BAC Information

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BAC

Clone NameB6Ng01-190A04
Chromosome16 (Build37)
Map Location 55,012,094 - 55,114,248
singlet/doubletdoublet
Overlap geneLOC436421
Upstream geneLOC100043442, LOC100043449, LOC667927
Downstream geneZpld1, Nfkbiz, Gm1752, Lrriq2, EG667966, LOC629242, Rpl24, Zbtb11, Pcnp, Rg9mtd1, Senp7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-190A04.bB6Ng01-190A04.g
ACCGA013881GA013882
length1,1531,209
definitionB6Ng01-190A04.b B6Ng01-190A04.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(55,113,085 - 55,114,248)(55,012,094 - 55,013,296)
sequence
gaattcactaaaacactaaatgacattgcattagcttgatcagccctaca
gttcaaataaccatgtgataacttgtaattcccagttcatggactctgag
ggtaggacctcatagctattgtatgaactcacaagttatatagctaaaac
aaaactcataaaggcattaactcacacacactatgaacgttcagtattaa
tcaaccatagtgattgtagtacaggaagagtaaagtgttttgatgtgact
caggggcccaccatagttctagtaatattaacctgtatgtaagtatactt
ccactgagttgagtaaggcagggttggccagactgaaaagcatttcttaa
atttaagtaggaattttaaaatgtgcaacatcagccaagtgtagtgatgc
acatttttaatctcagcccttagaaaggagagacaggccagcttggtcta
cagcaagagctgcatagtgagaacttgaataacacaaaataataaaaaat
ataagtatgtaaattaataaacagatatcctttattgtattgaccatgtt
catatatatattgctacatatatgtgaaaattatatgaaaatttctttgc
cataaaataagtaacaggaaatactggtgtcaagagagacattattttga
gactggtatgttccctcaaagtgtcaagaacatagtttctttccttcttt
gccatacattggcagtcattgtcagatcagctctcacactagatattttt
taaattttattttaaagtcttttttattggatattttcttcatttacatt
tcaaatgttatcccctttccctctgtcctagaagcaccctatcacatcct
cccagccctgcttctataaaggtgttcctctaaccacccacccattccca
cctcccttccctccattccccgacagtggggaatctattgagccttcata
ggaccaaggacctctcctccattgatgcatgacaggctatatgcagctgg
agccatgtgtactctttctgatggctagtccctgggagttctgggggttc
tgttgattgatactgtttttcttcctattggggtgcaaaccttcaactct
tagtactttctcctactcctcttactgggaaccccaactcaatggatgtc
tgc

gaattcatacatcatgtgaaattctttcttttaaacattttgagaatttc
tcttttcatctaaaattagtagaagggaatggcaggtttctgtaaagaat
ttgctctgaaagctgaagcacagtcaagtccctaaattattcaaaatcct
cccgtctttactaatgacttttttatgtgaaggagcagaagcagcagttc
cttccagggaatctggttaaaatattttagctgaggccttgaaactaaaa
agttttaaaattctctgcatatcttcatgctcatctgaacaggagacttt
aaaatatgtgatctttatgtttctttacatgagaaatgaaagaagtgctt
tgaaatggaaattttttttctagcatgaacagcctcaatgattgtgtgac
taactgctccaaggcggagatttgacatttccccagtaatagttggagtc
attgaaaccttttgaactttcaaaagaaatagaatgatctggctaacaat
tacaaaatcagggtagtttctagtgaagttggcagaattcttgcaagccc
aactctatcggaatcctctttttgacagactgtatcacttaacagacaac
tttacttatatcctttctttgtaagctgtatgtgtctcaaaaatacactt
cgaccttaacttcagtttgggaaacatatttcaagctgtggtccattttc
ttactaaggagtctattgtagtggaagcttttgcatagctaatttccggc
tagtgcttcataaattacttaaactacccttttactaagaatgaaaagaa
agttatggccattaaagtttcttagagattatatgagtagtcttaggttt
tgtttcctggatcttcataggacatttagtgctttatttgctaagtatgt
gaaaacagaatcttgtccatatgtgataaatcttatgtaaatattactaa
ggattagcctcataaaatctattttgttaaatctttcctcatagcaagaa
tacaggtgagtagggtgaaatattgatcaaataatcagaaactgaatctt
tccctacttgccattgatttcaaataaataaaagccttaacattttaatt
gccttgtggtatttatcagaaaaatagccatagtttactatgaacttggc
tgttatggaacaggtcataatttatcagggacaggccatatgtgtttatt
cctccctac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_55113085_55114248
seq2: B6Ng01-190A04.b_48_1200 (reverse)

