BAC Information

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BAC

Clone NameB6Ng01-186D06
Chromosome16 (Build37)
Map Location 35,981,393 - 36,139,804
singlet/doubletdoublet
Overlap geneKpna1, Wdr5b, 2310056P07Rik, Ccdc58, Csta
Upstream geneMylk, Ptplb, Adcy5, Sec22a, Pdia5, Sema5b, EG546663, Dirc2, Hspbap1, Parp14, LOC667133, LOC100043217, Dtx3l, Parp9
Downstream geneStfa2l1, EG433016, EG627962, EG408196, 2010005H15Rik, Stfa1, EG209324, LOC100038854, BC100530, LOC639105, Stfa2, Stfa3, Casr, EG667232, Cd86, Ildr1, LOC667246, Slc15a2, LOC667023, Eaf2, Iqcb1, LOC628101, Golgb1, Hcls1, Fbxo40, LOC100043252, Polq, Stxbp5l
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-186D06.bB6Ng01-186D06.g
ACCGA011111GA011112
length8051,009
definitionB6Ng01-186D06.b B6Ng01-186D06.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(36,139,001 - 36,139,804)(35,981,393 - 35,982,131)
sequence
gaattctggaaactattgtagaggaagtcttgagactgttcttgatctat
tgtccttgtctcaggccaagtggctgggcaacttcagatggcagagcagt
ttctgcctagctatctgaagcatggggttttcttgttttgttttactttg
ttttgttttaataactgacttgcctgggcttgcctgaacttcccagttct
tatgcatagtctcctgaactgacaatttgaagtttgtgatggaattactc
tagccttctcagtcggtaatcttgtgctcaaagggctgaggcaggaagat
catgagttagattgaattgaagaccaatctgggctacacatagcagccat
ctgtctcaaacaaacatacaaagagcaaatcaaacatattatacaaatcc
attaataaaatatgtattcatagactatgtttttaaaaagtataaaaaga
gcctggtgtggtggcgtatgcctttaatcccagcactcaggaggcagaga
caggcagatttctgagttcgaggccagcctggtctacaaagtgagttcca
ggacaaccagggctatacagagaaaccccgtctcaaaaaataacccaaaa
aataaaagtataaaaagatataaaatgatgttatattaatgaatacttaa
aattgttcatagaaaaaaggcaattacaaatgatcaaagaaatgattcca
tatgtgtgtattcacagatacatacgtatgtagtgtctagaacaggcaag
tacagacagaaggaagtagtggctgcttagtagtgaggggtaagggggag
aggga
gaattcaaggcaggaacctggaggcagtaattgaagcagatcatggagga
atttggtccctggcttactctcagcttgttatcctatacagcccagaggt
ggcaccgcccacagtgagtctcacatttatcgtgagtcaggaaaacaccc
caccgacgagccttcaggccaatctggtgggagcagttagcccatgtggt
cctttttctcctcctgtcttacatttatagatgtattgattcgaagagta
aaaaagtaaaataatgactgccctgagaactggcgctgcgggatgaaccg
aacgctgggttaaggcgcccgatgccgacgctcatcagaccccagaaaag
gtgctgttcctctcgtactgagcaggattatcatggcaacaacacatcat
cagtagggtaaaactaacctgtctcacgacggtctaaacccagctcacgt
tccctattagtgggtgaacaatccaacgcttggtgaattctgcttcacaa
tgataggaagagccggttagacaagcgcagaagggaaagagaagatagac
agagctggtttgaaaattggtttaataagtctccttggtttaccaccctt
gtttctacccttgccggtcccctaatcatccttttgcttttgctcacttt
tggaccttgcattcttaataagttagtggcttttgtaaaagacagggtta
gtgttgtacaggtaatggtgctccgacaacagtacctgactttgccgaaa
gaagaagaggggtcgctctaagattagagctactcacaagaagaagtggg
gaaatgaagagtaaaaaaataaaataatgactgccctgagaacatgggcc
cccgcccccggccagatggcctaatttccctggaactctttgggaaaaac
accaccaaaatgtttcattgtctcaggttgccttgaagtaaaatattccg
cccctagacttcccctgtttcctctcccatcttccccctaggttcttggt
ttttacttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_36139001_36139804
seq2: B6Ng01-186D06.b_42_846 (reverse)

seq1  TCCCTCT-CCCCTTACCCCTCACTACTAAGCAGCCACTACTTCCTTCTGT  49
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTCTCCCCCTTACCCCTCACTACTAAGCAGCCACTACTTCCTTCTGT  50

seq1  CTGTACTTGCCTGTTCTAGACACTACATACGTATGTATCTGTGAATACAC  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTACTTGCCTGTTCTAGACACTACATACGTATGTATCTGTGAATACAC  100

seq1  ACATATGGAATCATTTCTTTGATCATTTGTAATTGCCTTTTTTCTATGAA  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATATGGAATCATTTCTTTGATCATTTGTAATTGCCTTTTTTCTATGAA  150

seq1  CAATTTTAAGTATTCATTAATATAACATCATTTTATATCTTTTTATACTT  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTTTAAGTATTCATTAATATAACATCATTTTATATCTTTTTATACTT  200

seq1  TTATTTTTTGGGTTATTTTTTGAGACGGGGTTTCTCTGTATAGCCCTGGT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTTTTGGGTTATTTTTTGAGACGGGGTTTCTCTGTATAGCCCTGGT  250

seq1  TGTCCTGGAACTCACTTTGTAGACCAGGCTGGCCTCGAACTCAGAAATCT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCTGGAACTCACTTTGTAGACCAGGCTGGCCTCGAACTCAGAAATCT  300

