BAC Information

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BAC

Clone NameB6Ng01-188E07
Chromosome16 (Build37)
Map Location 87,049,336 - 87,204,364
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100040025, LOC100039780
Downstream geneN6amt1, Zfp294, ORF5, LOC100040088, Usp16, Cct8, B130034C11Rik, LOC435486, ORF63, Bach1, LOC100039901, Grik1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-188E07.bB6Ng01-188E07.g
ACCGA012610GA012611
length1,1741,118
definitionB6Ng01-188E07.b B6Ng01-188E07.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(87,049,336 - 87,050,528)(87,203,245 - 87,204,364)
sequence
gaattcagtcgttttcagtgctaaaggccatgcagtggctgaaatttcct
aaaatgaaacggtgttcatcccatctctcatggagtggtgagaacctgca
gcgtacatgcatcagttaaactcctcatggtgtgccaacaccaaaccata
gctactttaacttcggatctgtcatacaacgttttcatccgggtaacaga
ggcggtctatggaatgtttactatgtctaaaatctttagagcgtgctgtc
tataatgccttactggaaattcacctctgagctagtagtagcttaacatc
acgtggccgctttgggacgagtccaagaccagaacccgaacccctttccg
ctcagtggtgctccttcctccaacaccacacttttgctttttgaaggaag
tgtccatgttttagcacaacccaagccgctccgtaatcaggatgctgact
acaaatctacttttcttaaggacaaggtgtgaataacctctgaataaagg
gccgtgcgatggcctgctgtaggtttgaggaaactgccccctgtcgggat
gcaggcacgtggtgtttaaaagacacactgaactgttaaaagctccctga
agttcaatgaggactaaaggaggtttgcaaaatttctggtacgtggaaac
aaaacgctttgccatatgccttcttaaaaaaattattttccagctgcagt
caaattcacttttaaagactggatctgcagtatcaaacctcagcatccgg
ctactcagagatggccctagggtggatctattacaggctaaataatgtct
actaagaaactggggagctgtatttccctgcgcctctttctcaaaccccg
gcagaccaccagtgctcagtagttactgctgtgtggtaccagataaaggt
acagcaggatcgggaagtgtctgtgactccgtttaaagataaattgctac
attaacacagaagggttttgcaaaggaagcacgcaatcacgtgccatgct
tttctttttttttcttggatccaatcctgaaaataaggaagtatcctcaa
ttaattcatcttctaatgaaatggacgaattattctcccaggaacgcaca
gaaccacttccatcctcgaattgagataggaagggaatggggaccatagg
tttctgagaatctaaggatctgga
gaattcaaggtcagcctaagacacagtgagtccaggaccaggtttggtag
aaatgataatttcaggatgggggttctaaccaactagtttatctctgtgc
ttaacagaggcaggcagatctctgaattcttctgcattgtgaaaaggaaa
tgtgaaatttgctggaaacgtgttcctaaaaattaaggcgccagggttac
agggtgctgattcatagaaagatcaaaaggaatctgaaataaataactga
attgatatataaataaaaaattgggattttggtctgcatgatttgagcta
gcagaaagtgatagcagttcttcctggaatttcctgggctggagcggtgg
ctcagtggtttagagcactgactgctcttccagagctcctgagttcaagt
actgactataatttcagtttttaaacttccatatatatccactttgttaa
attcttgaatttgattctatgagaaaaaacaataggaaggagtaaggttt
taaaaccttttatattttctatctcaattttggaaatttggaaagatgta
tgatttttttttgtcaccttaaaactttcttagtgaaaatgcacattttc
tgaaatgacaaaaatttcaaaagtcatcggaaatcttacacttctctgat
gttatctcattagatatttataggttgtatccaaggagaagaatgcatta
gttttgcctgctcggtccaattgccatattctaaaaatatcactaattct
ggctgtaaatagagtgtgggactgaaatactagttcttagtaaaagaaac
ctggaagtgtttaggaaagggcatcgtgtgtgtgtgtgatatctatatct
atatattatatctatataatatacatctctgtctatctatctatctatct
atctatctatctatctatctatcaatctatctatcaatctatctattctg
cctggagcaattagtcagagcagatacccttatgctgctcataggaaaga
tttcagaaactcaggagaggtgacttattgcttcaactctgttacttctt
gattgtaaggaagactttacagtagtgtgtgaatagtatttctttattgt
catcttgaaagaaattgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_87049336_87050528
seq2: B6Ng01-188E07.b_48_1221

