BAC Information

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BAC

Clone NameB6Ng01-186E10
Chromosome16 (Build37)
Map Location 74,984,341 - 75,107,261
singlet/doubletdoublet
Overlap genenone
Upstream geneRobo2, LOC665042
Downstream geneD930038D03Rik, Rbm11, Stch, LOC546667, Samsn1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-186E10.bB6Ng01-186E10.g
ACCGA011162GA011163
length1,1931,122
definitionB6Ng01-186E10.b B6Ng01-186E10.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(74,984,341 - 74,985,098)(75,106,125 - 75,107,261)
sequence
gaattcaataactgggtataagtaaaacaaacaaaccagtttaaaagtgg
ggtacagatctaaacatagaatctgaatagagggatctcaaatggctgac
attcacttaaagaaatcttaaacatccttagccataaaggaaatgcaaat
tataattcctttgagattctagtggtcatggtactagaaatcttctgtgt
actaccaatgaagaaagataaataccaaccaagctacaaaccattcaaac
tactataataacctccttaccagatgctctagcataataagggcatgata
ttaacataataagtttgtggtattaactaaatgatatctgattagatatg
tggcccactccatgagactgaaaccatccctgacattcttctggtggcca
agaaccagaggccagatatactagggacctccagagacccaaatatcatt
gtctatgaaaggaaggtagctataagatgattcctgatgacattatgcta
cactcgtagatcagttgcttgttccgtcatcatcagagaaccttccttct
ccagtgaatgggaaaaaatacagactcaatgtgcagagagtgaaagacct
tagaatagtcagtcctaactggatatgttcctcatatccttctcctcagg
gctcagggaaccctgaagaagataaggtggaaggagtggaagagccaaag
agcactgatgtcaccgagtggaaaaatacatcatgatcaagccacatatg
ctcttacagagaatgaggcagcatgctcagaacctgtatgggtctgttcc
agatggcactccagtgttctgacacaagctgtttccccaatctgaagcta
tgtcaaatgataaccacttgcagaaaaatttattctctgcaaatgagtct
cactagggataaaacccattcttcttctcttatttaaaatgaaatttaaa
ttatatatatttgatcatgttctttccctccaagttttttaaatcctctc
tctctaacacccaaaaaggaaacaaacattggatacagaaacaacaaaaa
cccaaacaaactcaaaactacatatatgaataaaaaagcacacagactat
gattctataatatggtgtgtgacgtgtgaactgagccctgatcagcagtt
aattggcctaattgctccatgggagaaactgattttctctctc

gaattcaccctctttctggctctcattagcaaacaaacaggtttctaaga
tataataaaataaaatgagaaaaaaacagaaacacaatgaaataatgcaa
aacaaacacatagaaggaaaacagctcaagaaaagctcaaaagaaacaaa
cattgaagcagagattcattcatttgcacattcagaaatcccataaaagc
tggaaaccttaatacatacatatatatactatagcaaaaataatgagaaa
taaaattacaacttaagacttaataaaagaagagccttttacttattttc
acttatatgttaaacaccatttaccaagttccttctacacaaatgccaag
gaccttttaataatattcatgagtaagccaaactaacaaaaccccagtca
gtaaggagctatctttcaaatgaggaagaaattagaaacatatggaaacc
acacaagaatacagtttttaatagattaaaatgaacaggtagcgtaggaa
aaaaataacaaaagaaatctgggcaagataagggtagtgtggaatggcaa
gtctcaatgtggcacaggactaattaatgtggcaatggtggtaggtttca
tttgtaaggtgaaaactgcaaactctgaaagagaatggaggatcggatta
ggtcaaagtcacagctaaggcatttgaaaactgttaggcatttaagtcat
tgtcatatgaaggcagctagtaagcaaggcacaaatagaaattatagagt
agcaaaggcagaccagagaaagccttccatgtgatggaccaaagttcttc
tttttgagttacaattggaagcgattcattattttggaaaaaaaaaaaaa
catagtataaactgactttctaaaacactttacctattgtactattaaaa
tagtggccctagaaaggagatctgtcagttgtgctcatatttgatgctga
gagatgttagtgactcagatcaggatggggagtaatggatgaaaaaagat
cgaatagatatcacatgtgttacagaagaaaggtaatatggctttcagat
gactcactgcatactgaaggacataataatctatttttggttgactaact
agatggatgaattgttttaaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_74984341_74985098
seq2: B6Ng01-186E10.b_510_1237

seq1  GTAGCTATAAGATGATTCCTGATGACATTATGCTACACTCGTAGATCAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCTATAAGATGATTCCTGATGACATTATGCTACACTCGTAGATCAGT  50

seq1  TGCTTGTTCCGTCATCATCAGAGAACCTTCCTTCTCCAGTGAATGGGAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTGTTCCGTCATCATCAGAGAACCTTCCTTCTCCAGTGAATGGGAAA  100

