BAC Information

Click to search

BAC

Clone NameB6Ng01-187F10
Chromosome16 (Build37)
Map Location 40,073,955 - 40,075,158
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC667400
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-187F10.bB6Ng01-187F10.g
ACCGA011943GA011944
length1,2061,181
definitionB6Ng01-187F10.b B6Ng01-187F10.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctctttggacttatactggtgaatttttttccctcatagaatagt
cagggtggatgggatgagaccagagagtttcatagacattttcaagcacg
gcaaagaagataaatgtcaatacgattacagagtggcactttctccattc
attctccctgcaagaatttcaacttaaaaatctccactataaaaatacat
aaggcatgactggtactgtcacagactagatgggagtgaattggaaatat
aataataataataaaaaacaaaactgagggagtctttatagatcatttga
tgacaaatgtttcaaatctttagtttgtaatattaagaaactcttttagc
aaaacatgtgttgaatgcataattctccaaagaatttgtgtgctcacatg
gacatgagaacatagtagaaccaaaagattttaatcaaaactttaaaaaa
tgaaacatacatggatcaagttaaaaaatacacaggcaaaacatacatcc
aaaatacagaaaaccaagtagacaagtaagtgttcaaaatacacaccaca
cacacacacacacacacacacacacacacacagatacacacacgcccacc
ccccccacacacacacagagagagagagagagagagagagagagagagag
agagagagagagaatgagcacaattgtaacttagcacactacattcttaa
gatgatgggaaatgattaaactttagtagtaggtcacatgtacaattctt
agaaaggaatttcttgtattttacatatctccctcgagctaaaagcactc
agaagacctataggtggtttaactcttttggcagctctttcaaccaacct
aggtgacccaatcagtaaatgggggaaccctcacatcctcctagtcctct
caagcttagtaccctcacaaaaaggggacttttatgaaaaaacatactgc
acggtatccaatatgaacacgtgtttatttttgatgattggagatattgg
aaccgtttaacatggaaaaatcaaaggtctggtgcaaataagcacctaac
cacataaacatatgaatttctattatgtaatcactgtcacatcaatatat
gaaaatctggttatggtaatcacctgatgttactaaaattaactgaaatg
ttctcaagcctttaatgttttacatggaatgatataaaaatggtttctca
ttcatg

gaattcaaatcctgtacccagatatgtcttcacaactgtctataactggg
tcttatgtcccttctggcatgcaggtgtacatgcatcagagtgctcatat
attaaacaaacaaacaaaataaaaacaattatacaaaagttataaaaaag
aagattatttgatctgaaaaaatattcattacatattagaataagaaatg
aacatttgcagttcagaattttgcctgcatagcaataccaagctagctga
gaaataatcagaaatagaattttactaacaagacttagaaaatagcaata
gtttgaaaaaataaaatatcttggtgtaaacataagcaagggaataaagt
atctctacaaaaatattagattttgaagagagaaattaaagatcaaagag
atatggatcaggattcaagactgtgaagatggttttcttaaaaaaatatc
aatctacacatttaataaaatgccataatagttttaatgatgctactcac
aaaggaaagactgtcttaaaaatgataccaaaacacaaacaacccaaata
gcaggaacaattctcagctacaaaagcactgctggtgccatcatgatgcc
taatcccaaattatactccagagccactgtactgaataaatatgggcaca
tattccaatgaaatcaaattgaggagacattaaaaacagctatagccatc
aaaagtttgaaaatgttgttaaaacaagtttgataaaacacatccaattc
aataaattttgcaataaaaatttgatatccacctgtataaatgaaactag
atcaatatttctcactctccaaaaaaatcaactcaaaatgaagctaagag
tttaagttaaaaccaaaaactcttaaagtgctagaagagaacataggcag
ttttaaagatataggcgaggaccaaaggtaataggtttttttttttatga
ctgcatttatacaggaattaccttaataactaataaacaggattgaatga
aattaaaccatcatgctcatgagataagaaacgacgccagcagtgccaga
gttatgtacaggactaagtaatcctttaccaaccttaaccaattaattac
atcattaatgtgcctatgcattgatagcattctcaactgaaattacgagt
atttctgcctgaaaattttgggaataccatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_40073955_40075158
seq2: B6Ng01-187F10.b_45_1250

seq1  GAATTCTCTTTGGACTTATACTGGTGAATTTTTTTCCCTCATAGAATAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTTTGGACTTATACTGGTGAATTTTTTTCCCTCATAGAATAGT  50

seq1  CAGGGTGGATGGGATGAGACCAGAGAGTTTCATAGACATTTTCAAGCACG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGTGGATGGGATGAGACCAGAGAGTTTCATAGACATTTTCAAGCACG  100

seq1  GCAAAGAAGATAAATGTCAATACGATTACAGAGTGGCACTTTCTCCATTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAGAAGATAAATGTCAATACGATTACAGAGTGGCACTTTCTCCATTC  150

seq1  ATTCTCCCTGCAAGAATTTCAACTTAAAAATCTCCACTATAAAAATACAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTCCCTGCAAGAATTTCAACTTAAAAATCTCCACTATAAAAATACAT  200

