BAC Information

Click to search

BAC

Clone NameB6Ng01-184E03
Chromosome16 (Build37)
Map Location 18,865,555 - 18,866,288
singlet/doubletsinglet
Overlap genenone
Upstream geneDgcr2, Tssk1, Tssk2, Es2el, Gscl, Slc25a1, Vpreb2, Dgcr6, Prodh, Rtn4r, EG665975, Zdhhc8, Ranbp1, Htf9c, Dgcr8, D16H22S680E, LOC100042884, Arvcf, Comt, Txnrd2, Gnb1l, Tbx1, Gp1bb, Sept5, LOC622795, Cldn5, Cdc45l, Ufd1l, 2510002D24Rik
Downstream geneMrpl40, Hira, Igl, Igl-C1, Igl-J1, Igl-C3, Igl-J3p, Igl-J3, Igl-V1, Igl-C4, Igl-J4, Igl-C2, Igl-J2, Igl-V3, Igl-V2, Olfr164, Olfr165, Olfr166, Olfr167, Olfr168, Olfr169, Olfr170, Olfr171, LOC100043444, Lamp3, B3gnt5, LOC100042935
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-184E03.bB6Ng01-184E03.g
ACCGA009679GA009680
length1,168740
definitionB6Ng01-184E03.b B6Ng01-184E03.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcacctgaggaataccgaatggcagagaagcacttgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaacccagagat
tccacctcacaccagtcagaatggctaagatcaaaaactcaggtgacagc
agatgctggcgaggatgtggagaaagaggaacactcctccattgttggtg
ggagtgcaggcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaactggacatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagatgccccaacaggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaagaacctagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagggcatcatcctgagtgaggtaacacattcacaaa
gaaactcacacaatatgtattcactgataagtggatattagccccaaacc
taggatacccaagatataagatataatttgctaaacacatgaaactcaag
aagaatgaagactgaagtgtggacactatgcccctccttagatttgggaa
caaaacacccatggaaggagttacagagacggagtttggagctgagatga
aaggatggaccatgtagagactgccatagccagggatccaccccataatc
agcatccaaacgctgacaccattgcatacactagcaagattttattgaaa
ggacgcagatgtagctgtctcttgtgagactatgccggggcccagcaaac
acagaagtggatgctcacagtcagctaatggatggatcatagggctccca
atggaggagctagagaaagtagccaggagctaaagggatctgcaccctat
agtggacacattatgagctaaccagtaccccggagctctgactctagctg
catattatatccagatgggctagtcgcatcactgggaagagaagcccatt
ggacttgcaactttaattgcccaagtacaggaacaccaggcaaaaggggg
aatgggttggccagagga
gaattcattttgtagaccattgctggcctcaaactcaaaaatccgcctgc
ctctgcctctcgagtgctggaattaaaggtgtgtgccatcaccacccagc
cagtttggtattcttaactaatatacattgttaagtgaagcttgagtgga
aactaaacactttaaaataagccttgattagacatacctaactgtactat
tgcttgaccctctggaagcactcatggtgattttctattaagaagaaagt
actatctaaattaggagatcctattcacaattcatcatatgtaaattagg
tttaagtccctataatctagagggtagtcaattaaaaacaagcagaacaa
aaacatttaaaaacatttagaaggtgattgtataaactgaggaaaactat
actccatggtatagcttattgtagatatgagagagagacagacagagaca
gacaaagacagagacagagaacgaacagccagaggcatctagaagagtcc
ggagcagagagagaaaatagtagactaaaaatggccagcaaactgggctt
ggccatgagagaagccaggagcaacgcacagagaaggaaagaaagttggg
gagagcaagagatgaagacaaaagagagtggcatagccagaatagcaggg
ttacaaggaaatgagcagctggggggaggggaagcctatgagcttggaga
agtttaggatagggaaggaaggtgtgaaaaattctaggat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_18865555_18866288
seq2: B6Ng01-184E03.g_68_807

seq1  GAATTCATTTTGTAGACCA-GGCTGGCCTCAAACTCAAAAATCCGCCTGC  49
      |||||||||||||||||||  |||||||||||||||||||||||||||||
seq2  GAATTCATTTTGTAGACCATTGCTGGCCTCAAACTCAAAAATCCGCCTGC  50

seq1  CTCTGCCTCTCGAGTGCTGGAATTAAAGGTGTGTGCCATCACCACCCAGC  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGCCTCTCGAGTGCTGGAATTAAAGGTGTGTGCCATCACCACCCAGC  100

seq1  CAGTTTGGTATTCTTAACTAATATACATTGTTAAGTGAAGCTTGAGTGGA  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTTGGTATTCTTAACTAATATACATTGTTAAGTGAAGCTTGAGTGGA  150

seq1  AACTAAACACTTTAAAATAAGCCTTGATTAGACATACCTAACTGTACTAT  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAAACACTTTAAAATAAGCCTTGATTAGACATACCTAACTGTACTAT  200

seq1  TGCTTGACCCTCTGGAAGCACTCATGGTGATTTTCTATTAAGAAGAAAGT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTGACCCTCTGGAAGCACTCATGGTGATTTTCTATTAAGAAGAAAGT  250

seq1  ACTATCTAAATTAGGAGATCCTATTCACAATTCATCATATGTAAATTAGG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATCTAAATTAGGAGATCCTATTCACAATTCATCATATGTAAATTAGG  300

seq1  TTTAAGTCCCTATAATCTAGAGGGTAGTCAATTAAAAACAAGCAGAACAA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAGTCCCTATAATCTAGAGGGTAGTCAATTAAAAACAAGCAGAACAA  350

seq1  AAACATTTAAAAACATTTAGAAGGTGATTGTATAAACTGAGGAAAACTAT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATTTAAAAACATTTAGAAGGTGATTGTATAAACTGAGGAAAACTAT  400

seq1  ACTCCATGGTATAGCTTATTGTAGATATGAGAGAGAGACAGACAGAGACA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCATGGTATAGCTTATTGTAGATATGAGAGAGAGACAGACAGAGACA  450

seq1  GACAAAGACAGAGACAGAGAACGAACAGCCAGAGGCATCTAGAAGAGTCC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAAGACAGAGACAGAGAACGAACAGCCAGAGGCATCTAGAAGAGTCC  500

seq1  GGAGCAGAGAGAGAAAATAGTAGACTAAAAATGGCCAGCAAACTGGGCTT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCAGAGAGAGAAAATAGTAGACTAAAAATGGCCAGCAAACTGGGCTT  550

seq1  GGCCATGAGAGAAGCCAGGAGCAACGCACAGAGAAGGAAAGAAAGTTGGG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCATGAGAGAAGCCAGGAGCAACGCACAGAGAAGGAAAGAAAGTTGGG  600

seq1  GAGAGCAAGAGATGAAGAC-AAAGAGAGTGGCATAGCCAGAATAGCAGGG  648
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  GAGAGCAAGAGATGAAGACAAAAGAGAGTGGCATAGCCAGAATAGCAGGG  650

seq1  TTACAAGGAAAATGAGCAGCTGGGGGGA-GGGAAGCCTATGAGC-TGGAG  696
      |||||||| ||||||||||||||||||| ||||||||||||||| |||||
seq2  TTACAAGG-AAATGAGCAGCTGGGGGGAGGGGAAGCCTATGAGCTTGGAG  699

seq1  AAGTTTAGGATAGGGAAGG-AGGTGTGAAAA--TCTAGGAT  734
      ||||||||||||||||||| |||||||||||  ||||||||
seq2  AAGTTTAGGATAGGGAAGGAAGGTGTGAAAAATTCTAGGAT  740