BAC Information

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BAC

Clone NameB6Ng01-182N06
Chromosome16 (Build37)
Map Location 89,361,401 - 89,419,081
singlet/doubletdoublet
Overlap geneLOC100040456, Krtap21-1
Upstream geneEG622373, Cldn17, Cldn8, Gm312, 2310079G19Rik, 2310002B14Rik, EG665513, 2310061N02Rik, Krtap13-1, Krtap13, 2310034C09Rik, 2310057N15Rik, EG546672, EG433047, 4930553J12Rik, Krtap14, Krtap15, Krtap16-9, Krtap16-1, Krtap16-5, Krtap16-4, Krtap8-2, LOC100040191, AY026312, Krtap16-10, EG621595, LOC100040167, 1110032D16Rik, LOC100040201, Krtap6-1, LOC100040214, Krtap16-8, 1110025L11Rik, LOC100040249, LOC100040267, EG622794, LOC100040281, ENSMUSG00000044227, EG665661, LOC100040288, EG622935, EG622981, EG622998, EG623011, EG623026, LOC100040346, EG623049, LOC100040415, EG640636, LOC640652, LOC640654, LOC100040425, LOC100040374, LOC640656, LOC100040445
Downstream geneKrtap6-2, 5430433J05Rik, Tiam1, LOC100040496, LOC640694, LOC100040440, Sod1, Sfrs15, LOC545175, Hunk
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-182N06.bB6Ng01-182N06.g
ACCGA008615GA008616
length941784
definitionB6Ng01-182N06.b B6Ng01-182N06.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(89,418,476 - 89,419,081)(89,361,401 - 89,362,184)
sequence
gaattcagtcaagtgagctgattcactgaaacagcaagtatttttgaata
ggtcacagcctggatacaatcaaagtattacagatgaattatatggtctc
cgtgtgtttgcatcacgatcaagaggacagcaagctaggaaagcgtgatg
atacaactgcagcagatgcagctcagtgggaaggggaggatacatcagca
tgtctgtctgttcagggagggactttgaacctgtattctttgagataata
ctgaaaagatgacagtagcaaagaaaatttactaaataatgttaaggaga
aaacaaagtttcttacattttaggaccaggtgaagatgacaaaaatcaat
ggccagacccggatatagaatatttgaagtgtggcaagaatgaaatgaag
tgcaaaataaaataccaactgccaaacactaagtcagtgggattcgtctg
ggatgggattagatatgacaatggtattaattaattaactaattaattaa
tttcttttattattttttcttttgtttaaaatagcttttttcctcacata
atatatccagattatattccccccctctctactccttccactactccttc
cactttcttcccaccattgcccctcccatctggatccacaccctgtcatt
agaataaaacagattttaaaaggataataatataataaatataatatgat
aaaacaaaaataaatatgttgaaattggacaaagtaaactaacagatatg
aaagagctcaagaaaaatataaggaacagatataaacacagaaattcaac
tgttcacatattcaggatcccataaaaacatgaaactggaagccataata
tatatgccaagtactcataggataagaaagagcaagagagagggagtcag
atacagaggcaaagagacacacactgagaaagaaagagaca
gaattcaggggtgaccagtgagccataaactggctatgagttaggatggt
ataacaatttataatggaacttggtgctatgattcttgttctcaaataaa
atgaacgtgcttgttttatctatttgtatgactttgtaaataagataatg
aaaacacatctagcttttaatgttacattttcaaactttactatatagat
acttccaaatctggatagacagacaagagatgaggaaatacttagaattt
aggatgctaccacatatgtcctattctacacaaagtgaaacaaagaaatg
aaataaaaacaaaatagaaagaacaaagtcagacagcttaaatcagaggt
tgacacttctcaggtattgtcaaatattgtggatgtcaacaagtcactta
gaaagcaataacaaaggaaaatatttggcaacagaaacaaaatgctaatc
ttatttaaatgtcactgtaagttgggcattgtgctctatgcaaagtatga
acgtctcattgaaggagatgatagtcctgcaaggtcaatattttgaatgt
ttttgttaaaagaagaagaaacagaatatgggagctttctgaaggttgca
gataacgaatggaaattgggaacccatggctctgtgtctccatagccatt
tgctttttaagagagcagtctgggcacccttgcctctcttagccctccag
gacaattgttatgtatgcacacacaattaatttaaaaataagatgtcaag
agggaagagaatgggatgggtgataatgaattgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_89418476_89419081
seq2: B6Ng01-182N06.b_46_651 (reverse)

seq1  AAAGTGGAAGGAGTAGTGGAAGGAGTAGAGAGGGGGGGAATATAATCTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTGGAAGGAGTAGTGGAAGGAGTAGAGAGGGGGGGAATATAATCTGG  50

seq1  ATATATTATGTGAGGAAAAAAGCTATTTTAAACAAAAGAAAAAATAATAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATTATGTGAGGAAAAAAGCTATTTTAAACAAAAGAAAAAATAATAA  100

seq1  AAGAAATTAATTAATTAGTTAATTAATTAATACCATTGTCATATCTAATC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAATTAATTAATTAGTTAATTAATTAATACCATTGTCATATCTAATC  150

seq1  CCATCCCAGACGAATCCCACTGACTTAGTGTTTGGCAGTTGGTATTTTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCCCAGACGAATCCCACTGACTTAGTGTTTGGCAGTTGGTATTTTAT  200