seq1  GAATTCAGTCGTTTTCAGTGCTAAAGGCCATGCAGTGGCTGAAATTTCCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTCGTTTTCAGTGCTAAAGGCCATGCAGTGGCTGAAATTTCCT  50

seq1  AAAATGAAACGGTGTTCATCCCATCTCTCATGGAGTGGTGAGAACCTGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGAAACGGTGTTCATCCCATCTCTCATGGAGTGGTGAGAACCTGCA  100

seq1  GCGTACATGCATCAGTTAAACTCCTCATGGTGTGCCAACACCAAACCATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGTACATGCATCAGTTAAACTCCTCATGGTGTGCCAACACCAAACCATA  150

seq1  GCTACTTTAACTTCGGATCTGTCATACAACGTTTTCATCCGGGTAACAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACTTTAACTTCGGATCTGTCATACAACGTTTTCATCCGGGTAACAGA  200

seq1  GGCGGTCTATGGAATGTTTACTATGTCTAAAATCTTTAGAGCGTGCTGTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCGGTCTATGGAATGTTTACTATGTCTAAAATCTTTAGAGCGTGCTGTC  250

seq1  TATAATGCCTTACTGGAAATTCACCTCTGAGCTAGTAGTAGCTTAACATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAATGCCTTACTGGAAATTCACCTCTGAGCTAGTAGTAGCTTAACATC  300

seq1  ACGTGGCCGCTTTGGGACGAGTCCAAGACCAGAACCCGAACCCCTTTCCG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTGGCCGCTTTGGGACGAGTCCAAGACCAGAACCCGAACCCCTTTCCG  350

seq1  CTCAGTGGTGCTCCTTCCTCCAACACCACACTTTTGCTTTTTGAAGGAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGTGGTGCTCCTTCCTCCAACACCACACTTTTGCTTTTTGAAGGAAG  400

seq1  TGTCCATGTTTTAGCACAACCCAAGCCGCTCCGTAATCAGGATGCTGACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCATGTTTTAGCACAACCCAAGCCGCTCCGTAATCAGGATGCTGACT  450

seq1  ACAAATCTACTTTTCTTAAGGACAAGGTGTGAATAACCTCTGAATAAAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATCTACTTTTCTTAAGGACAAGGTGTGAATAACCTCTGAATAAAGG  500

seq1  GCCGTGCGATGGCCTGCTGTAGGTTTGAGGAAACTGCCCCCTGTCGGGAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCGTGCGATGGCCTGCTGTAGGTTTGAGGAAACTGCCCCCTGTCGGGAT  550

seq1  GCAGGCACGTGGTGTTTAAAAGACACACTGAACTGTTAAAAGCTCCCTGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGCACGTGGTGTTTAAAAGACACACTGAACTGTTAAAAGCTCCCTGA  600

seq1  AGTTCAATGAGGACTAAAGGAGGTTTGCAAAATTTCTGGTACGTGGAAAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCAATGAGGACTAAAGGAGGTTTGCAAAATTTCTGGTACGTGGAAAC  650

seq1  AAAACGCTTTGCCATATGCCTTCTTAAAAAAATTATTTTCCAGCTGCAGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACGCTTTGCCATATGCCTTCTTAAAAAAATTATTTTCCAGCTGCAGT  700

seq1  CAAATTCACTTTTAAAGACTGGATCTGCAGTATCAAACCTCAGCATCCGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATTCACTTTTAAAGACTGGATCTGCAGTATCAAACCTCAGCATCCGG  750

