BAC Information

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BAC

Clone NameB6Ng01-188B16
Chromosome16 (Build37)
Map Location 87,105,485 - 87,214,831
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100039780
Downstream geneN6amt1, Zfp294, ORF5, LOC100040088, Usp16, Cct8, B130034C11Rik, LOC435486, ORF63, Bach1, LOC100039901, Grik1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-188B16.bB6Ng01-188B16.g
ACCGA012499GA012500
length1,147647
definitionB6Ng01-188B16.b B6Ng01-188B16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(87,105,485 - 87,106,634)(87,214,268 - 87,214,831)
sequence
gaattctgatacaagcacctactgtgtgtgctggaaatcattataaattt
cacaataaagcactaagaaatacattatcctgcccatttgggggatgaaa
aagttcaatcaaatactgtgcaataaaaggtatgtcctgagttcaaatac
aagcccatttgctatcaaagcctacatacaacattccattctcttgttcc
cctagaggctgatgccaatttctttccagcttggaacagcttttcctaaa
atgcctccttccaccctgctgcttttgtaatacagtggatggtcagaagt
gaaagcctttgtcaatgcgtcagaaccatgcagggctctcggcacttgtc
cttgatttatttcttatacaagactgtatgtataactgccctgagggcaa
ataattacctttaatctgtactgaagtaaggccatgtccttgaatactgc
attcctactgatacacttaccagcaaaagccatatgtaagtttactgtcc
ggcccttgatatgtgcttgctcatagcccttcagtacctctcctaaggca
aatcaagttttctttttggtaaccaaaagcttgcaaagcacttccttggc
atgtgacatggtgcttggatgtgtttccatacactagacaatatactgtc
cgattatatataggcccagactttcattttcctataacaacagcctgcct
catcaaagttcagggaccattgtgggagagaagatgggaggagagaaagc
cagagcagatacatgactacaaggaaatcttgtcttctggatacacgaga
aaatcctcttgtaaacccacagtgatggtgacagcatgcataatgcttct
gcaagtccaagccaatcaatcaatcaattggattgaagtccagttcaatc
aaggagaatgaagctggacacacagtccacacctagccagggagctatgg
gtaattttggtctggaagagggagagacggttttctctaagagtgtagcc
tatagttacgtcgaccatattccagtgaagaccacacatgcagaatgttt
ggagcagcataagtggtctggaggctgtgaaaaggtggtgggggttaccc
aatctgctgagaaagaagaaggggaggtatggcaagactagcaaaaa

gaattccatccttaaccaagaagttatttgtcattgatacttacttgata
tcaatgtttagtatttatcaatggagtgtcactgggtgtatcaaccacac
tttggagaagacctcatgtctaggagtacaaaatgcaatctatgcttttt
gtgggctttttgttttgtttacttgttgttgtttgtcttattgtactgga
ggaatgaacgtcaattagagaatgcctccataagaagggctgtagacaag
tctgtagggcattctcttaagtgattgatgggggagggcccagcccattg
tgggtggggctattcctgggctggtggtcctgggttttataagaaagcag
gttgagcaagccatggtgaccaagccagtaagtagcacccctccatgttc
tctgcatcagcgcttgcctccgggttcctgctctatttgagttactgtcc
tgattttcttcaatgataaactgtagtgtggaagtttacattcaaataaa
ctcttttctttcctacttgatttgctcattgtgtttcatcatagtgatag
taatcctgactagaatatttactgatctttcttttcctcctatttttcct
ccacttttactttgttgtgattttttttttggtgagggagggaggga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_87105485_87106634
seq2: B6Ng01-188B16.b_46_1192

seq1  GAATTCTGATACAAGCACCTACTGTGTGTGCTGGAAATCATTATAAATTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGATACAAGCACCTACTGTGTGTGCTGGAAATCATTATAAATTT  50

seq1  CACAATAAAGCACTAAGAAATACATTATCCTGCCCATTTGGGGGATGAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAATAAAGCACTAAGAAATACATTATCCTGCCCATTTGGGGGATGAAA  100

