BAC Information

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BAC

Clone NameB6Ng01-188G08
Chromosome16 (Build37)
Map Location 89,754,658 - 89,898,269
singlet/doubletdoublet
Overlap geneTiam1
Upstream gene2310034C09Rik, 2310057N15Rik, EG546672, EG433047, 4930553J12Rik, Krtap14, Krtap15, Krtap16-9, Krtap16-1, Krtap16-5, Krtap16-4, Krtap8-2, LOC100040191, AY026312, Krtap16-10, EG621595, LOC100040167, 1110032D16Rik, LOC100040201, Krtap6-1, LOC100040214, Krtap16-8, 1110025L11Rik, LOC100040249, LOC100040267, EG622794, LOC100040281, ENSMUSG00000044227, EG665661, LOC100040288, EG622935, EG622981, EG622998, EG623011, EG623026, LOC100040346, EG623049, LOC100040415, EG640636, LOC640652, LOC640654, LOC100040425, LOC100040374, LOC640656, LOC100040445, LOC100040456, Krtap21-1, Krtap6-2, 5430433J05Rik
Downstream geneLOC100040496, LOC640694, LOC100040440, Sod1, Sfrs15, LOC545175, Hunk, 2610039C10Rik, Mrap, 4921511H13Rik, 4931408A02Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-188G08.bB6Ng01-188G08.g
ACCGA012706GA012707
length1,159636
definitionB6Ng01-188G08.b B6Ng01-188G08.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(89,754,658 - 89,755,825)(89,897,634 - 89,898,269)
sequence
gaattcagacttgggcctggtaacattgtgggtatatcaagcccatggtt
ccccccacgcacactatgctagggtctattattacctgttatgttttatg
gtctgccttgctatcttcctatttaaattagaagattaaaaaaaagatag
aaagaatataataaggcttacagtggaatactaccacctagacatggatt
aaatgataaataatgcatttctactttggacagggtgtatgaggtatggt
tgcatcacggtagaacattaagtgtgagctaagaaggtgcatggccgtga
agttaatagagcagactgtgtaattttacattatttctgcctgtctcctg
gaattcccagggctctgagattgacattgcaatcactgaactttgacggc
accaggttgttctccataatgtgggtcagccttatgcaaccagctgaagg
ccttaactaagcccggagattggcatctctaaggaggagagaagtctccc
acagaccttgtcaatgtcattgagtccctgaatctcagattttcccagcc
agcactgtcacacgagccacttaagtcctctatggtgaattagttaatga
aatgctgtgctgttggctgtgtttctctggagaactatggcaagaactga
ccagcatctgaaacagctgcacaaacatgtgcccaggaactggtccatct
agcccaaaccagcctgctctccaccccacctctgcagctaacatatgcct
ttccgcactccttgtgagttctgtactagctcgctgcgccagtggccttc
ctctgatccccaaaaccctccttcccatgcctgtccatctcttcccacaa
ccatgcatggttttgttcctttaataactctcaagctctataaaactcac
aatagtcctgctttctttcctgtaccgtgactgatacagcaccacacgtg
tgtgtgcgcacatgtgcacacacacacacacacacacacacacacacaca
ctaatgtgcctatagaataagaccaatattgtcaacagttcttgttttct
atctcactcgtcatgtattgtcactgagatctatcccgagtgctgactgt
ccaggtgccttaagagatacccaggatggtcactggtacctaaatcgttg
acctttgcc
gaattctcactctcagatctgagccaagaacatttaacaagcaacgaaga
aatcttgggttccgcggaagagaaggattgcgaggaggctcgggggatgg
aaacagaggcgagtccccggcagctcagcacctgtcagcgagccaactcc
ctgggtgacttgtatgctcagaaaaactctggggtgaaggctaatggagg
accgaggaacagattctcaagctactgccggaatttggtgtcggatattc
ccgatcttgcaaagcataagatgccaccggctgctgccgaagagactcct
ccgtacagtaattacaacacgcttccctgtaggaagtcgcactgtctttc
cgagggtgccaccaacccacaaattagccttagcaagagcatgcaaggca
gaagagcaaaaaccacccaggtaaagcctcagagatgtttcagtattttg
gaagtggtgcgcgcctcttaaagtgcatgattttgctcttatcggtttct
ctctctctctcttttttttttttttttttgaaatcgggctgtacccgggt
ttgtctggcagctgctgcagctggcatcgcttctgctgcgcccctcttac
agttctgtgggtagggggtggagattaaggggtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_89754658_89755825
seq2: B6Ng01-188G08.b_47_1205