seq1  CTACTCAGAGATGGCCCTAGGGTGGATCTATTACAGGCTAAATAATGTCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTCAGAGATGGCCCTAGGGTGGATCTATTACAGGCTAAATAATGTCT  800

seq1  ACTAAGAAACTGGGGAGCTGTA-TTCCCTGCGCCTCTTTCTCAAACCCCG  849
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  ACTAAGAAACTGGGGAGCTGTATTTCCCTGCGCCTCTTTCTCAAACCCCG  850

seq1  GCAGACCACCAGTGCTCAGTAGTTACTGCTGTGTGGTACCAGATAAGGTT  899
      |||||||||||||||||||||||||||||||||||||||||||||| | |
seq2  GCAGACCACCAGTGCTCAGTAGTTACTGCTGTGTGGTACCAGATAAAGGT  900

seq1  ACAGCAGGGATCGGGAAGTGTCTGTGACTCCGTTTAAAGATAAATTGCTA  949
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCA-GGATCGGGAAGTGTCTGTGACTCCGTTTAAAGATAAATTGCTA  949

seq1  CATTAACACAGAAGGGTTTTGCAAAGGAAGCACGCAATCACGTTGCCATG  999
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  CATTAACACAGAAGGGTTTTGCAAAGGAAGCACGCAATCACG-TGCCATG  998

seq1  CTTTTTCTTTTTTTTTTTTTTTTTTTTGGATCCAATTCTGAAAATAAAGG  1049
      |         |||| ||||||||| ||||||||||| |||||||| ||||
seq2  C---------TTTTCTTTTTTTTTCTTGGATCCAATCCTGAAAAT-AAGG  1038

seq1  AAGTATCCTCAA-TAAATCATCTTCCTAATGGAAATGACAGAATTATTCT  1098
      |||||||||||| ||| ||||||| ||||| ||||||   ||||||||||
seq2  AAGTATCCTCAATTAATTCATCTT-CTAAT-GAAATGGACGAATTATTCT  1086

seq1  CCCAGGGGAACAGCACAG-ACCACTTCACATCCCTCAGAATGGGAGTAGG  1147
      ||||  ||||| |||||| |||||||| ||| |||| |||| |   ||||
seq2  CCCA--GGAAC-GCACAGAACCACTTC-CAT-CCTC-GAATTGAGATAGG  1130

seq1  AAGGAAATGGGGA-CATAGTTTCCTTGGAGGATCTAAGGATCCTGGA  1193
      |||| |||||||| ||||| || ||  ||| |||||||||| |||||
seq2  AAGGGAATGGGGACCATAGGTTTCT--GAGAATCTAAGGAT-CTGGA  1174

seq1: chr16_87203245_87204364
seq2: B6Ng01-188E07.g_67_1184 (reverse)

seq1  CCAAATTCTGTCAAGATGACAATAAAG-AATACCTATCACACACTACTGT  49
      |||| |||| ||||||||||||||||| |||||   ||||||||||||||
seq2  CCAATTTCTTTCAAGATGACAATAAAGAAATACTATTCACACACTACTGT  50

seq1  AAAGTCTTCCTTTACAATCAAGAAGTAACAGAGTTGAAGCAATAAGTCAC  99
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  AAAGTCTTCC-TTACAATCAAGAAGTAACAGAGTTGAAGCAATAAGTCAC  99

seq1  CTCTTCTGAGGTTTCTGAAATCTTTTCCTATGAGCAGCATAAGGGTATCT  149
      |||| |||| |||||||||||| |||||||||||||||||||||||||||
seq2  CTCTCCTGA-GTTTCTGAAATC-TTTCCTATGAGCAGCATAAGGGTATCT  147

seq1  GCTCTGACTAATTGCTCCAGGCAGAATAGATAGATTGATAGATAGATTGA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTGACTAATTGCTCCAGGCAGAATAGATAGATTGATAGATAGATTGA  197

seq1  TAGATAGATAGATAGATAGATAGATAGATAGATAGATAGACAGAGATGTA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATAGATAGATAGATAGATAGATAGATAGATAGATAGACAGAGATGTA  247

