LOC100039572, EG621729
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-182F14.bB6Ng01-182F14.g
ACCGA008265GA008266
length1,1201,042
definitionB6Ng01-182F14.b B6Ng01-182F14.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(83,075,672 - 83,076,795)(83,219,807 - 83,220,850)
sequence
gaattcaacaatgctattgctgttctcatgggccttgtctcctctattgt
tagctatcaaagatttgctatttattatatgaaattcacggctttgttat
ggtagtttaaatcacctataacatatttctctgtggttaatgctcttcat
aataattgtgttttttctccatcaactatatttaaccatggtaatgacac
ttttaactttcccataaatgttaggtgtttgccatgctcatcttttaagt
tttttttttcctgtatatatcacttactttggcaattgtatttattctat
atgttttgctacatttttttcattactattctttgaaaaagtttaatttt
ctagcatcaagggaaagccaatatttattgatttggatggttaaaacaca
aagataaagcaataaattttcttactaaaaaacactgtctcatctgcttt
attttatatggtctatcttgagattgtaattttattattactatgtttat
tactattgttaatattattattagaatataaaaaaatctaatgctagttc
aactatgatgtcagtctattcatgtcttataggtattttaactatcataa
aattcattaattttatttttgggtgatctaagacattttgttcataagag
aatttttatataaatcatatatacaatgtatatgatatagaaaaatatta
tttaagtaatatgcaaacacaatgcctttatttctgctgtaagaaaactt
ttaaatttacacaacccactaacgtatatgaacatagatgtccaaaatag
ggaaaatgacaaaatgtcaaaattaagggaaaaataattctagaagaaca
tgacagcaataaaattaattgtcactgtttttaggtgatacctatatgaa
tcaataattatccattatattcttggcattatcttatcatcatttagtat
gcctgaaaagagggaggagcaatgtacctactttttcacttccatgcaca
gtaactttctaggaatgagcccatttgtaagaacacacagagtccaggac
caatagaggtctctaattgttgctacttattcaagccagtaaataaatgg
atcagtatgtcctaacttct

gaggtctagctgtagacatcagcacatgactcttctgagaatatcttttc
attaaaactcttggcataattactccatcaatgggcagatgacacaacag
aatttagcagccacagttctttatttttataattaagtttgtggttgttt
gaaaaggtatggacccccacagattcatgtatttaaatgcttaacttata
agggagtggtactactaggaagcacggccttgttagaataagtgtatttc
tttggacatggactttgaggtctcccatgatggcccaagttaccccccaa
gtgacacacagtctctgcatgtggcagatcaagatgcagatcactcagat
tcttctccagcaccatgtctgactgcactatgccattcttcccacaatga
tgataatagactaacgtctgaaatgataagtcaactccaaataagcatgt
tgcttattaaaaaaaaattgccttggtcatggtgtctcctcatagcaatg
agaccctaaccaagacacattttgatctaatttcatgcacattaactcat
taactccaacctgttatcttcaacctgttaacaacgaaccactaatacta
aaccttacatgaataacaaggcttatgagagtacttgaaatcgaggaata
tatttgatggatgttaaaacagatccttgttcattttactggcttcccat
tactctcagataggtagactatccataattcaacaatcaaacaataaact
cctgagaactttttctactgaaaccaaaagtaaaactatcagaaaattct
tactggaagaggactatccagcagcagtcattgtttgttttttttttttg
tgtgtgtgtgtttgtttgctttgttgccttgctttgtttgtttaatcaac
attggaatgtattctcatagctaatgtgtggaatgtgtaatacaccagaa
aaaacaaatatatttcagaactcccagacttttaatgtcaaaaagtctcc
ttcaaccaatattttttcttgaatttttgatgatgactcctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_83075672_83076795
seq2: B6Ng01-182F14.b_45_1164

seq1  GAATTCAACAATGCTATTGCTGTTCTCATGGGCCTTGTCTCCTCTATTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAACAATGCTATTGCTGTTCTCATGGGCCTTGTCTCCTCTATTGT  50

seq1  TAGCTATCAAAGATTTGCTATTTATTATATGAAATTCACGGCTTTGTTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTATCAAAGATTTGCTATTTATTATATGAAATTCACGGCTTTGTTAT  100

seq1  GGTAGTTTAAATCACCTATAACATATTTCTCTGTGGTTAATGCTCTTCAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGTTTAAATCACCTATAACATATTTCTCTGTGGTTAATGCTCTTCAT  150

seq1  AATAATTGTGTTTTTTCTCCATCAACTATATTTAACCATGGTAATGACAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATTGTGTTTTTTCTCCATCAACTATATTTAACCATGGTAATGACAC  200

seq1  TTTTAACTTTCCCATAAATGTTAGGTGTTTGCCATGCTCATCTTTTAAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAACTTTCCCATAAATGTTAGGTGTTTGCCATGCTCATCTTTTAAGT  250

