BAC Information

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BAC

Clone NameB6Ng01-188D02
Chromosome16 (Build37)
Map Location 94,503,416 - 94,643,898
singlet/doubletdoublet
Overlap geneHlcs, LOC100040857, Dscr6, LOC545178, Pigp, Ttc3
Upstream geneSetd4, LOC670912, Cbr1, EG435489, Cbr3, Dopey2, Morc3, Chaf1b, Cldn14, Sim2, LOC622832
Downstream geneDscr3, Dyrk1a, Kcnj6, LOC666201, Kcnj15, Erg
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-188D02.bB6Ng01-188D02.g
ACCGA012562GA012563
length1,1211,076
definitionB6Ng01-188D02.b B6Ng01-188D02.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(94,642,777 - 94,643,898)(94,503,416 - 94,504,497)
sequence
gaattccagggagacgactaattaaagtctttgccttttcaaagtgatta
agagcttcgagaaatctaaagacatatttgggaagaaagaagatattaaa
gatgtggcataatattttattccaaagtaattcaccaagacttcaagact
gctgaaaagaccacatatgataaatcgatagacataaatatccaatgtaa
tgtattttctttttaagtaactaagacattattgctacttgttatagaaa
tgtaaatgaagcacatttctgtctagaatctcctacatccctgatcccaa
tcagacagtaactagaaactaaaagtacttactttcgtctctaaaatctg
caaagaagcagggtgtgggggcgcaggcctttactccgggcacttgggag
gcagaggcaggcggatttctgagttcaaggccagcctggtctacagagtg
agttccaggacagccagggctatacagagaaaccctgtctcgaaaaacca
aaacaaaaatctgcaaagaaggtgtaggcacacactatattagagaacct
aaaatcataaaagttcttctaaaaagtagaaaaagatttaaggttaatca
agtcctatgtgatattcgattatcaagaatttttcttctgtaaaatcatc
taaaataattcaagggtccaaacagacttgtcttaaatcctaagccagta
tcatgtctcctcaggccacacagccattttggaagacaagactgagaagc
aggaaacacttccagaacaacaaagtaaactagagcaagtgtttcaacca
cggagaggtgtagcctaggctcgtggctgaacttgcagtctatgaacatg
tgaattcctcgggtcctatgcactttgaggaggcagcttctaaagcaaat
cacagccatgagaacaagccacaccaaagacggacagacagacatcacag
ccaggatctgctgcgctaacatgaagccctgagttcagattcccagcaca
agtctgtaacccctgtgtacagagggggaaggagaagaggggagttccgt
agaccttggggctgactggtagccaaggtagcagctcagtttcactggca
gaactggtctcagaatactga
gaattctccttaatagggacggggtttcgttttctcgctctcttgctact
tacactcttgctcctgaagatgtaagcaataaagttttgccgcagaagat
tctggtctgttgtgttcttcctggccgggcgtgagaacgcgtttaataac
aagagggtaacatggcaccggtcggcatctgtgcataggggttattctct
gctgttacctctgctgcctcccagggtcgggaacagtgtttgatttaggg
tcaggcatgaaatgtcctcaccaggctcattcactgaacacttggtcctc
agcggcgggcgctactttgagaggccgtgggaattttagaagttagttag
gaccaaactgtaggtgactatgggtaggtccttgggcactttgtcttgtc
tcagacccccgcctccccaacccctaactagccccacccccctctctcat
caggtgaatgaacatgcctgccagagtccagggcagagttccagttccca
attaaagtaggtgtggcctttttgactaggcagtgattctcaacctgtgg
gtcaagacccctttgggggttgcatatcagatattctgcaatatcatatg
cactatgattcataaagaaattacagttataaagagcaatgaaataatct
atggctgagggtcaccacagcttgtgtttgtcacacacttaagaatattc
agttctgagccgggcagtggtggtacacacctttaatcccagcactcggg
aggcagaggcaggcggatttctgagtttgaggccagcctggtctacagag
tgagttccaggacagccagagaaaccctgtctcgaaaaaacaaaaacaaa
cacgacaacaaaaaatgagcattcaattctgccacatcgtaaaccagtag
aacatactcatgaattaaacttcgtatatttttatttttttttagaagtt
ttctttcatgtgtatgggagttttgcctgcatgcatgtttgtgtgcactt
gcgtgcctgtgccctcagagccaaaacaggccatcagatattctgggctg
gattacagatgctgttaaggtgctga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_94642777_94643898
seq2: B6Ng01-188D02.b_46_1166 (reverse)