seq1  AAATACAGACTCAATGTGCAGAGAGTGAAAGACCTTAGAATAGTCAGTCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATACAGACTCAATGTGCAGAGAGTGAAAGACCTTAGAATAGTCAGTCC  150

seq1  TAACTGGATATGTTCCTCATATCCTTCTCCTCAGGGCTCAGGGAACCCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTGGATATGTTCCTCATATCCTTCTCCTCAGGGCTCAGGGAACCCTG  200

seq1  AAGAAGATAAGGTGGAAGGAGTGGAAGAGCCAAAGAGCACTGATGTCACC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGATAAGGTGGAAGGAGTGGAAGAGCCAAAGAGCACTGATGTCACC  250

seq1  GAGTGGAAAAATACATCATGATCAAGCCACATATGCTCTTACAGAGAATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGGAAAAATACATCATGATCAAGCCACATATGCTCTTACAGAGAATG  300

seq1  AGGCAGCATGCTCAGAACCTGTATGGGTCTGTTCCAGATGGCACTCCAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGCATGCTCAGAACCTGTATGGGTCTGTTCCAGATGGCACTCCAGT  350

seq1  GTTCTGACACAAGCTGTTTCCCCAATCTGAAGCTATGTCAAATGATAACC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTGACACAAGCTGTTTCCCCAATCTGAAGCTATGTCAAATGATAACC  400

seq1  ACTTGCAGAAAAATTTATTCTCTGCAAATGAGTCTCACTAGGGATAAAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  ACTTGCAGAAAAATTTATTCTCTGCAAATGAGTCTCACTAGGGAT-AAAA  449

seq1  CCCATTCTTCTTCTCTTATTTAAAATGAAATTTAAATTTATATATATTTG  500
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  CCCATTCTTCTTCTCTTATTTAAAATGAAATTTAAA-TTATATATATTTG  498

seq1  ATCATGTTCTTTCCCTCCAAGTTTTTTAAAATCCCTCTCCTCTCTAAACA  550
      ||||||||||||||||||||||||||||||   ||||| |||||| ||||
seq2  ATCATGTTCTTTCCCTCCAAGTTTTTTAAA--TCCTCT-CTCTCT-AACA  544

seq1  CCCAAAAAGGAAACAAACATTGGATACAAGAAAACAAACAAAAAACCCAA  600
      ||||||||||||||||||||||||||||   ||||||   ||||||||||
seq2  CCCAAAAAGGAAACAAACATTGGATACA--GAAACAA--CAAAAACCCAA  590

seq1  ACAAACTCAAAAAACCTACATTAATATGAATAAAAAAAAGCACACAAAGA  650
      ||||||||||||   ||||||  ||||||||  |||||||||||||    
seq2  ACAAACTCAAAA---CTACAT--ATATGAAT--AAAAAAGCACACA---G  630

seq1  ACTATGGATTCTATAATATGTTGGTTGTGACGTGTGAACATGAGGCCTGC  700
      ||||| |||||||||||||| ||  |||||||||||||| |||| |||| 
seq2  ACTAT-GATTCTATAATATGGTG--TGTGACGTGTGAAC-TGAGCCCTGA  676

seq1  TCAGCAGAGGTTAATATGCTCTATTTTGCTCCATTGGAGAAAACTGATTT  750
      ||||||   |||||| ||  |||  ||||||||| |||| ||||||||||
seq2  TCAGCA---GTTAAT-TGGCCTA-ATTGCTCCATGGGAG-AAACTGATTT  720

seq1  TCTCTCTC  758
      ||||||||
seq2  TCTCTCTC  728


seq1: chr16_75106125_75107261
seq2: B6Ng01-186E10.g_64_1185 (reverse)

seq1  ATTTAAAAACAATATCATCTATCTAGTTAGTCAAACAAAAAAATTAGAAT  50
      |||| |||||||| ||||| |||||||||||||| ||||||   |||| |
seq2  ATTT-AAAACAAT-TCATCCATCTAGTTAGTCAACCAAAAA---TAGATT  45

seq1  AATTTTATGTCCTTTCAAGTATGCAGGTGAGGTCCATCTGAAAGCCATAT  100
      |   ||||||||||   |||||||| |||||   ||||||||||||||||
seq2  A---TTATGTCCTT--CAGTATGCA-GTGAG--TCATCTGAAAGCCATAT  87

seq1  TAACCTTTCTTCTGTAACACATGTGATATCTATTCGATTCTTTTTTCATC  150
      | ||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  T-ACCTTTCTTCTGTAACACATGTGATATCTATTCGA-TCTTTTTTCATC  135