seq1  AAGGCATGACTGGTACTGTCACAGACTAGATGGGAGTGAATTGGAAATAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCATGACTGGTACTGTCACAGACTAGATGGGAGTGAATTGGAAATAT  250

seq1  AATAATAATAATAAAAAACAAAACTGAGGGAGTCTTTATAGATCATTTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATAATAATAAAAAACAAAACTGAGGGAGTCTTTATAGATCATTTGA  300

seq1  TGACAAATGTTTCAAATCTTTAGTTTGTAATATTAAGAAACTCTTTTAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAAATGTTTCAAATCTTTAGTTTGTAATATTAAGAAACTCTTTTAGC  350

seq1  AAAACATGTGTTGAATGCATAATTCTCCAAAGAATTTGTGTGCTCACATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACATGTGTTGAATGCATAATTCTCCAAAGAATTTGTGTGCTCACATG  400

seq1  GACATGAGAACATAGTAGAACCAAAAGATTTTAATCAAAACTTTAAAAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATGAGAACATAGTAGAACCAAAAGATTTTAATCAAAACTTTAAAAAA  450

seq1  TGAAACATACATGGATCAAGTTAAAAAATACACAGGCAAAACATACATCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAACATACATGGATCAAGTTAAAAAATACACAGGCAAAACATACATCC  500

seq1  AAAATACAGAAAACCAAGTAGACAAGTAAGTGTTCAAAATACACACCACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATACAGAAAACCAAGTAGACAAGTAAGTGTTCAAAATACACACCACA  550

seq1  CACACACACACACACACACACACACACACACAGATACACACACGCCCACC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACACACACACACAGATACACACACGCCCACC  600

seq1  CCCCCCACACACACACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCCACACACACACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG  650

seq1  AGAGAGAGAGAGAATGAGCACAATTGTAACTTAGCACACTACATTCTTAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAGAGAGAATGAGCACAATTGTAACTTAGCACACTACATTCTTAA  700

seq1  GATGATGGGAAATGATTAAACTTTAGTAGTAGGTCACATGTACAATTCTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGATGGGAAATGATTAAACTTTAGTAGTAGGTCACATGTACAATTCTT  750

seq1  AGAAAGGAATTTCTTGTATTTTACATATCTCCCTCGAGCTAAAAGCACTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGGAATTTCTTGTATTTTACATATCTCCCTCGAGCTAAAAGCACTC  800

seq1  AGAAGACCTATAGGTGGTTTAACTCTTTTGGCAGCTCTTTCAACCAACCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGACCTATAGGTGGTTTAACTCTTTTGGCAGCTCTTTCAACCAACCT  850

seq1  AGGTGACCCAATCAGTAAAT-GGGGAACCCTCACATCCTCCTAGTCCTCT  899
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  AGGTGACCCAATCAGTAAATGGGGGAACCCTCACATCCTCCTAGTCCTCT  900

seq1  CAAGCTTAGTACCCTCACAAAAA-GGGACTTTTATGAAAAAACATACTGC  948
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  CAAGCTTAGTACCCTCACAAAAAGGGGACTTTTATGAAAAAACATACTGC  950

seq1  ACGGTATCCAATATGAACACGTGTTTATTTTTGATGATTTGGAGATATT-  997
      ||||||||||||||||||||||||||||||||||||| ||||||||||| 
seq2  ACGGTATCCAATATGAACACGTGTTTATTTTTGATGA-TTGGAGATATTG  999

seq1  GAACCGTTTAACAATGGAAAAATCAAA-GTCTTGTGCAAAATTAAGCACC  1046
      |||||||||||| |||||||||||||| |||| |||||||  ||||||||
seq2  GAACCGTTTAAC-ATGGAAAAATCAAAGGTCTGGTGCAAA--TAAGCACC  1046

seq1  TAA-CACATAAACATATGAATTTCTATTATGTAAATTCACTGTCCACATC  1095
      ||| ||||||||||||||||||||||||||||||  ||||||| ||||||
seq2  TAACCACATAAACATATGAATTTCTATTATGTAA--TCACTGT-CACATC  1093

seq1  AATATATGAAAATCT-GTTATGTAAATTCACTGATGTTTACTAAAATTAT  1144
      ||||||||||||||| ||||||  |||   |||||| |||||||||||| 
seq2  AATATATGAAAATCTGGTTATGGTAATCACCTGATG-TTACTAAAATTA-  1141

seq1  ACTGAAAATTGTTCTCAAG-CTTTTATG-TTTAC-----ATGATAATAAA  1187
      |||||||  |||||||||| |||| ||| |||||     ||||||  |||
seq2  ACTGAAA--TGTTCTCAAGCCTTTAATGTTTTACATGGAATGATATAAAA  1189

seq1  ATGGTTTTCTATTCATG  1204
      |||||||   |||||||
seq2  ATGGTTTCTCATTCATG  1206


| Home | SequenceCutter | Blast | Download |