seq1  TTTGCACTTCATTTCATTCTTGCCACACTTCAAATATTCTATATCCGGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCACTTCATTTCATTCTTGCCACACTTCAAATATTCTATATCCGGGT  250

seq1  CTGGCCATTGATTTTTGTCATCTTCACCTGGTCCTAAAATGTAAGAAACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCCATTGATTTTTGTCATCTTCACCTGGTCCTAAAATGTAAGAAACT  300

seq1  TTGTTTTCTCCTTAACATTATTTAGTAAATTTTCTTTGCTACTGTCATCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTTCTCCTTAACATTATTTAGTAAATTTTCTTTGCTACTGTCATCT  350

seq1  TTTCAGTATTATCTCAAAGAATACAGGTTCAAAGTCCCTCCCTGAACAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGTATTATCTCAAAGAATACAGGTTCAAAGTCCCTCCCTGAACAGA  400

seq1  CAGACATGCTGATGTATCCTCCCCTTCCCACTGAGCTGCATCTGCTGCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACATGCTGATGTATCCTCCCCTTCCCACTGAGCTGCATCTGCTGCAG  450

seq1  TTGTATCATCACGCTTTCCTAGCTTGCTGTCCTCTTGATCGTGATGCAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTATCATCACGCTTTCCTAGCTTGCTGTCCTCTTGATCGTGATGCAAA  500

seq1  CACACGGAGACCATATAATTCATCTGTAATACTTTGATTGTATCCAGGCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACGGAGACCATATAATTCATCTGTAATACTTTGATTGTATCCAGGCT  550

seq1  GTGACCTATTCAAAAATACTTGCTGTTTCAGTGAATCAGCTCACTTGACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACCTATTCAAAAATACTTGCTGTTTCAGTGAATCAGCTCACTTGACT  600

seq1  GAATTC  606
      ||||||
seq2  GAATTC  606

seq1: chr16_89361401_89362184
seq2: B6Ng01-182N06.g_68_851

seq1  GAATTCAGGGGTGACCAGTGAGCCATAAACTGGCTATGAGTTAGGATGGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGGGTGACCAGTGAGCCATAAACTGGCTATGAGTTAGGATGGT  50

seq1  ATAACAATTTATAATGGAACTTGGTGCTATGATTCTTGTTCTCAAATAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACAATTTATAATGGAACTTGGTGCTATGATTCTTGTTCTCAAATAAA  100

seq1  ATGAACGTGCTTGTTTTATCTATTTGTATGACTTTGTAAATAAGATAATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAACGTGCTTGTTTTATCTATTTGTATGACTTTGTAAATAAGATAATG  150

seq1  AAAACACATCTAGCTTTTAATGTTACATTTTCAAACTTTACTATATAGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACACATCTAGCTTTTAATGTTACATTTTCAAACTTTACTATATAGAT  200

seq1  ACTTCCAAATCTGGATAGACAGACAAGAGATGAGGAAATACTTAGAATTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCCAAATCTGGATAGACAGACAAGAGATGAGGAAATACTTAGAATTT  250

seq1  AGGATGCTACCACATATGTCCTATTCTACACAAAGTGAAACAAAGAAATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATGCTACCACATATGTCCTATTCTACACAAAGTGAAACAAAGAAATG  300

seq1  AAATAAAAACAAAATAGAAAGAACAAAGTCAGACAGCTTAAATCAGAGGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAAAACAAAATAGAAAGAACAAAGTCAGACAGCTTAAATCAGAGGT  350

seq1  TGACACTTCTCAGGTATTGTCAAATATTGTGGATGTCAACAAGTCACTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACACTTCTCAGGTATTGTCAAATATTGTGGATGTCAACAAGTCACTTA  400

seq1  GAAAGCAATAACAAAGGAAAATATTTGGCAACAGAAACAAAATGCTAATC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGCAATAACAAAGGAAAATATTTGGCAACAGAAACAAAATGCTAATC  450

seq1  TTATTTAAATGTCACTGTAAGTTGGGCATTGTGCTCTATGCAAAGTATGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTAAATGTCACTGTAAGTTGGGCATTGTGCTCTATGCAAAGTATGA  500

seq1  ACGTCTCATTGAAGGAGATGATAGTCCTGCAAGGTCAATATTTTGAATGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTCTCATTGAAGGAGATGATAGTCCTGCAAGGTCAATATTTTGAATGT  550

seq1  TTTTGTTAAAAGAAGAAGAAACAGAATATGGGAGCTTTCTGAAGGTTGCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTTAAAAGAAGAAGAAACAGAATATGGGAGCTTTCTGAAGGTTGCA  600

seq1  GATAACGAATGGAAATTGGGAACCCATGGCTCTGTGTCTCCATAGCCATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAACGAATGGAAATTGGGAACCCATGGCTCTGTGTCTCCATAGCCATT  650

seq1  TGCTTTTTAAGAGAGCAGTCTGGGCACCCTTGCCTCTCTTAGCCCTCCAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTTTAAGAGAGCAGTCTGGGCACCCTTGCCTCTCTTAGCCCTCCAG  700

seq1  GACAATTGTTATGTATGCACACACAATTAATTTAAAAATAAGATGTCAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAATTGTTATGTATGCACACACAATTAATTTAAAAATAAGATGTCAAG  750

seq1  AGGGAAGAGAATGGGATGGGTGATAATGAATTGG  784
      ||||||||||||||||||||||||||||||||||
seq2  AGGGAAGAGAATGGGATGGGTGATAATGAATTGG  784