BAC Information

Click to search

BAC

Clone NameB6Ng01-187I12
Chromosome16 (Build37)
Map Location 41,772,198 - 41,896,476
singlet/doubletdoublet
Overlap geneLsamp
Upstream geneEG667450
Downstream geneGap43
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-187I12.bB6Ng01-187I12.g
ACCGA012087GA012088
length1,0881,099
definitionB6Ng01-187I12.b B6Ng01-187I12.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(41,895,401 - 41,896,476)(41,772,198 - 41,773,317)
sequence
gaattcttgatacatttttgcctgaatcaattatttctgtaaggatttcc
aaagaatatttaccacattccaacattatttctatactgattattctaag
agtacaattcgcaatttttatttattagctaccatctatattgtaatatc
tgaaataacctattttcatgggcacatcttcttagacatggctgatagaa
gccagtcaagctgccttctgtatatccttgcaaatatcattattctttta
gtactttttttttttttacttttttgtacaaaaggcattccaggctcatc
ctctgcttccctgccccatcctgatcatcttttttattttctctaagcaa
cccatgttccttgtagcagatatgataatttcatagaaacatctgtatgc
tacgtagtaggtaacggccattttagtgtggtgttaatgctccacggcct
tctctccatctctgtctctatctccttacatctaccttaaattcacaaat
aaacactaactataatagtttcattttttcacttcactgttacatgttca
tgttctccatgttacatctctctattcccataactggaaactgggagtca
ttatacttctttgtcaatttactcacttctcctaagtttccgactaaaca
cactggacttgccactaggatagtttcttacagggatgttaagcccctca
gagatgctgcccttcttgggaccctccttacatgggtcatgacctagtat
caagttgctttctgactatgcttcatagaatttttttttttttttagtac
tagaaagagagaaaagaaccttactgacttttgtgtactcaatttgtttg
tcatttaagcaaacctaggagatcaaaggttagagacccactctatcatt
taaaagatcattaaaagagaaacacaatcctttggatgcaaactggctca
atgaaattacctgtatttattgagctcataatgcaccactgacgttatta
gtcttcagatgtgactgtgtgaattccaaaatgttgttctttgaatgttt
tttaagaaggacaaaatttttatttctgtttcctcagg
gaattcttctctgctctcattttcaaactgcacagggctggctgagcttg
cacctcacttgttaatctcccttttgcatccctgtttttgtggctgtcag
aactccatattatgcaaattgggcttaagcaattaaggcaataatgtctc
ccttgaagagtttgacaaggtggtgggagtttgggctgcatttcccagac
aggggcttggatgcttatttacctacaaatagaagtgaacaagaaactgg
aagacacagttggatatggcttgcctgagctgggctgcagctttctctag
ctattcctctgttaccacaaagaacaaggggtcacttggcggcattagtg
ggtggtaaatttagaataaacggacactttccacaagatgtagttttaac
ctgttgaattcacacctgcagaaggccacgaaatcaattcctctgactgg
attttaaaggggactaggtgactttgtgaggaataatatttgaagctgct
ggggctgtgtatcttctgtttggggtcaagaactgattgtctgaaagcta
gagggaagcaaggccaggaagtcaggctctgtctgtgataagactgaatt
gcacagcgcatgagaatatcacagctactttcctctaaaacatccccggt
catcaagaaacccaacaggaggcacttggctctgagattgatagtaaatg
ctgtcttctctcctgccttggcatttagtatgtagaaggaccaggaaccg
aggttatttagtgtccatcattctttccctcattagttgaacatgtgatg
aggaaatgcctgccatgcctgtagcatgtagcatgtaacacgtgtgcatg
tgagcacagtagtgtaaatgataggaagtagggctgagaacaagcctaac
caggataagtataacctgattctaattatctattagcacagtatttgctc
ttggtttcttcacatactttgtcatttccctggcagcagtcttagtcaag
ctcaaatctcccctctttcagtcacttggtgtgatctgctagttattttc
aactttctaatgttagcatgttccctaaacttgtgttcttcataaatac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_41895401_41896476
seq2: B6Ng01-187I12.b_47_1134 (reverse)

seq1  CCTGA-GAAACAGAAATAAAA--TCTGTCC-TCTT-AAAAACA-TCAAAG  44
      ||||| |||||||||||||||  | ||||| |||| ||||||| ||||||
seq2  CCTGAGGAAACAGAAATAAAAATTTTGTCCTTCTTAAAAAACATTCAAAG  50

seq1  -ACAACATTTT-GAATTCACACAGTCACATCTGAAGACTAATAACGTCAG  92
       |||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  AACAACATTTTGGAATTCACACAGTCACATCTGAAGACTAATAACGTCAG  100

seq1  T-GTGCA-TATGAGCTCAATAAATACAGGTAATTTCATTGAGCCAGTTTG  140
      | ||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGCATTATGAGCTCAATAAATACAGGTAATTTCATTGAGCCAGTTTG  150

seq1  CATCCAAAGGATTGTGTTTCTCTTTTAATGATCTTTTAAATGATAGAGTG  190
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCAAAGGATTGTGTTTCTCTTTTAATGATCTTTTAAATGATAGAGTG  200