seq1  TTTTTTTTTCCTGTATATATCACTTACTTTGGCAATTGTATTTATTCTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTCCTGTATATATCACTTACTTTGGCAATTGTATTTATTCTAT  300

seq1  ATGTTTTGCTACATTTTTTTCATTACTATTCTTTGAAAAAGTTTAATTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTTTGCTACATTTTTTTCATTACTATTCTTTGAAAAAGTTTAATTTT  350

seq1  CTAGCATCAAGGGAAAGCCAATATTTATTGATTTGGATGGTTAAAACACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCATCAAGGGAAAGCCAATATTTATTGATTTGGATGGTTAAAACACA  400

seq1  AAGATAAAGCAATAAATTTTCTTACTAAAAAACACTGTCTCATCTGCTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATAAAGCAATAAATTTTCTTACTAAAAAACACTGTCTCATCTGCTTT  450

seq1  ATTTTATATGGTCTATCTTGAGATTGTAATTTTATTATTACTATGTTTAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTATATGGTCTATCTTGAGATTGTAATTTTATTATTACTATGTTTAT  500

seq1  TACTATTGTTAATATTATTATTAGAATATAAAAAAATCTAATGCTAGTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTATTGTTAATATTATTATTAGAATATAAAAAAATCTAATGCTAGTTC  550

seq1  AACTATGATGTCAGTCTATTCATGTCTTATAGGTATTTTAACTATCATAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTATGATGTCAGTCTATTCATGTCTTATAGGTATTTTAACTATCATAA  600

seq1  AATTCATTAATTTTATTTTTGGGTGATCTAAGACATTTTGTTCATAAGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCATTAATTTTATTTTTGGGTGATCTAAGACATTTTGTTCATAAGAG  650

seq1  AATTTTTATATAAATCATATATACAATGTATATGATATAGAAAAATATTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTTATATAAATCATATATACAATGTATATGATATAGAAAAATATTA  700

seq1  TTTAAGTAATATGCAAACACAATGCCTTTATTTCTGCTGTAAGAAAACTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAGTAATATGCAAACACAATGCCTTTATTTCTGCTGTAAGAAAACTT  750

seq1  TTAAATTTACACAACCCACTAACGTATATGAACATAGATGTCCAAAATAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATTTACACAACCCACTAACGTATATGAACATAGATGTCCAAAATAG  800

seq1  GGAAAATGACAAAATGTCAAAATTAAGGGAAAAATAA-TCTAGAAGAACA  849
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  GGAAAATGACAAAATGTCAAAATTAAGGGAAAAATAATTCTAGAAGAACA  850

seq1  TGACAGCAATAAAATTAATTGTCACTGTTTTTAGGTGATACCTATATGAA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAGCAATAAAATTAATTGTCACTGTTTTTAGGTGATACCTATATGAA  900

seq1  TCAATAATTATCCA-TATA-TCTTGGCATTATCTTATCATCA-TTAGTAT  946
      |||||||||||||| |||| |||||||||||||||||||||| |||||||
seq2  TCAATAATTATCCATTATATTCTTGGCATTATCTTATCATCATTTAGTAT  950

seq1  GCCTGAAAAGAGGGA-GAGCAATGTACCTACTTTTTCACTTCCATGCACA  995
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  GCCTGAAAAGAGGGAGGAGCAATGTACCTACTTTTTCACTTCCATGCACA  1000

seq1  GTAAACTTTCTAGGAATGGAGCCCATTTGTAAG-ACACACAGAGCCCAGG  1044
      || |||||||||||||| ||||||||||||||| |||||||||| |||||
seq2  GT-AACTTTCTAGGAAT-GAGCCCATTTGTAAGAACACACAGAGTCCAGG  1048

seq1  ACCCATAGAGGTCTCCAAATTGTTTGCTACTTATTTAAAGGCAAGTAAAT  1094
      ||| |||||||||| | ||||| |||||||||||| ||  || |||||||
seq2  ACCAATAGAGGTCT-CTAATTG-TTGCTACTTATTCAA--GCCAGTAAAT  1094

seq1  AAAATGGATCATGTAATGTCTTTAACTTCT  1124
       |||||||||| || |||||  ||||||||
seq2  -AAATGGATCA-GT-ATGTC-CTAACTTCT  1120


seq1: chr16_83219807_83220850
seq2: B6Ng01-182F14.g_76_1117 (reverse)

seq1  AAGGAGTCATCAATAGAAAATTCAGAAAAAAATATTGTTTGA--GGGACT  48
      ||||||||||| ||  ||||||||  ||||||||||| ||||  | ||||
seq2  AAGGAGTCATC-ATCAAAAATTCAAGAAAAAATATTGGTTGAAGGAGACT  49

seq1  TTTGTGACATAAAAAG-CTGGGATGTCTG-AATATATTTG-TTTTTCT-G  94
      ||| |||||| ||||| ||||||  |||| |||||||||| ||||||| |
seq2  TTT-TGACATTAAAAGTCTGGGAGTTCTGAAATATATTTGTTTTTTCTGG  98

