BAC Information

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BAC

Clone NameB6Ng01-184H07
Chromosome16 (Build37)
Map Location 24,213,657 - 24,214,736
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043541, BC106179, St6gal1, Rtp1, Masp1, LOC100043018, Rtp4, EG625969, LOC100043023, Sst, Rtp2, Bcl6, EG433009
Downstream geneLOC666580, LOC100043564, 1110054M08Rik, Lpp, A730098P11Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-184H07.bB6Ng01-184H07.g
ACCGA009828GA009829
length1,2391,123
definitionB6Ng01-184H07.b B6Ng01-184H07.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctctatttaggcttgtaccccatttttaatagcactatttggttg
gctattgtctagtttcttgagttctttacatattttgaagttgagttgtt
aaaaatcttttcccattctgtaggttgccattttgtcctattgaaagtgt
cctttatattgcacaaactttttagttccatggggttccatttattaatt
actgatcttagtgtctgagtgattggtgttctgttcaggaagttgtctcc
tgtgccaatgagttcaaggctgcttcttacttactgttctgccaggttcg
ttgtatctggtttatgttgaagtctttgattcacttggacttgagttttg
tgcaggatgatatatatggacctagttgtattcttctacatgtggacata
cagttagaccagcgccatttgttaaaaatgatttcttattgtttttcatt
gtatattcctggcttctttatcaaactcaggtgtccataggatcatggat
ttatgcctggttcttagagtctattttgttggtcaacctgtctgttttca
ccccaatgccatgcagtttttatcactattgctctgtaatacagcttgag
gtcagggatagttatatgtccagatgttcttttattgtacagggttgttt
tagctatccttaccttttgttcttctctatgaagttgagtattgctcttc
cagggtctgtaaagtgttaagattttgatgaggactgcattaaatctgta
tatggctttttttttgtaagatgaacatttttacatatgttttttactat
gttttacagtcttacctatccatgaacaatggagatctttccatctcctt
atatcttcttcaacttccttcttcatagacttgaagtttatatcatatag
atctttcacttgcttggttagagttaccccaagattattttatactattt
gtggctattgtgaagagaattggttttctgatttctatccttagcactct
tgtcattgtatatatgagggcctacttttttttttgaggtccgtctaata
tccagccagtttgttggaaggtgtttattagcttgcaggccgtcccctga
tagactcttgagaacactcgtggcatacctcctcatgaactccctcaatc
ttacactcacatcctccacgcatggattagcatggaaagaggggcttgca
tacttgtctccccatgtggagtcacctttgttgtgcctg
gaattctagacttacatcccatcttgaacactgatccttgtatatgatgt
actttggctccatgctgaagactgtttgaaccccttggaaggcagtgcct
agaaatgaagataaatggaggtaattttctcttctatccaaagcctgttt
ttcttttagatatatgtaggcatggaaatgaaatgccacacatgtccact
agagacagtttcaactcctgggttctgtgtgtgcatagacatggtcagtt
aaagctacaacacccctttcaacatcaacactccagtgcttggtgtcttg
tgtctatgtgcaatttgtatgtagtcattttttatttgtgccaggctcgt
taccggggcatgtgttctattttactccaggagaagacgctgatgcatga
aggtccaaacaaaaaacaaaaaacaaaaaacaaaaaacaaaaaacaaaaa
caaaacccaagaatgaaaaacgatgtaaaaccaaagaccagggcttcagc
agttgcttcttaggatgaactcaagggcatgacccaacaactgagtccaa
gggagtggggaaagtgtggctggcttccagaccattctgtcctgttagtt
ctctggcttacttatcatctgactccttttgttaaaggtcatcattctga
aacattattctgtgctgctcttccctgtgtccactactctctcaacacac
acacacacacacacacacacacacacctagttacatttcagattcagcct
taacactaatccttcaaagggtctttttccaccacctccctttcttaaaa
ataccagccacctattccatggacttaccccaccacttttcatgggtatt
ccacaatttttcaaaaccattttcaagacccctttcttcgcttgtttagg
ccacccccctcaacaaagccctagctaaacatctggaaaccagaatatca
ttacaactcgaataacttgactacgtggtcttggaagacaagtattccaa
aacctggtagccaattcatcttcttgttaaccaggtgcctttaaaagcct
tcatttcaatcaacttatcaacctgttccttgactgtccctttcatggtc
taacctggacagttggaacatgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_24213657_24214736
seq2: B6Ng01-184H07.g_66_1188

seq1  GAATTCTAGACTTACATCCCATCTTGAACACTGATCCTTGTATATGATGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAGACTTACATCCCATCTTGAACACTGATCCTTGTATATGATGT  50

seq1  ACTTTGGCTCCATGCTGAAGACTGTTTGAACCCCTTGGAAGGCAGTGCCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTGGCTCCATGCTGAAGACTGTTTGAACCCCTTGGAAGGCAGTGCCT  100

seq1  AGAAATGAAGATAAATGGAGGTAATTTTCTCTTCTATCCAAAGCCTGTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATGAAGATAAATGGAGGTAATTTTCTCTTCTATCCAAAGCCTGTTT  150