seq1  TCAGTA-TCTGAGA-CAG-TCTGCCAGTGAACCTGGAGCTTGCTAACCTG  47
      |||||| ||||||| ||| |||||||||||| || |||| |||| |||| 
seq2  TCAGTATTCTGAGACCAGTTCTGCCAGTGAAACT-GAGC-TGCT-ACCTT  47

seq1  GGCTGGCCAGTCAGCCCCAGGGTCTACGG-ACT-CCCTCTTCTCCCTTCC  95
      ||||  ||||||||||||| ||||||||| ||| ||||||||| ||||||
seq2  GGCT-ACCAGTCAGCCCCAAGGTCTACGGAACTCCCCTCTTCT-CCTTCC  95

seq1  CCCTCTGTAACACAGGGGTTACAGACTTGTGCTGGGAATCTGAACTCAGG  145
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCTGT-ACACAGGGGTTACAGACTTGTGCTGGGAATCTGAACTCAGG  144

seq1  GCTTCATGTTAGCGCAGCAGATCCTGGCTGTGATGTCTGTCTGTCCGTCT  195
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCATGTTAGCGCAGCAGATCCTGGCTGTGATGTCTGTCTGTCCGTCT  194

seq1  TTGGTGTGGCTTGTTCTCATGGCTGTGATTTGCTTTAGAAGCTGCCTCCT  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTGTGGCTTGTTCTCATGGCTGTGATTTGCTTTAGAAGCTGCCTCCT  244

seq1  CAAAGTGCATAGGACCCGAGGAATTCACATGTTCATAGACTGCAAGTTCA  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGTGCATAGGACCCGAGGAATTCACATGTTCATAGACTGCAAGTTCA  294

seq1  GCCACGAGCCTAGGCTACACCTCTCCGTGGTTGAAACACTTGCTCTAGTT  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACGAGCCTAGGCTACACCTCTCCGTGGTTGAAACACTTGCTCTAGTT  344

seq1  TACTTTGTTGTTCTGGAAGTGTTTCCTGCTTCTCAGTCTTGTCTTCCAAA  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTTGTTGTTCTGGAAGTGTTTCCTGCTTCTCAGTCTTGTCTTCCAAA  394

seq1  ATGGCTGTGTGGCCTGAGGAGACATGATACTGGCTTAGGATTTAAGACAA  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCTGTGTGGCCTGAGGAGACATGATACTGGCTTAGGATTTAAGACAA  444

seq1  GTCTGTTTGGACCCTTGAATTATTTTAGATGATTTTACAGAAGAAAAATT  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGTTTGGACCCTTGAATTATTTTAGATGATTTTACAGAAGAAAAATT  494

seq1  CTTGATAATCGAATATCACATAGGACTTGATTAACCTTAAATCTTTTTCT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGATAATCGAATATCACATAGGACTTGATTAACCTTAAATCTTTTTCT  544

seq1  ACTTTTTAGAAGAACTTTTATGATTTTAGGTTCTCTAATATAGTGTGTGC  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTTAGAAGAACTTTTATGATTTTAGGTTCTCTAATATAGTGTGTGC  594

seq1  CTACACCTTCTTTGCAGATTTTTGTTTTGGTTTTTCGAGACAGGGTTTCT  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACACCTTCTTTGCAGATTTTTGTTTTGGTTTTTCGAGACAGGGTTTCT  644

