This page provides previous versions of nucleotide polymorphisms of MSM/Ms and JF1/Ms strains, corresponding to GRCm38 coordinate by Liftover from GRCm37.
Previous ver.
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RIKEN MSM/Ms Mouse BAC clones & Library
BAC clone ordering.
BAC Information
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BAC name
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search by nearby gene name.
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Search Result
BAC
Clone Name
B6Ng01-184N09
Chromosome
16 (Build37)
Map Location
62,783,157 - 62,925,349
singlet/doublet
doublet
Overlap gene
Nsun3
,
Arl13b
,
Stx19
,
Pros1
Upstream gene
LOC100043806
Downstream gene
Epha3
Link
Open Mouse BAC browser
Click to get alignment info.
name
LOC100043806
(CDS detail)
type
gene
link
vega
ensembl
xref
GeneID:100043806
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 243 ESTs, 6 Proteins
name
Nsun3
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:106338
MGI:2146565
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
Arl13b
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:68146
MGI:1915396
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
Stx19
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:68159
MGI:1915409
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
Pros1
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:19128
MGI:1095733
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
Epha3
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:13837
MGI:99612
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
LOC100043806
(CDS detail)
type
mRNA
link
vega
ensembl
NCBI
xref
GI:149267564
GeneID:100043806
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 243 ESTs, 6 Proteins
product
: similar to G protein pathway suppressor 1
transcript_id
: XM_001481150.1
name
Nsun3
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:31342146
GeneID:106338
MGI:2146565
definition
exception
: unclassified transcription discrepancy
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: NOL1/NOP2/Sun domain family 3
transcript_id
: NM_178925.2
name
Arl13b
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:61098121
GeneID:68146
MGI:1915396
definition
exception
: unclassified transcription discrepancy
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: ADP-ribosylation factor-like 13B
transcript_id
: NM_026577.2
name
Stx19
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:23956189
GeneID:68159
MGI:1915409
definition
exception
: unclassified transcription discrepancy
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: syntaxin 19
transcript_id
: NM_026588.1
name
Pros1
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:110625652
GeneID:19128
MGI:1095733
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: protein S (alpha)
transcript_id
: NM_011173.2
name
Epha3
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:141802308
GeneID:13837
MGI:99612
definition
exception
: mismatches in transcription
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: Eph receptor A3
transcript_id
: NM_010140.2
name
LOC100043806
(CDS detail)
type
CDS
link
vega
ensembl
NCBI
xref
GI:149267565
GeneID:100043806
definition
codon_start
: 1
product
: similar to G protein pathway suppressor 1
protein_id
: XP_001481200.1
name
Nsun3
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:30725798
GeneID:106338
MGI:2146565
definition
codon_start
: 1
product
: NOL1/NOP2/Sun domain family 3
protein_id
: NP_849256.1
name
Arl13b
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:61098122
CCDS:CCDS28261.1
GeneID:68146
MGI:1915396
definition
GO_component
: GO:0016020 - membrane [Evidence IEA]
GO_function
: GO:0005525 - GTP binding [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]
codon_start
: 1
exception
: mismatches in translation
product
: ADP-ribosylation factor-like 2-like 1
protein_id
: NP_080853.2
name
Stx19
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:23956190
CCDS:CCDS28262.1
GeneID:68159
MGI:1915409
definition
GO_component
: GO:0016020 - membrane [Evidence IEA]
GO_function
: GO:0008565 - protein transporter activity [Evidence IEA]
GO_process
: GO:0006886 - intracellular protein transport [Evidence IEA]
codon_start
: 1
product
: syntaxin 19
protein_id
: NP_080864.1
name
Pros1
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:46309455
CCDS:CCDS28263.1
GeneID:19128
MGI:1095733
definition
GO_component
: GO:0005576 - extracellular region [Evidence IEA]
GO_function
: GO:0005509 - calcium ion binding [Evidence IEA]
GO_process
: GO:0007596 - blood coagulation [Evidence IEA]
codon_start
: 1
product
: protein S (alpha)
protein_id
: NP_035303.1
name
Epha3
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:31982448
CCDS:CCDS28264.1
GeneID:13837
MGI:99612
definition
GO_component
: GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA]
GO_function
: GO:0005524 - ATP binding [Evidence IEA]; GO:0005003 - ephrin receptor activity [Evidence IDA]; GO:0016301 - kinase activity [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0004672 - protein kinase activity [Evidence IEA]; GO:0004713 - protein-tyrosine kinase activity [Evidence IEA]; GO:0004872 - receptor activity [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA]
GO_process
: GO:0006468 - protein amino acid phosphorylation [Evidence IEA]; GO:0007169 - transmembrane receptor protein tyrosine kinase signaling pathway [Evidence IEA]
codon_start
: 1
product
: Eph receptor A3
protein_id
: NP_034270.1
clone name
MSMg01-548C11
singlet/doublet
doublet
plural/unique
plural
clone name
MSMg01-448D15
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-508E17
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-202B08
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-511M21
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-435K11
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-527G16
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-358M04
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-544K15
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-544K23
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-495P11
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-487O13
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-125M15
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-419G19
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-386I03
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-456M06
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-149P24
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-437D13
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-492K23
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-156M20
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-433N12
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-368J19
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-524C02
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-151N10
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-443K16
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-538J23
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-386O08
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-547A17
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-291G17
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-336C17
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-324A10
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-289E18
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-369A03
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-186N06
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-315L14
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-330A18
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-494N09
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-049H11
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-093N21
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-546M23
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-296C18
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-398N18
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-407D01
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-321G15
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-350D16
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-523B11
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-374P17
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-294N24
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-355K14
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-059L10
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-395J05
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-273E17
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-475K17
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-186I01
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-049J04
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-484M22
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-065K06
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-352G06
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-411L20
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-445D13
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-504L03
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-297G20
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-501F15
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-072D16
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-292E15
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-090D13
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-270K21
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-422F22
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-181H05
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-270A08
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-360C23
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-368D06
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-095L10
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-381C21
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-261N23
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-327G16
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-352C21
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-063I17
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-520N23
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-128A09
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-136O05
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-528L09
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-502B08
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-163A02
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-491D01
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-296I04
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-389M15
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-338J21
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-499O23
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-529A22
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-160J23
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-338J19
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-443B12
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-198P13
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-469M22
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-390N21
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-110M10
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-469D09
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-372N04
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-403L22
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-395O07
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-516G15
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-213L02
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-100B14
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-544D18
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-179F11
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-374G19
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-102L21
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-438E03
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-491J13
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-050A23
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-497B04
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-233K03
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-308M01
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-332I12
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-213J12
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-539F02
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-062D07
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-121O23
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-280B07
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-173A23
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-494L23
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-108D21
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-203C16
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-062H09
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-299C14
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-392H02
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-026A24
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-152H24
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-239N14
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-300I21
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-335O03
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-053G15
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-093L06
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-085A11
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-303O18
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-189L21
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-348L06
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-036J11
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-031E13
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-302A18
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-294E07
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-336C20
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-219O05
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-274D21
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-098K17
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-098K19
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-233P02
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-296E13
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-297F10
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-046J01
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-190I13
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-349H23
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-316A18
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-116G20
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-290J04
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-045K22
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-018H09
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-327D18
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-177B10
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-077P06
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-012B08
singlet/doublet
doublet
plural/unique
unique
clone name
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