seq1  GGTCTCTAACC-TTGATCTCCTAGGTTTGCTTAAATGACAAACAAATTGA  239
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  GGTCTCTAACCTTTGATCTCCTAGGTTTGCTTAAATGACAAACAAATTGA  250

seq1  GTACACAAAAGTCAGTAAGGTTCTTTTCTCTCTTTCTAGTACT-AAAAAA  288
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  GTACACAAAAGTCAGTAAGGTTCTTTTCTCTCTTTCTAGTACTAAAAAAA  300

seq1  AAAAAAAATTCTATGAAGCATAGTCAGAAAGCAACTTGATACTAGGTCAT  338
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAATTCTATGAAGCATAGTCAGAAAGCAACTTGATACTAGGTCAT  350

seq1  GACCCATGTAAGGAGGGTCCCAAGAAGGGCAGCATCTCTGAGGGGCTTAA  388
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCATGTAAGGAGGGTCCCAAGAAGGGCAGCATCTCTGAGGGGCTTAA  400

seq1  CATCCCTGTAAGAAACTATCCTAGTGGCAAGTCCAGTGTGTTTAGTCGGA  438
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCCTGTAAGAAACTATCCTAGTGGCAAGTCCAGTGTGTTTAGTCGGA  450

seq1  AACTTAGGAGAAGTGAGTAAATTGACAAAGAAGTATAATGACTCCCAGTT  488
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTAGGAGAAGTGAGTAAATTGACAAAGAAGTATAATGACTCCCAGTT  500

seq1  TCCAGTTATGGGAATAGAGAGATGTAACATGGAGAACATGAACATGTAAC  538
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGTTATGGGAATAGAGAGATGTAACATGGAGAACATGAACATGTAAC  550

seq1  AGTGAAGTGAAAAAATGAAACTATTATAGTTAGTGTTTATTTGTGAATTT  588
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAAGTGAAAAAATGAAACTATTATAGTTAGTGTTTATTTGTGAATTT  600

seq1  AAGGTAGATGTAAGGAGATAGAGACAGAGATGGAGAGAAGGCCGTGGAGC  638
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTAGATGTAAGGAGATAGAGACAGAGATGGAGAGAAGGCCGTGGAGC  650

seq1  ATTAACACCACACTAAAATGGCCGTTACCTACTACGTAGCATACAGATGT  688
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAACACCACACTAAAATGGCCGTTACCTACTACGTAGCATACAGATGT  700

seq1  TTCTATGAAATTATCATATCTGCTACAAGGAACATGGGTTGCTTAGAGAA  738
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTATGAAATTATCATATCTGCTACAAGGAACATGGGTTGCTTAGAGAA  750

seq1  AATAAAAAAGATGATCAGGATGGGGCAGGGAAGCAGAGGATGAGCCTGGA  788
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAAAAGATGATCAGGATGGGGCAGGGAAGCAGAGGATGAGCCTGGA  800

seq1  ATGCCTTTTGTACAAAAAAGTAAAAAAAAAAAAAGTACTAAAAGAATAAT  838
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCTTTTGTACAAAAAAGTAAAAAAAAAAAAAGTACTAAAAGAATAAT  850

seq1  GATATTTGCAAGGATATACAGAAGGCAGCTTGACTGGCTTCTATCAGCCA  888
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATTTGCAAGGATATACAGAAGGCAGCTTGACTGGCTTCTATCAGCCA  900

seq1  TGTCTAAGAAGATGTGCCCATGAAAATAGGTTATTTCAGATATTACAATA  938
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTAAGAAGATGTGCCCATGAAAATAGGTTATTTCAGATATTACAATA  950

seq1  TAGATGGTAGCTAATAAATAAAAATTGCGAATTGTACTCTTAGAATAATC  988
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATGGTAGCTAATAAATAAAAATTGCGAATTGTACTCTTAGAATAATC  1000

seq1  AGTATAGAAATAATGTTGGAATGTGGTAAATATTCTTTGGAAATCCTTAC  1038
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATAGAAATAATGTTGGAATGTGGTAAATATTCTTTGGAAATCCTTAC  1050

seq1  AGAAATAATTGATTCAGGCAAAAATGTATCAAGAATTC  1076
      ||||||||||||||||||||||||||||||||||||||
seq2  AGAAATAATTGATTCAGGCAAAAATGTATCAAGAATTC  1088

seq1: chr16_41772198_41773317
seq2: B6Ng01-187I12.g_63_1161

seq1  GAATTCTTCTCTGCTCTCATTTTCAAACTGCACAGGGCTGGCTGAGCTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCTCTGCTCTCATTTTCAAACTGCACAGGGCTGGCTGAGCTTG  50

seq1  CACCTCACTTGTTAATCTCCCTTTTGCATCCCTGTTTTTGTGGCTGTCAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTCACTTGTTAATCTCCCTTTTGCATCCCTGTTTTTGTGGCTGTCAG  100

seq1  AACTCCATATTATGCAAATTGGGCTTAAGCAATTAAGGCAATAATGTCTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCCATATTATGCAAATTGGGCTTAAGCAATTAAGGCAATAATGTCTC  150