seq1  CTGTATAGCCCTGGCTGTCCTGGAACTCACTCTGTAGACCAGGCTGGCCT  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTATAGCCCTGGCTGTCCTGGAACTCACTCTGTAGACCAGGCTGGCCT  694

seq1  TGAACTCAGAAATCCGCCTGCCTCTGCCTCCCAAGTGCCCGGAGTAAAGG  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACTCAGAAATCCGCCTGCCTCTGCCTCCCAAGTGCCCGGAGTAAAGG  744

seq1  CCTGCGCCCCCACACCCTGCTTCTTTGCAGATTTTAGAGACGAAAGTAAG  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCGCCCCCACACCCTGCTTCTTTGCAGATTTTAGAGACGAAAGTAAG  794

seq1  TACTTTTAGTTTCTAGTTACTGTCTGATTGGGATCAGGGATGTAGGAGAT  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTTTAGTTTCTAGTTACTGTCTGATTGGGATCAGGGATGTAGGAGAT  844

seq1  TCTAGACAGAAATGTGCTTCATTTACATTTCTATAACAAGTAGCAATAAT  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGACAGAAATGTGCTTCATTTACATTTCTATAACAAGTAGCAATAAT  894

seq1  GTCTTAGTTACTTAAAAAGAAAATACATTACATTGGATATTTATGTCTAT  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTAGTTACTTAAAAAGAAAATACATTACATTGGATATTTATGTCTAT  944

seq1  CGATTTATCATATGTGGTCTTTTCAGCAGTCTTGAAGTCTTGGTGAATTA  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGATTTATCATATGTGGTCTTTTCAGCAGTCTTGAAGTCTTGGTGAATTA  994

seq1  CTTTGGAATAAAATATTATGCCACATCTTTAATATCTTCTTTCTTCCCAA  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGGAATAAAATATTATGCCACATCTTTAATATCTTCTTTCTTCCCAA  1044

seq1  ATATGTCTTTAGATTTCTCGAAGCTCTTAATCACTTTGAAAAGGCAAAGA  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGTCTTTAGATTTCTCGAAGCTCTTAATCACTTTGAAAAGGCAAAGA  1094

seq1  CTTTAATTAGTCGTCTCCCTGGAATTC  1122
      |||||||||||||||||||||||||||
seq2  CTTTAATTAGTCGTCTCCCTGGAATTC  1121

seq1: chr16_94503416_94504497
seq2: B6Ng01-188D02.g_62_1137

seq1  GAATTCTCCTTAATAGGGACGGGGTTTCGTTTTCTCGCTCTCTTGCTACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCTTAATAGGGACGGGGTTTCGTTTTCTCGCTCTCTTGCTACT  50

seq1  TACACTCTTGCTCCTGAAGATGTAAGCAATAAAGTTTTGCCGCAGAAGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACTCTTGCTCCTGAAGATGTAAGCAATAAAGTTTTGCCGCAGAAGAT  100

seq1  TCTGGTCTGTTGTGTTCTTCCTGGCCGGGCGTGAGAACGCGTTTAATAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGTCTGTTGTGTTCTTCCTGGCCGGGCGTGAGAACGCGTTTAATAAC  150

seq1  AAGAGGGTAACATGGCACCGGTCGGCATCTGTGCATAGGGGTTATTCTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGGGTAACATGGCACCGGTCGGCATCTGTGCATAGGGGTTATTCTCT  200

seq1  GCTGTTACCTCTGCTGCCTCCCAGGGTCGGGAACAGTGTTTGATTTAGGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTTACCTCTGCTGCCTCCCAGGGTCGGGAACAGTGTTTGATTTAGGG  250

seq1  TCAGGCATGAAATGTCCTCACCAGGCTCATTCACTGAACACTTGGTCCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGCATGAAATGTCCTCACCAGGCTCATTCACTGAACACTTGGTCCTC  300