seq1  GAATTCAGACTTGGGCCTGGTAACATTGTGGGTATATCAAGCCCATGGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGACTTGGGCCTGGTAACATTGTGGGTATATCAAGCCCATGGTT  50

seq1  CCCCCCACGCACACTATGCTAGGGTCTATTATTACCTGTTATGTTTTATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCCACGCACACTATGCTAGGGTCTATTATTACCTGTTATGTTTTATG  100

seq1  GTCTGCCTTGCTATCTTCCTATTTAAATTAGAAGATTAAAAAAAAGATAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGCCTTGCTATCTTCCTATTTAAATTAGAAGATTAAAAAAAAGATAG  150

seq1  AAAGAATATAATAAGGCTTACAGTGGAATACTACCACCTAGACATGGATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAATATAATAAGGCTTACAGTGGAATACTACCACCTAGACATGGATT  200

seq1  AAATGATAAATAATGCATTTCTACTTTGGACAGGGTGTATGAGGTATGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGATAAATAATGCATTTCTACTTTGGACAGGGTGTATGAGGTATGGT  250

seq1  TGCATCACGGTAGAACATTAAGTGTGAGCTAAGAAGGTGCATGGCCGTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATCACGGTAGAACATTAAGTGTGAGCTAAGAAGGTGCATGGCCGTGA  300

seq1  AGTTAATAGAGCAGACTGTGTAATTTTACATTATTTCTGCCTGTCTCCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAATAGAGCAGACTGTGTAATTTTACATTATTTCTGCCTGTCTCCTG  350

seq1  GAATTCCCAGGGCTCTGAGATTGACATTGCAATCACTGAACTTTGACGGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCAGGGCTCTGAGATTGACATTGCAATCACTGAACTTTGACGGC  400

seq1  ACCAGGTTGTTCTCCATAATGTGGGTCAGCCTTATGCAACCAGCTGAAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGGTTGTTCTCCATAATGTGGGTCAGCCTTATGCAACCAGCTGAAGG  450

seq1  CCTTAACTAAGCCCGGAGATTGGCATCTCTAAGGAGGAGAGAAGTCTCCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTAACTAAGCCCGGAGATTGGCATCTCTAAGGAGGAGAGAAGTCTCCC  500

seq1  ACAGACCTTGTCAATGTCATTGAGTCCCTGAATCTCAGATTTTCCCAGCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGACCTTGTCAATGTCATTGAGTCCCTGAATCTCAGATTTTCCCAGCC  550

seq1  AGCACTGTCACACGAGCCACTTAAGTCCTCTATGGTGAATTAGTTAATGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACTGTCACACGAGCCACTTAAGTCCTCTATGGTGAATTAGTTAATGA  600

seq1  AATGCTGTGCTGTTGGCTGTGTTTCTCTGGAGAACTATGGCAAGAACTGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCTGTGCTGTTGGCTGTGTTTCTCTGGAGAACTATGGCAAGAACTGA  650

seq1  CCAGCATCTGAAACAGCTGCACAAACATGTGCCCAGGAACTGGTCCATCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCATCTGAAACAGCTGCACAAACATGTGCCCAGGAACTGGTCCATCT  700

seq1  AGCCCAAACCAGCCTGCTCTCCACCCCACCTCTGCAGCTAACATATGCCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCAAACCAGCCTGCTCTCCACCCCACCTCTGCAGCTAACATATGCCT  750

seq1  TTCCGCACTCCTTGTGAGTTCTGTACTAGCTCGCTGCGCCAGTGGCCTTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCGCACTCCTTGTGAGTTCTGTACTAGCTCGCTGCGCCAGTGGCCTTC  800

seq1  CTCTGATCCCCAAAACCCTCCTTCCCATGCCTGTCCATCTCTTCCCACAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGATCCCCAAAACCCTCCTTCCCATGCCTGTCCATCTCTTCCCACAA  850

seq1  CCATGCATGGTTTTGTTCCTTTAATAACTCTCAAGCTCTATAAAACTCAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGCATGGTTTTGTTCCTTTAATAACTCTCAAGCTCTATAAAACTCAC  900

seq1  AATAGTCCTGCTTTCTTTCCTGTACCGTGACTGATACAGCACCACACGTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGTCCTGCTTTCTTTCCTGTACCGTGACTGATACAGCACCACACGTG  950