seq1  CCTTGAAGAGTTTGACAAGGTGGTGGGAGTTTGGGCTGCATTTCCCAGAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGAAGAGTTTGACAAGGTGGTGGGAGTTTGGGCTGCATTTCCCAGAC  200

seq1  AGGGGCTTGGATGCTTATTTACCTACAAATAGAAGTGAACAAGAAACTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGCTTGGATGCTTATTTACCTACAAATAGAAGTGAACAAGAAACTGG  250

seq1  AAGACACAGTTGGATATGGCTTGCCTGAGCTGGGCTGCAGCTTTCTCTAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACACAGTTGGATATGGCTTGCCTGAGCTGGGCTGCAGCTTTCTCTAG  300

seq1  CTATTCCTCTGTTACCACAAAGAACAAGGGGTCACTTGGCGGCATTAGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTCCTCTGTTACCACAAAGAACAAGGGGTCACTTGGCGGCATTAGTG  350

seq1  GGTGGTAAATTTAGAATAAACGGACACTTTCCACAAGATGTAGTTTTAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGTAAATTTAGAATAAACGGACACTTTCCACAAGATGTAGTTTTAAC  400

seq1  CTGTTGAATTCACACCTGCAGAAGGCCACGAAATCAATTCCTCTGACTGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTGAATTCACACCTGCAGAAGGCCACGAAATCAATTCCTCTGACTGG  450

seq1  ATTTTAAAGGGGACTAGGTGACTTTGTGAGGAATAATATTTGAAGCTGCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTAAAGGGGACTAGGTGACTTTGTGAGGAATAATATTTGAAGCTGCT  500

seq1  GGGGCTGTGTATCTTCTGTTTGGGGTCAAGAACTGATTGTCTGAAAGCTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCTGTGTATCTTCTGTTTGGGGTCAAGAACTGATTGTCTGAAAGCTA  550

seq1  GAGGGAAGCAAGGCCAGGAAGTCAGGCTCTGTCTGTGATAAGACTGAATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGAAGCAAGGCCAGGAAGTCAGGCTCTGTCTGTGATAAGACTGAATT  600

seq1  GCACAGCGCATGAGAATATCACAGCTACTTTCCTCTAAAACATCCCCGGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACAGCGCATGAGAATATCACAGCTACTTTCCTCTAAAACATCCCCGGT  650

seq1  CATCAAGAAACCCAACAGGAGGCACTTGGCTCTGAGATTGATAGTAAATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAAGAAACCCAACAGGAGGCACTTGGCTCTGAGATTGATAGTAAATG  700

seq1  CTGTCTTCTCTCCTGCCTTGGCATTTAGTATGTAGAAGGACCAGGAACCG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTTCTCTCCTGCCTTGGCATTTAGTATGTAGAAGGACCAGGAACCG  750

seq1  AGGTTATTTAGTGTCCATCATTCTTTCCCTCATTAGTTGAACATGTGATG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTATTTAGTGTCCATCATTCTTTCCCTCATTAGTTGAACATGTGATG  800

seq1  AGGAAATGCCTGCCATGCCTGTAGCATGTAGCATGTAACACGTGTGCATG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAATGCCTGCCATGCCTGTAGCATGTAGCATGTAACACGTGTGCATG  850

seq1  TGAGCACAGTAGTGTAAATGATAGGAAGTAGGGCTGAGAACAAGCCTAAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCACAGTAGTGTAAATGATAGGAAGTAGGGCTGAGAACAAGCCTAAC  900

seq1  CAGGGATAAGTATAACCTGATTCTTAATTATCTATTAGCACAGTATTTGC  950
      || |||||||||||||||||||| ||||||||||||||||||||||||||
seq2  CA-GGATAAGTATAACCTGATTC-TAATTATCTATTAGCACAGTATTTGC  948

seq1  TCTTGGTTTCTTCCACATACTTTGTCATTTCCCTGGCAAGCAAGTCCTTA  1000
      |||||||||||| |||||||||||||||||||||||| ||| ||||  | 
seq2  TCTTGGTTTCTT-CACATACTTTGTCATTTCCCTGGC-AGC-AGTC--TT  993

seq1  AGTCAAGCTCAAATCTCCCCTCTTTCAAGTCACTTGGTGTGGATCCTGCC  1050
      |||||||||||||||||||||||||| ||||||||||||| ||| ||| |
seq2  AGTCAAGCTCAAATCTCCCCTCTTTC-AGTCACTTGGTGT-GAT-CTG-C  1039

seq1  TAGTTTAATTTTCCAAATTTCCTAAATGTTAGCAATGGTTCCCTAAACCT  1100
      |||||  ||||| ||| ||||   ||||||||||   |||||||||| ||
seq2  TAGTT--ATTTT-CAACTTTC--TAATGTTAGCA--TGTTCCCTAAA-CT  1081

seq1  TGTGTCCTACCCATAAATAC  1120
      ||||| ||   |||||||||
seq2  TGTGTTCT--TCATAAATAC  1099