seq1  GCCTGTCTCTGCCTCCTGAGTGCTGGGATTAAAGGCATACGCCACCACAC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGTCTCTGCCTCCTGAGTGCTGGGATTAAAGGCATACGCCACCACAC  350

seq1  CAGGCTCTTTTTATACTTTTTAAAAACATAGTCTATGAATACATATTTTA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCTCTTTTTATACTTTTTAAAAACATAGTCTATGAATACATATTTTA  400

seq1  TTAATGGATTTGTATAATATGTTTGATTTGCTCTTTGTATGTTTGTTTGA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATGGATTTGTATAATATGTTTGATTTGCTCTTTGTATGTTTGTTTGA  450

seq1  GACAGATGGCTGCTATGTGTAGCCCAGATTGGTCTTCAATTCAATCTAAC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGATGGCTGCTATGTGTAGCCCAGATTGGTCTTCAATTCAATCTAAC  500

seq1  TCATGATCTTCCTGCCTCAGCCCTTTGAGCACAAGATTACCGACTGAGAA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGATCTTCCTGCCTCAGCCCTTTGAGCACAAGATTACCGACTGAGAA  550

seq1  GGCTAGAGTAATTCCATCACAAACTTCAAATTGTCAGTTCAGGAGACTAT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTAGAGTAATTCCATCACAAACTTCAAATTGTCAGTTCAGGAGACTAT  600

seq1  GCATAAGAACTGGGAAGTTCAGGCAAGCCCAGGCAAGTCAGTTATTAAAA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATAAGAACTGGGAAGTTCAGGCAAGCCCAGGCAAGTCAGTTATTAAAA  650

seq1  CAAAACAAAGTAAAACAAAACAAGAAAACCCCATGCTTCAGATAGCTAGG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAACAAAGTAAAACAAAACAAGAAAACCCCATGCTTCAGATAGCTAGG  700

seq1  CAGAAACTGCTCTGCCATCTGAAGTTGCCCAGCCACTTGGCCTGAGACAA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAACTGCTCTGCCATCTGAAGTTGCCCAGCCACTTGGCCTGAGACAA  750

seq1  GGACAATAGATCAAGAACAGTCTCAAGACTTCCTCTACAATAGTTTCCAG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAATAGATCAAGAACAGTCTCAAGACTTCCTCTACAATAGTTTCCAG  800

seq1  AATTC  804
      |||||
seq2  AATTC  805

seq1: chr16_35981393_35982131
seq2: B6Ng01-186D06.g_64_802

seq1  GAATTCAAGGCAGGAACCTGGAGGCAGTAATTGAAGCAGATCATGGAGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGGCAGGAACCTGGAGGCAGTAATTGAAGCAGATCATGGAGGA  50

seq1  ATTTGGTCCCTGGCTTACTCTCAGCTTGTTATCCTATACAGCCCAGAGGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGGTCCCTGGCTTACTCTCAGCTTGTTATCCTATACAGCCCAGAGGT  100

seq1  GGCACCGCCCACAGTGAGTCTCACATTTATCGTGAGTCAGGAAAACACCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACCGCCCACAGTGAGTCTCACATTTATCGTGAGTCAGGAAAACACCC  150

seq1  CACCGACGAGCCTTCAGGCCAATCTGGTGGGAGCAGTTAGCCCATGTGGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCGACGAGCCTTCAGGCCAATCTGGTGGGAGCAGTTAGCCCATGTGGT  200

seq1  CCTTTTTCTCCTCCTGTCTTACATTTATAGATGTATTGATTCGAAGAGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTTTCTCCTCCTGTCTTACATTTATAGATGTATTGATTCGAAGAGTA  250

seq1  AAAAAGTAAAATAATGACTGCCCTGAGAACTGGCGCTGCGGGATGAACCG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGTAAAATAATGACTGCCCTGAGAACTGGCGCTGCGGGATGAACCG  300

seq1  AACGCTGGGTTAAGGCGCCCGATGCCGACGCTCATCAGACCCCAGAAAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGCTGGGTTAAGGCGCCCGATGCCGACGCTCATCAGACCCCAGAAAAG  350

seq1  GTGCTGTTCCTCTCGTACTGAGCAGGATTATCATGGCAACAACACATCAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTGTTCCTCTCGTACTGAGCAGGATTATCATGGCAACAACACATCAT  400

seq1  CAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACGT  450

seq1  TCCCTATTAGTGGGTGAACAATCCAACGCTTGGTGAATTCTGCTTCACAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTATTAGTGGGTGAACAATCCAACGCTTGGTGAATTCTGCTTCACAA  500

seq1  TGATAGGAAGAGCCGGTTAGACAAGCGCAGAAGGGAAAGAGAAGATAGAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAGGAAGAGCCGGTTAGACAAGCGCAGAAGGGAAAGAGAAGATAGAC  550

seq1  AGAGCTGGTTTGAAAATTGGTTTAATAAGTCTCCTTGGTTTACCACCCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCTGGTTTGAAAATTGGTTTAATAAGTCTCCTTGGTTTACCACCCTT  600

seq1  GTTTCTACCCTTGCCGGTCCCCTAATCATCCTTTTGCTTTTGCTCACTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTACCCTTGCCGGTCCCCTAATCATCCTTTTGCTTTTGCTCACTTT  650

seq1  TGGACCTTGCATTCTTAATAAGTTAGTGGCTTTTGTAAAAGACAGGGTTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACCTTGCATTCTTAATAAGTTAGTGGCTTTTGTAAAAGACAGGGTTA  700

seq1  GTGTTGTACAGGTAATGGTGCTCCGACAACAGTACCTGA  739
      |||||||||||||||||||||||||||||||||||||||
seq2  GTGTTGTACAGGTAATGGTGCTCCGACAACAGTACCTGA  739