seq1  TGTATTACACAT--CACACAATAGCTATGAGAATACA-TCCAATG-TGAT  140
      ||||||||||||  |||||| |||||||||||||||| ||||||| ||||
seq2  TGTATTACACATTCCACACATTAGCTATGAGAATACATTCCAATGTTGAT  148

seq1  AAAAACAAAACAAAGCAAAGCAAAACAAAACAAAACAAACAACAACAACA  190
       |||   ||||||||||| ||       |||||| |||||||  || |||
seq2  TAAA--CAAACAAAGCAAGGC-------AACAAAGCAAACAAACAC-ACA  188

seq1  ACAACAAAAAAAAAAACAAAACAATGACTGCTGCTGGATAGTCCTCTTCC  240
         |||||||||||||  ||||||||||||||||||||||||||||||||
seq2  CACACAAAAAAAAAAAACAAACAATGACTGCTGCTGGATAGTCCTCTTCC  238

seq1  AGTAAGAATTTTCTGATAGTTTTACTTTTGGTTTCAGTAGAAAAAGTTCT  290
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAGAATTTTCTGATAGTTTTACTTTTGGTTTCAGTAGAAAAAGTTCT  288

seq1  CAGGAGTTTATTGTTTGATTGTTGAATTATGGATAGTCTACCTATCTGAG  340
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAGTTTATTGTTTGATTGTTGAATTATGGATAGTCTACCTATCTGAG  338

seq1  AGTAATGGGAAGCCAGTAAAATGAACAAGGATCTGTTTTAACATCCATCA  390
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAATGGGAAGCCAGTAAAATGAACAAGGATCTGTTTTAACATCCATCA  388

seq1  AATATATTCCTCGATTTCAAGTACTCTCATAAGCCTTGTTATTCATGTAA  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATATTCCTCGATTTCAAGTACTCTCATAAGCCTTGTTATTCATGTAA  438

seq1  GGTTTAGTATTAGTGGTTCGTTGTTAACAGGTTGAAGATAACAGGTTGGA  490
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTAGTATTAGTGGTTCGTTGTTAACAGGTTGAAGATAACAGGTTGGA  488

seq1  GTTAATGAGTTAATGTGCATGAAATTAGATCAAAATGTGTCTTGGTTAGG  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAATGAGTTAATGTGCATGAAATTAGATCAAAATGTGTCTTGGTTAGG  538

seq1  GTCTCATTGCTATGAGGAGACACCATGACCAAGGCAATTTTTTTTTAATA  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCATTGCTATGAGGAGACACCATGACCAAGGCAATTTTTTTTTAATA  588

seq1  AGCAACATGCTTATTTGGAGTTGACTTATCATTTCAGACGTTAGTCTATT  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAACATGCTTATTTGGAGTTGACTTATCATTTCAGACGTTAGTCTATT  638

seq1  ATCATCATTGTGGGAAGAATGGCATAGTGCAGTCAGACATGGTGCTGGAG  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATCATTGTGGGAAGAATGGCATAGTGCAGTCAGACATGGTGCTGGAG  688

seq1  AAGAATCTGAGTGATCTGCATCTTGATCTGCCACATGCAGAGACTGTGTG  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATCTGAGTGATCTGCATCTTGATCTGCCACATGCAGAGACTGTGTG  738

seq1  TCACTTGGGGGGTAACTTGGGCCATCATGGGAGACCTCAAAGTCCATGTC  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTTGGGGGGTAACTTGGGCCATCATGGGAGACCTCAAAGTCCATGTC  788

seq1  CAAAGAAATACACTTATTCTAACAAGGCCGTGCTTCCTAGTAGTACCACT  840
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGAAATACACTTATTCTAACAAGGCCGTGCTTCCTAGTAGTACCACT  838

seq1  CCCTTATAAGTTAAGCATTTAAATACATGAATCTGTGGGGGTCCATACCT  890
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTATAAGTTAAGCATTTAAATACATGAATCTGTGGGGGTCCATACCT  888

seq1  TTTCAAACAACCACAAACTTAATTATAAAAATAAAGAACTGTGGCTGCTA  940
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAAACAACCACAAACTTAATTATAAAAATAAAGAACTGTGGCTGCTA  938

seq1  AATTCTGTTGTGTCATCTGCCCATTGATGGAGTAATTATGCCAAGAGTTT  990
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTGTTGTGTCATCTGCCCATTGATGGAGTAATTATGCCAAGAGTTT  988

seq1  TAATGAAAAGATATTCTCAGAAGAGTCATGTGCTGATGTCTACAGCTAGA  1040
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGAAAAGATATTCTCAGAAGAGTCATGTGCTGATGTCTACAGCTAGA  1038

seq1  CCTC  1044
      ||||
seq2  CCTC  1042


| Home | SequenceCutter | Blast | Download |