seq1  TATTATATAGATATAATATATAGATATAGATATCACACACACACACGATG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTATATAGATATAATATATAGATATAGATATCACACACACACACGATG  297

seq1  CCCTTTCCTAAACACTTCCAGGTTTCTTTTACTAAGAACTAGTATTTCAG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTTCCTAAACACTTCCAGGTTTCTTTTACTAAGAACTAGTATTTCAG  347

seq1  TCCCACACTCTATTTACAGCCAGAATTAGTGATATTTTTAGAATATGGCA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCACACTCTATTTACAGCCAGAATTAGTGATATTTTTAGAATATGGCA  397

seq1  ATTGGACCGAGCAGGCAAAACTAATGCATTCTTCTCCTTGGATACAACCT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGACCGAGCAGGCAAAACTAATGCATTCTTCTCCTTGGATACAACCT  447

seq1  ATAAATATCTAATGAGATAACATCAGAGAAGTGTAAGATTTCCGATGACT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATATCTAATGAGATAACATCAGAGAAGTGTAAGATTTCCGATGACT  497

seq1  TTTGAAATTTTTGTCATTTCAGAAAATGTGCATTTTCACTAAGAAAGTTT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAAATTTTTGTCATTTCAGAAAATGTGCATTTTCACTAAGAAAGTTT  547

seq1  TAAGGTGACAAAAAAAAATCATACATCTTTCCAAATTTCCAAAATTGAGA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGTGACAAAAAAAAATCATACATCTTTCCAAATTTCCAAAATTGAGA  597

seq1  TAGAAAATATAAAAGGTTTTAAAACCTTACTCCTTCCTATTGTTTTTTCT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAAATATAAAAGGTTTTAAAACCTTACTCCTTCCTATTGTTTTTTCT  647

seq1  CATAGAATCAAATTCAAGAATTTAACAAAGTGGATATATATGGAAGTTTA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGAATCAAATTCAAGAATTTAACAAAGTGGATATATATGGAAGTTTA  697

seq1  AAAACTGAAATTATAGTCAGTACTTGAACTCAGGAGCTCTGGAAGAGCAG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTGAAATTATAGTCAGTACTTGAACTCAGGAGCTCTGGAAGAGCAG  747

seq1  TCAGTGCTCTAAACCACTGAGCCACCGCTCCAGCCCAGGAAATTCCAGGA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTGCTCTAAACCACTGAGCCACCGCTCCAGCCCAGGAAATTCCAGGA  797

seq1  AGAACTGCTATCACTTTCTGCTAGCTCAAATCATGCAGACCAAAATCCCA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACTGCTATCACTTTCTGCTAGCTCAAATCATGCAGACCAAAATCCCA  847

seq1  ATTTTTTATTTATATATCAATTCAGTTATTTATTTCAGATTCCTTTTGAT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTTATTTATATATCAATTCAGTTATTTATTTCAGATTCCTTTTGAT  897

seq1  CTTTCTATGAATCAGCACCCTGTAACCCTGGCGCCTTAATTTTTAGGAAC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTATGAATCAGCACCCTGTAACCCTGGCGCCTTAATTTTTAGGAAC  947

seq1  ACGTTTCCAGCAAATTTCACATTTCCTTTTCACAATGCAGAAGAATTCAG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTTTCCAGCAAATTTCACATTTCCTTTTCACAATGCAGAAGAATTCAG  997

seq1  AGATCTGCCTGCCTCTGTTAAGCACAGAGATAAACTAGTTGGTTAGAACC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCTGCCTGCCTCTGTTAAGCACAGAGATAAACTAGTTGGTTAGAACC  1047

seq1  CCCATCCTGAAATTATCATTTCTACCAAACCTGGTCCTGGACTCACTGTG  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATCCTGAAATTATCATTTCTACCAAACCTGGTCCTGGACTCACTGTG  1097

seq1  TCTTAGGCTGACCTTGAATTC  1120
      |||||||||||||||||||||
seq2  TCTTAGGCTGACCTTGAATTC  1118