seq1  AAGTTCAATCAAATACTGTGCAATAAAAGGTATGTCCTGAGTTCAAATAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTCAATCAAATACTGTGCAATAAAAGGTATGTCCTGAGTTCAAATAC  150

seq1  AAGCCCATTTGCTATCAAAGCCTACATACAACATTCCATTCTCTTGTTCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCCATTTGCTATCAAAGCCTACATACAACATTCCATTCTCTTGTTCC  200

seq1  CCTAGAGGCTGATGCCAATTTCTTTCCAGCTTGGAACAGCTTTTCCTAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGAGGCTGATGCCAATTTCTTTCCAGCTTGGAACAGCTTTTCCTAAA  250

seq1  ATGCCTCCTTCCACCCTGCTGCTTTTGTAATACAGTGGATGGTCAGAAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCTCCTTCCACCCTGCTGCTTTTGTAATACAGTGGATGGTCAGAAGT  300

seq1  GAAAGCCTTTGTCAATGCGTCAGAACCATGCAGGGCTCTCGGCACTTGTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGCCTTTGTCAATGCGTCAGAACCATGCAGGGCTCTCGGCACTTGTC  350

seq1  CTTGATTTATTTCTTATACAAGACTGTATGTATAACTGCCCTGAGGGCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGATTTATTTCTTATACAAGACTGTATGTATAACTGCCCTGAGGGCAA  400

seq1  ATAATTACCTTTAATCTGTACTGAAGTAAGGCCATGTCCTTGAATACTGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTACCTTTAATCTGTACTGAAGTAAGGCCATGTCCTTGAATACTGC  450

seq1  ATTCCTACTGATACACTTACCAGCAAAAGCCATATGTAAGTTTACTGTCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCTACTGATACACTTACCAGCAAAAGCCATATGTAAGTTTACTGTCC  500

seq1  GGCCCTTGATATGTGCTTGCTCATAGCCCTTCAGTACCTCTCCTAAGGCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCTTGATATGTGCTTGCTCATAGCCCTTCAGTACCTCTCCTAAGGCA  550

seq1  AATCAAGTTTTCTTTTTGGTAACCAAAAGCTTGCAAAGCACTTCCTTGGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAAGTTTTCTTTTTGGTAACCAAAAGCTTGCAAAGCACTTCCTTGGC  600

seq1  ATGTGACATGGTGCTTGGATGTGTTTCCATACACTAGACAATATACTGTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGACATGGTGCTTGGATGTGTTTCCATACACTAGACAATATACTGTC  650

seq1  CGATTATATATAGGCCCAGACTTTCATTTTCCTATAACAACAGCCTGCCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGATTATATATAGGCCCAGACTTTCATTTTCCTATAACAACAGCCTGCCT  700

seq1  CATCAAAGTTCAGGGACCATTGTGGGAGAGAAGATGGGAGGAGAGAAAGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAAAGTTCAGGGACCATTGTGGGAGAGAAGATGGGAGGAGAGAAAGC  750

seq1  CAGAGCAGATACATGACTACAAGGAAATCTTGTCTTCTGGATACACGAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGCAGATACATGACTACAAGGAAATCTTGTCTTCTGGATACACGAGA  800

seq1  AAATCCTCTTGTAAACCCACAGTGATGGTGACAGCATGCATAATGCTTCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCCTCTTGTAAACCCACAGTGATGGTGACAGCATGCATAATGCTTCT  850

seq1  GCAAGTCCAAGCCAATCAATCAATCAATTGGATTGAAGTCCAGTTCAATC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGTCCAAGCCAATCAATCAATCAATTGGATTGAAGTCCAGTTCAATC  900

seq1  AAGGAGAATGAAGCTGGACACACAGTCCACACCTAGCCAGGGAGCTATGG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAGAATGAAGCTGGACACACAGTCCACACCTAGCCAGGGAGCTATGG  950

