BAC Information

Click to search

BAC

Clone NameB6Ng01-187N01
Chromosome16 (Build37)
Map Location 84,255,978 - 84,257,119
singlet/doubletsinglet
Overlap genenone
Upstream geneEG545172, LOC100039572, EG621729, LOC640489
Downstream geneLOC665664, LOC547311, LOC100039893, LOC100039634, Mrpl39, Jam2, Atp5j, LOC100039950, Gabpa, Gm311, App
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-187N01.bB6Ng01-187N01.g
ACCGA012290GA012291
length1,142927
definitionB6Ng01-187N01.b B6Ng01-187N01.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattccttgctgtgaaggggactctctaggcaaatgtggaaaatatagt
catctttggattatcgtttctggacaagaaagctagtgcagaaggcatta
tttatctttcccttcaggctttcctgaaagaaagtaattgaagaaagctt
ctaagactatagaacacacacacacacacacacacacacacacacacaca
cacacacgacaataagaatgtttctaacttctcccaagaacaaatggcct
gaagagcaatgaaagagatagacacgtgatagaaaacacttatcggtttc
tcctttgcacagccctcctgcagcctgccccacttacaagaactctgttc
aaaaaaccccccagaggtcacttagagccacaaccaggaggggaggttca
taatcctgattcagctgtgtggcactgcttgccttttgtgaattctgagt
aaggctctattagaactatagtgtgtctcttggggcactttggtggaatt
taaaatatttctacacattaaaaattggtacttctttcagtaatataatc
atgttatgacacagaaaagccttagaaaatggactgagaattttttttta
ttttgttaaaatgattttacaacagtgggatatttattgtcaattacaag
tccttcaaagtcttctcggtatgattaaataaagaatatttttaattcat
tgggactctgagataagccacttctcatagtaaacttgtgaactggtacc
tgtctctatataccaagctgtttctaaaatctttttattttcacacagct
agtatcaataacttttcacctaatccctaaaaattccttaagcatgccag
tacaagttgggtactttaacaccccatttgatccaattattttaatatga
atcagtgtgtagggcacaaataagttataacagcagttaacactttacct
gttaaacatagatctatgaaaactgatttttaggatgtcagtaaaatatt
caatgattatgttaaataaaaagactaataattctggaataaatggggtt
tccattagtgtgctttaaatgaaattattaaaaatattgtttaatgcaga
ttaaaatgaattaagttagagaattcacccctcaaggtatag
gaattctggctaataactgtagtcatgatgggcactttaggttcctagtg
tttcttcaagtcatgctttgtactctgatcagtatctctgatttttttct
tgttttatcagtttttttttctttatgaatttgactttcattacatacaa
caaataagtaaaatcatgtaactttgatctgtgtttgtctggcttacttt
gcttagtctaatgtcttaaagtttcatctaaaatattacaacagtagaat
ttaattcttttttaaaggatgaaaaacctctatacatcacactttcctct
tgcttggcatctaggctgttttaatttcctttttattgcaatactaatac
aacagaaagtatacatgtgcatatgaccataattttcccccttgggataa
attgcctacaaaaggatttctgaatcttacaatatttctattttttcagc
attttttggaaaccttagtattgttttccacatttgctatatcattgtac
actctcaccaaaaagattccctttacttcatatccgcagaaacacttaat
ggtatttggcttcgctatcctgtgtaattttgacctacatttctttcata
gttagagatatccatcaatcacatctgctgtggctatttgttatggcatc
attgaacaaacttctgttcagctaatttgaacaaactatctgttctgtac
agataggctatttgcatgtttttatcattgtcttctgcaatactgcaata
ggatccgatatatatatatacacacacacacaacatatatatattatatt
ataataatatagtatatactatattatatatagtatatatttatatatag
tatatattaaattatatatatatgatttatttatgattgtgggttacggt
caaatgctattcgcgcttccctgagcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_84255978_84257119
seq2: B6Ng01-187N01.b_48_1189

seq1  GAATTCCTTGCTGTGAAGGGGACTCTCTAGGCAAATGTGGAAAATATAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTGCTGTGAAGGGGACTCTCTAGGCAAATGTGGAAAATATAGT  50

seq1  CATCTTTGGATTATCGTTTCTGGACAAGAAAGCTAGTGCAGAAGGCATTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTTTGGATTATCGTTTCTGGACAAGAAAGCTAGTGCAGAAGGCATTA  100

seq1  TTTATCTTTCCCTTCAGGCTTTCCTGAAAGAAAGTAATTGAAGAAAGCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATCTTTCCCTTCAGGCTTTCCTGAAAGAAAGTAATTGAAGAAAGCTT  150