seq1  TGTGTGCGCACATGTGCACACACACACACACACACACACACACACACACA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGCGCACATGTGCACACACACACACACACACACACACACACACACA  1000

seq1  CAAAATGTGCCTATAGAATAAAGACCAATATTGTCAAACAGTTCTTGTTT  1050
      |  |||||||||||||||| ||||||||||||||| ||||||||||||||
seq2  C-TAATGTGCCTATAGAAT-AAGACCAATATTGTC-AACAGTTCTTGTTT  1047

seq1  CTTATCTCACTCGTCCATGTATTGTTCACTGAGGATCTATCCCCGAGTGC  1100
        |||||||||||| ||||||||| ||||||| ||||||| |||||||||
seq2  TCTATCTCACTCGT-CATGTATTG-TCACTGA-GATCTAT-CCCGAGTGC  1093

seq1  TGACTGTGCCCAGGTGCC-TAAGAGAACACCAGGAATTGTCACTGGGACC  1149
      |||||||  ||||||||| |||||||   ||||| || |||||||| |||
seq2  TGACTGT--CCAGGTGCCTTAAGAGATACCCAGG-ATGGTCACTGGTACC  1140

seq1  TAGAACCGTGGCCTTTGCC  1168
      || | |  || ||||||||
seq2  TAAATCGTTGACCTTTGCC  1159

seq1: chr16_89897634_89898269
seq2: B6Ng01-188G08.g_67_702 (reverse)

seq1  CACACCCCTTAATCTCCACCCCCTACCCACAGAACTGTAAGAGGGGCGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACCCCTTAATCTCCACCCCCTACCCACAGAACTGTAAGAGGGGCGCA  50

seq1  GCAGAAGCGATGCCAGCTGCAGCAGCTGCCAGACAAACCCGGGTACAGCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAAGCGATGCCAGCTGCAGCAGCTGCCAGACAAACCCGGGTACAGCC  100

seq1  CGATTTCAAAAAAAAAAAAAAAAAAGAGAGAGAGAGAGAAACCGATAAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGATTTCAAAAAAAAAAAAAAAAAAGAGAGAGAGAGAGAAACCGATAAGA  150

seq1  GCAAAATCATGCACTTTAAGAGGCGCGCACCACTTCCAAAATACTGAAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAATCATGCACTTTAAGAGGCGCGCACCACTTCCAAAATACTGAAAC  200

seq1  ATCTCTGAGGCTTTACCTGGGTGGTTTTTGCTCTTCTGCCTTGCATGCTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCTGAGGCTTTACCTGGGTGGTTTTTGCTCTTCTGCCTTGCATGCTC  250

seq1  TTGCTAAGGCTAATTTGTGGGTTGGTGGCACCCTCGGAAAGACAGTGCGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTAAGGCTAATTTGTGGGTTGGTGGCACCCTCGGAAAGACAGTGCGA  300

seq1  CTTCCTACAGGGAAGCGTGTTGTAATTACTGTACGGAGGAGTCTCTTCGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTACAGGGAAGCGTGTTGTAATTACTGTACGGAGGAGTCTCTTCGG  350

seq1  CAGCAGCCGGTGGCATCTTATGCTTTGCAAGATCGGGAATATCCGACACC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAGCCGGTGGCATCTTATGCTTTGCAAGATCGGGAATATCCGACACC  400

seq1  AAATTCCGGCAGTAGCTTGAGAATCTGTTCCTCGGTCCTCCATTAGCCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTCCGGCAGTAGCTTGAGAATCTGTTCCTCGGTCCTCCATTAGCCTT  450

seq1  CACCCCAGAGTTTTTCTGAGCATACAAGTCACCCAGGGAGTTGGCTCGCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCCAGAGTTTTTCTGAGCATACAAGTCACCCAGGGAGTTGGCTCGCT  500

seq1  GACAGGTGCTGAGCTGCCGGGGACTCGCCTCTGTTTCCATCCCCCGAGCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGGTGCTGAGCTGCCGGGGACTCGCCTCTGTTTCCATCCCCCGAGCC  550

seq1  TCCTCGCAATCCTTCTCTTCCGCGGAACCCAAGATTTCTTCGTTGCTTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCGCAATCCTTCTCTTCCGCGGAACCCAAGATTTCTTCGTTGCTTGT  600

seq1  TAAATGTTCTTGGCTCAGATCTGAGAGTGAGAATTC  636
      ||||||||||||||||||||||||||||||||||||
seq2  TAAATGTTCTTGGCTCAGATCTGAGAGTGAGAATTC  636