seq1  TTCTTTTAGATATATGTAGGCATGGAAATGAAATGCCACACATGTCCACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTTAGATATATGTAGGCATGGAAATGAAATGCCACACATGTCCACT  200

seq1  AGAGACAGTTTCAACTCCTGGGTTCTGTGTGTGCATAGACATGGTCAGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGACAGTTTCAACTCCTGGGTTCTGTGTGTGCATAGACATGGTCAGTT  250

seq1  AAAGCTACAACACCCCTTTCAACATCAACACTCCAGTGCTTGGTGTCTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCTACAACACCCCTTTCAACATCAACACTCCAGTGCTTGGTGTCTTG  300

seq1  TGTCTATGTGCAATTTGTATGTAGTCATTTTTTATTTGTGCCAGGCTCGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTATGTGCAATTTGTATGTAGTCATTTTTTATTTGTGCCAGGCTCGT  350

seq1  TACCGGGGCATGTGTTCTATTTTACTCCAGGAGAAGACGCTGATGCATGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCGGGGCATGTGTTCTATTTTACTCCAGGAGAAGACGCTGATGCATGA  400

seq1  AGGTCCAAACAAAAAACAAAAAACAAAAAACAAAAAACAAAAAACAAAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCCAAACAAAAAACAAAAAACAAAAAACAAAAAACAAAAAACAAAAA  450

seq1  CAAAACCCAAGAATGAAAAACGATGTAAAACCAAAGACCAGGGCTTCAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAACCCAAGAATGAAAAACGATGTAAAACCAAAGACCAGGGCTTCAGC  500

seq1  AGTTGCTTCTTAGGATGAACTCAAGGGCATGACCCAACAACTGAGTCCAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGCTTCTTAGGATGAACTCAAGGGCATGACCCAACAACTGAGTCCAA  550

seq1  GGGAGTGGGGAAAGTGTGGCTGGCTTCCAGACCATTCTGTCCTGTTAGTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGTGGGGAAAGTGTGGCTGGCTTCCAGACCATTCTGTCCTGTTAGTT  600

seq1  CTCTGGCTTACTTATCATCTGACTCCTTTTGTT-AAGGTCATCATTCTGA  649
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  CTCTGGCTTACTTATCATCTGACTCCTTTTGTTAAAGGTCATCATTCTGA  650

seq1  AACATTATTCTGTGCTGCTCTTCCCTGTGTCCACTACTCTCTCAACACAC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATTATTCTGTGCTGCTCTTCCCTGTGTCCACTACTCTCTCAACACAC  700

seq1  ACACACACACACACACACACACACACCTAGTTACATTTCAGATTCAGCCT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACACACACACACACCTAGTTACATTTCAGATTCAGCCT  750

seq1  TAACACTAATCCTTCAAAGGGTC-TTTTCCACCACCTCCCTTTCTTAAAA  798
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  TAACACTAATCCTTCAAAGGGTCTTTTTCCACCACCTCCCTTTCTTAAAA  800

seq1  ATACCAGCCACCTATTCCATGGACTTA-CCCACCACTTTTCAT-GGTATT  846
      ||||||||||||||||||||||||||| ||||||||||||||| ||||||
seq2  ATACCAGCCACCTATTCCATGGACTTACCCCACCACTTTTCATGGGTATT  850

seq1  -CACA--TTTTCAAAACCA-TTTCAAGACCCCTT--CTCGC-TGTTTA-G  888
       ||||  |||||||||||| ||||||||||||||   |||| |||||| |
seq2  CCACAATTTTTCAAAACCATTTTCAAGACCCCTTTCTTCGCTTGTTTAGG  900

seq1  CCA-CCCCCTCAACAAAG-CCTAGCT-AACATCTGGAACCAAGAATA-CA  934
      ||| |||||||||||||| ||||||| ||||||||||| | |||||| ||
seq2  CCACCCCCCTCAACAAAGCCCTAGCTAAACATCTGGAAACCAGAATATCA  950

seq1  -TACAAC-CG-ATAAC-TGACTACGT-GTCT--GAAGAACAAGTATT-CA  976
       |||||| || ||||| ||||||||| ||||  |||| ||||||||| ||
seq2  TTACAACTCGAATAACTTGACTACGTGGTCTTGGAAG-ACAAGTATTCCA  999

seq1  AAAC--TGTAG-CAATTCATC-TCTTGTTAGC--AGTGCC-TTAAAAGCC  1019
      ||||   |||| ||||||||| |||||||| |   ||||| |||||||||
seq2  AAACCTGGTAGCCAATTCATCTTCTTGTTAACCAGGTGCCTTTAAAAGCC  1049

seq1  T--CTTTCAATC-ACTTATCAA-CTG-TCCT--GCTG--CCCTTCAT-GT  1059
      |   |||||||| ||||||||| ||| ||||   |||  || ||||| ||
seq2  TTCATTTCAATCAACTTATCAACCTGTTCCTTGACTGTCCCTTTCATGGT  1099

seq1  CTAACCTGG-CAGTTG--ACATGT  1080
      ||||||||| ||||||  ||||||
seq2  CTAACCTGGACAGTTGGAACATGT  1123