seq1  CTAAGACTATAGAACACACACACACACACACACACACACACACACACACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGACTATAGAACACACACACACACACACACACACACACACACACACA  200

seq1  CACACACGACAATAAGAATGTTTCTAACTTCTCCCAAGAACAAATGGCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACGACAATAAGAATGTTTCTAACTTCTCCCAAGAACAAATGGCCT  250

seq1  GAAGAGCAATGAAAGAGATAGACACGTGATAGAAAACACTTATCGGTTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGCAATGAAAGAGATAGACACGTGATAGAAAACACTTATCGGTTTC  300

seq1  TCCTTTGCACAGCCCTCCTGCAGCCTGCCCCACTTACAAGAACTCTGTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTGCACAGCCCTCCTGCAGCCTGCCCCACTTACAAGAACTCTGTTC  350

seq1  AAAAAACCCCCCAGAGGTCACTTAGAGCCACAACCAGGAGGGGAGGTTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAACCCCCCAGAGGTCACTTAGAGCCACAACCAGGAGGGGAGGTTCA  400

seq1  TAATCCTGATTCAGCTGTGTGGCACTGCTTGCCTTTTGTGAATTCTGAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCCTGATTCAGCTGTGTGGCACTGCTTGCCTTTTGTGAATTCTGAGT  450

seq1  AAGGCTCTATTAGAACTATAGTGTGTCTCTTGGGGCACTTTGGTGGAATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCTCTATTAGAACTATAGTGTGTCTCTTGGGGCACTTTGGTGGAATT  500

seq1  TAAAATATTTCTACACATTAAAAATTGGTACTTCTTTCAGTAATATAATC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATATTTCTACACATTAAAAATTGGTACTTCTTTCAGTAATATAATC  550

seq1  ATGTTATGACACAGAAAAGCCTTAGAAAATGGACTGAGAATTTTTTTTTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTATGACACAGAAAAGCCTTAGAAAATGGACTGAGAATTTTTTTTTA  600

seq1  TTTTGTTAAAATGATTTTACAACAGTGGGATATTTATTGTCAATTACAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTTAAAATGATTTTACAACAGTGGGATATTTATTGTCAATTACAAG  650

seq1  TCCTTCAAAGTCTTCTCGGTATGATTAAATAAAGAATATTTTTAATTCAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTCAAAGTCTTCTCGGTATGATTAAATAAAGAATATTTTTAATTCAT  700

seq1  TGGGACTCTGAGATAAGCCACTTCTCATAGTAAACTTGTGAACTGGTACC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGACTCTGAGATAAGCCACTTCTCATAGTAAACTTGTGAACTGGTACC  750

seq1  TGTCTCTATATACCAAGCTGTTTCTAAAATCTTTTTATTTTCACACAGCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTCTATATACCAAGCTGTTTCTAAAATCTTTTTATTTTCACACAGCT  800

seq1  AGTATCAATAACTTTTCACCTAATCCCTAAAAATTCCTTAAGCATGCCAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATCAATAACTTTTCACCTAATCCCTAAAAATTCCTTAAGCATGCCAG  850

seq1  TACAAGTTGGGTACTTTAACACCCCATTTGATCCAATTATTTTAATATGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAGTTGGGTACTTTAACACCCCATTTGATCCAATTATTTTAATATGA  900

seq1  ATCAGTGTGTAGGGCACAAATAAAGTTATAACAGCAGTTAACACTTTACC  950
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  ATCAGTGTGTAGGGCACAAAT-AAGTTATAACAGCAGTTAACACTTTACC  949

seq1  TGTTAAACATAGATCTATGAAAACTGATTTTTAGGATGTCAGTAAAATAT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAAACATAGATCTATGAAAACTGATTTTTAGGATGTCAGTAAAATAT  999

seq1  TCAATGA-TATGTTAAATAAAAGAACTAATAAATTCTTGGAATAAAATGG  1049
      ||||||| ||||||||||||||  |||||| ||||| |||||||||  ||
seq2  TCAATGATTATGTTAAATAAAAAGACTAAT-AATTC-TGGAATAAATGGG  1047

seq1  GTTTTCATTAAGTGTTGCTTAAAATGAAATTATTAAAAATATTGTTTAAT  1099
      |||| |||| |||| ||||| |||||||||||||||||||||||||||||
seq2  GTTTCCATT-AGTG-TGCTTTAAATGAAATTATTAAAAATATTGTTTAAT  1095

seq1  GCAGATTAAAATG-ATTAAG-TAGAGATGTCA-CCCTC-AGGTATAG  1142
      ||||||||||||| |||||| ||||||  ||| ||||| ||||||||
seq2  GCAGATTAAAATGAATTAAGTTAGAGAATTCACCCCTCAAGGTATAG  1142