seq1  CATTACT-CCCATCCTGATCTGAGTCACTAACATCTCTCAGCATCAAATA  199
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  CATTACTCCCCATCCTGATCTGAGTCACTAACATCTCTCAGCATCAAATA  185

seq1  TGAGCACAACTGACAGATCTCCCTTCTAGGCCACCTATTTTAATAGTACA  249
      |||||||||||||||||||||| ||||||| |  ||||||||||||||||
seq2  TGAGCACAACTGACAGATCTCCTTTCTAGGGCCACTATTTTAATAGTACA  235

seq1  ATAGGTAAAGTGTTTTAGAAAGTTCAGTTTATACTATGTTTTTTTTTTTT  299
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  ATAGGTAAAGTGTTTTAGAAAG-TCAGTTTATACTATGTTTTTTTTTTTT  284

seq1  TCCAAAATAATGAATCGCTTCCAATTGTAACTCAAAAAGAAGAACTTTGG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAAATAATGAATCGCTTCCAATTGTAACTCAAAAAGAAGAACTTTGG  334

seq1  TCCATCACATGGAAGGCTTTCTCTGGTCTGCCTTTGCTACTCTATAATTT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATCACATGGAAGGCTTTCTCTGGTCTGCCTTTGCTACTCTATAATTT  384

seq1  CTATTTGTGCCTTGCTTACTAGCTGCCTTCATATGACAATGACTTAAATG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTTGTGCCTTGCTTACTAGCTGCCTTCATATGACAATGACTTAAATG  434

seq1  CCTAACAGTTTTCAAATGCCTTAGCTGTGACTTTGACCTAATCCGATCCT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAACAGTTTTCAAATGCCTTAGCTGTGACTTTGACCTAATCCGATCCT  484

seq1  CCATTCTCTTTCAGAGTTTGCAGTTTTCACCTTACAAATGAAACCTACCA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTCTCTTTCAGAGTTTGCAGTTTTCACCTTACAAATGAAACCTACCA  534

seq1  CCATTGCCACATTAATTAGTCCTGTGCCACATTGAGACTTGCCATTCCAC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTGCCACATTAATTAGTCCTGTGCCACATTGAGACTTGCCATTCCAC  584

seq1  ACTACCCTTATCTTGCCCAGATTTCTTTTGTTATTTTTTTCCTACGCTAC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACCCTTATCTTGCCCAGATTTCTTTTGTTATTTTTTTCCTACGCTAC  634

seq1  CTGTTCATTTTAATCTATTAAAAACTGTATTCTTGTGTGGTTTCCATATG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTCATTTTAATCTATTAAAAACTGTATTCTTGTGTGGTTTCCATATG  684

seq1  TTTCTAATTTCTTCCTCATTTGAAAGATAGCTCCTTACTGACTGGGGTTT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTAATTTCTTCCTCATTTGAAAGATAGCTCCTTACTGACTGGGGTTT  734

seq1  TGTTAGTTTGGCTTACTCATGAATATTATTAAAAGGTCCTTGGCATTTGT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAGTTTGGCTTACTCATGAATATTATTAAAAGGTCCTTGGCATTTGT  784

seq1  GTAGAAGGAACTTGGTAAATGGTGTTTAACATATAAGTGAAAATAAGTAA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGAAGGAACTTGGTAAATGGTGTTTAACATATAAGTGAAAATAAGTAA  834

seq1  AAGGCTCTTCTTTTATTAAGTCTTAAGTTGTAATTTTATTTCTCATTATT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCTCTTCTTTTATTAAGTCTTAAGTTGTAATTTTATTTCTCATTATT  884

seq1  TTTGCTATAGTATATATATGTATGTATTAAGGTTTCCAGCTTTTATGGGA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTATAGTATATATATGTATGTATTAAGGTTTCCAGCTTTTATGGGA  934

seq1  TTTCTGAATGTGCAAATGAATGAATCTCTGCTTCAATGTTTGTTTCTTTT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGAATGTGCAAATGAATGAATCTCTGCTTCAATGTTTGTTTCTTTT  984

seq1  GAGCTTTTCTTGAGCTGTTTTCCTTCTATGTGTTTGTTTTGCATTATTTC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTTTTCTTGAGCTGTTTTCCTTCTATGTGTTTGTTTTGCATTATTTC  1034

seq1  ATTGTGTTTCTGTTTTTTTCTCATTTTATTTTATTATATCTTAGAAACCT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTGTTTCTGTTTTTTTCTCATTTTATTTTATTATATCTTAGAAACCT  1084

seq1  GTTTGTTTGCTAATGAGAGCCAGAAAGAGGGTGAATTC  1137
      ||||||||||||||||||||||||||||||||||||||
seq2  GTTTGTTTGCTAATGAGAGCCAGAAAGAGGGTGAATTC  1122


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