seq1  GTAATTTTGGTCTGGAAGAGGGAGAGACGGTTTTCTCTAAGAGTGTAGCC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATTTTGGTCTGGAAGAGGGAGAGACGGTTTTCTCTAAGAGTGTAGCC  1000

seq1  TATAGTTACGTCGACCATATTCCAGTGAAAGACCACACATGCAGGAATGT  1050
      ||||||||||||||||||||||||||| ||||||||||||||| ||||||
seq2  TATAGTTACGTCGACCATATTCCAGTG-AAGACCACACATGCA-GAATGT  1048

seq1  TT-GAGCAGCATAAATTGGTCTTGGAGGCTGTGAAAAGGT-GTGGGG--T  1096
      || ||||||||| || ||||| |||||||||||||||||| ||||||  |
seq2  TTGGAGCAGCAT-AAGTGGTC-TGGAGGCTGTGAAAAGGTGGTGGGGGTT  1096

seq1  ACACAAATCTGGCTGAGAAAAGAAGGAGGGGA-GTATGGGAAGAATTAGC  1145
      || | ||||| |||||| ||||||| |||||| |||||| ||| | ||||
seq2  AC-CCAATCT-GCTGAG-AAAGAAGAAGGGGAGGTATGGCAAG-ACTAGC  1142

seq1  AAAAA  1150
      |||||
seq2  AAAAA  1147


seq1: chr16_87214268_87214831
seq2: B6Ng01-188B16.g_145_708 (reverse)

seq1  TCCCTCCCTCCCTCACCAAAAAAAAAATCACAACAAAGTAAAAGTGGAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTCCCTCCCTCACCAAAAAAAAAATCACAACAAAGTAAAAGTGGAGG  50

seq1  AAAAATAGGAGGAAAAGAAAGATCAGTAAATATTCTAGTCAGGATTACTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATAGGAGGAAAAGAAAGATCAGTAAATATTCTAGTCAGGATTACTA  100

seq1  TCACTATGATGAAACACAATGAGCAAATCAAGTAGGAAAGAAAAGAGTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTATGATGAAACACAATGAGCAAATCAAGTAGGAAAGAAAAGAGTTT  150

seq1  ATTTGAATGTAAACTTCCACACTACAGTTTATCATTGAAGAAAATCAGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGAATGTAAACTTCCACACTACAGTTTATCATTGAAGAAAATCAGGA  200

seq1  CAGTAACTCAAATAGAGCAGGAACCCGGAGGCAAGCGCTGATGCAGAGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAACTCAAATAGAGCAGGAACCCGGAGGCAAGCGCTGATGCAGAGAA  250

seq1  CATGGAGGGGTGCTACTTACTGGCTTGGTCACCATGGCTTGCTCAACCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGAGGGGTGCTACTTACTGGCTTGGTCACCATGGCTTGCTCAACCTG  300

seq1  CTTTCTTATAAAACCCAGGACCACCAGCCCAGGAATAGCCCCACCCACAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTTATAAAACCCAGGACCACCAGCCCAGGAATAGCCCCACCCACAA  350

seq1  TGGGCTGGGCCCTCCCCCATCAATCACTTAAGAGAATGCCCTACAGACTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCTGGGCCCTCCCCCATCAATCACTTAAGAGAATGCCCTACAGACTT  400

seq1  GTCTACAGCCCTTCTTATGGAGGCATTCTCTAATTGACGTTCATTCCTCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTACAGCCCTTCTTATGGAGGCATTCTCTAATTGACGTTCATTCCTCC  450

seq1  AGTACAATAAGACAAACAACAACAAGTAAACAAAACAAAAAGCCCACAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACAATAAGACAAACAACAACAAGTAAACAAAACAAAAAGCCCACAAA  500

seq1  AAGCATAGATTGCATTTTGTACTCCTAGACATGAGGTCTTCTCCAAAGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCATAGATTGCATTTTGTACTCCTAGACATGAGGTCTTCTCCAAAGTG  550

seq1  TGGTTGATACACCC  564
      ||||||||||||||
seq2  TGGTTGATACACCC  564


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