seq1  AGCGGCGGGCGCTACTTTGAGAGGCCGTGGGAATTTTAGAAGTTAGTTAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGGCGGGCGCTACTTTGAGAGGCCGTGGGAATTTTAGAAGTTAGTTAG  350

seq1  GACCAAACTGTAGGTGACTATGGGTAGGTCCTTGGGCACTTTGTCTTGTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCAAACTGTAGGTGACTATGGGTAGGTCCTTGGGCACTTTGTCTTGTC  400

seq1  TCAGACCCCCGCCTCCCCAACCCCTAACTAGCCCCACCCCCCTCTCTCAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGACCCCCGCCTCCCCAACCCCTAACTAGCCCCACCCCCCTCTCTCAT  450

seq1  CAGGTGAATGAACATGCCTGCCAGAGTCCAGGGCAGAGTTCCAGTTCCCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTGAATGAACATGCCTGCCAGAGTCCAGGGCAGAGTTCCAGTTCCCA  500

seq1  ATTAAAGTAGGTGTGGCCTTTTTGACTAGGCAGTGATTCTCAACCTGTGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAAGTAGGTGTGGCCTTTTTGACTAGGCAGTGATTCTCAACCTGTGG  550

seq1  GTCAAGACCCCTTTGGGGGTTGCATATCAGATATTCTGCAATATCATATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAAGACCCCTTTGGGGGTTGCATATCAGATATTCTGCAATATCATATG  600

seq1  CACTATGATTCATAAAGAAATTACAGTTATAAAGAGCAATGAAATAATCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTATGATTCATAAAGAAATTACAGTTATAAAGAGCAATGAAATAATCT  650

seq1  ATGGCTGAGGGTCACCACAGCTTGTGTTTGTCACACACTTAAGAATATTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCTGAGGGTCACCACAGCTTGTGTTTGTCACACACTTAAGAATATTC  700

seq1  AGTTCTGAGCCGGGCAGTGGTGGTACACACCTTTAATCCCAGCACTCGGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCTGAGCCGGGCAGTGGTGGTACACACCTTTAATCCCAGCACTCGGG  750

seq1  AGGCAGAGGCAGGCGGATTTCTGAGTTTGAGGCCAGCCTGGTCTACAGAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGAGGCAGGCGGATTTCTGAGTTTGAGGCCAGCCTGGTCTACAGAG  800

seq1  TGAGTTCCAGGACAGCCAGAGAAACCCTGTCTCGAAAAAAACAAAAACAA  850
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  TGAGTTCCAGGACAGCCAGAGAAACCCTGTCTCG-AAAAAACAAAAACAA  849

seq1  ACAACGACAACAAAAAATGAGCATTCAATTCTGCCACATCGTAAACCAGT  900
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  AC-ACGACAACAAAAAATGAGCATTCAATTCTGCCACATCGTAAACCAGT  898

seq1  AGAACATACTCATGAATTAAACTCCGTATATTTT--ATTTTTTTTAGAAG  948
      ||||||||||||||||||||||| ||||||||||   |||||||||||||
seq2  AGAACATACTCATGAATTAAACTTCGTATATTTTTATTTTTTTTTAGAAG  948

seq1  TTTTTCTTTCATGTGTATGGGAGTTTTGCCTGCATGCATGTTTGTGTGCC  998
       ||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  -TTTTCTTTCATGTGTATGGGAGTTTTGCCTGCATGCATGTTTGTGTG-C  996

seq1  ACTTGCGTGCCTGGTGCCCTCAGAGGCCAAAACAGGGCATCAGATATCCT  1048
      |||||||||||| ||||||||||| ||||||||||| |||||||||| ||
seq2  ACTTGCGTGCCT-GTGCCCTCAGA-GCCAAAACAGGCCATCAGATATTCT  1044

seq1  GGGCCTGGAATTACAGATGGCTGTTAA-GTGCTGA  1082
      ||| |||| ||||||||| |||||||| |||||||
seq2  GGG-CTGG-ATTACAGAT-GCTGTTAAGGTGCTGA  1076