seq1  GCAGACAACCATTGGAGTGTGGGGTCCCCAGT-AGAGGAGTTAGAGAAAG  49
      ||||||| ||||| |||| |||||| |||||| ||||||||  |||||||
seq2  GCAGACATCCATT-GAGT-TGGGGTTCCCAGTAAGAGGAGTAGGAGAAAG  48

seq1  TACTAAAGGAGTTGAAAGGGTTTGCAACCCCATAGGAAGAAAAACAGTAT  99
      ||||||  ||||||||  |||||||| ||| |||||||||||||||||||
seq2  TACTAA--GAGTTGAA--GGTTTGCACCCCAATAGGAAGAAAAACAGTAT  94

seq1  CAATCAACCAGAACCCCCAGAACTCCCAGGGACTAAGCCATCAAGAAAGG  149
      ||||||| |||||||||||||||||||||||||| ||||||| ||||| |
seq2  CAATCAA-CAGAACCCCCAGAACTCCCAGGGACT-AGCCATC-AGAAA-G  140

seq1  AGTACACATGGCTCCAGCTGCATATAGCCTTGTCATGCATCAATGGGAGG  199
      ||||||||||||||||||||||||||||| |||||||||||||| |||||
seq2  AGTACACATGGCTCCAGCTGCATATAGCC-TGTCATGCATCAAT-GGAGG  188

seq1  AGAGGTCCTTGGTCCTATGAAGGCTCAATAGATTCCCCACTGTCGGGGAA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGTCCTTGGTCCTATGAAGGCTCAATAGATTCCCCACTGTCGGGGAA  238

seq1  TGGAGGGAAGGGAGGTGGGAATGGGTGGGTGGTTAGAGGAACACCTTTAT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGGGAAGGGAGGTGGGAATGGGTGGGTGGTTAGAGGAACACCTTTAT  288

seq1  AGAAGCAGGGCTGGGAGGATGTGATAGGGTGCTTCTAGGACAGAGGGAAA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGCAGGGCTGGGAGGATGTGATAGGGTGCTTCTAGGACAGAGGGAAA  338

seq1  GGGGATAACATTTGAAATGTAAATGAAGAAAATATCCAATAAAAAAGACT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGATAACATTTGAAATGTAAATGAAGAAAATATCCAATAAAAAAGACT  388

seq1  TTAAAATAAAATTTAAAAAATATCTAGTGTGAGAGCTGATCTGACAATGA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAATAAAATTTAAAAAATATCTAGTGTGAGAGCTGATCTGACAATGA  438

seq1  CTGCCAATGTATGGCAAAGAAGGAAAGAAACTATGTTCTTGACACTTTGA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCAATGTATGGCAAAGAAGGAAAGAAACTATGTTCTTGACACTTTGA  488

seq1  GGGAACATACCAGTCTCAAAATAATGTCTCTCTTGACACCAGTATTTCCT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAACATACCAGTCTCAAAATAATGTCTCTCTTGACACCAGTATTTCCT  538

seq1  GTTACTTATTTTATGGCAAAGAAATTTTCATATAATTTTCACATATATGT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACTTATTTTATGGCAAAGAAATTTTCATATAATTTTCACATATATGT  588

seq1  AGCAATATATATATGAACATGGTCAATACAATAAAGGATATCTGTTTATT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAATATATATATGAACATGGTCAATACAATAAAGGATATCTGTTTATT  638

seq1  AATTTACATACTTATATTTTTTATTATTTTGTGTTATTCAAGTTCTCACT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTACATACTTATATTTTTTATTATTTTGTGTTATTCAAGTTCTCACT  688

seq1  ATGCAGCTCTTGCTGTAGACCAAGCTGGCCTGTCTCTCCTTTCTAAGGGC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAGCTCTTGCTGTAGACCAAGCTGGCCTGTCTCTCCTTTCTAAGGGC  738

seq1  TGAGATTAAAAATGTGCATCACTACACTTGGCTGATGTTGCACATTTTAA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGATTAAAAATGTGCATCACTACACTTGGCTGATGTTGCACATTTTAA  788

seq1  AATTCCTACTTAAATTTAAGAAATGCTTTTCAGTCTGGCCAACCCTGCCT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCCTACTTAAATTTAAGAAATGCTTTTCAGTCTGGCCAACCCTGCCT  838

seq1  TACTCAACTCAGTGGAAGTATACTTACATACAGGTTAATATTACTAGAAC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCAACTCAGTGGAAGTATACTTACATACAGGTTAATATTACTAGAAC  888

seq1  TATGGTGGGCCCCTGAGTCACATCAAAACACTTTACTCTTCCTGTACTAC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGTGGGCCCCTGAGTCACATCAAAACACTTTACTCTTCCTGTACTAC  938

seq1  AATCACTATGGTTGATTAATACTGAACGTTCATAGTGTGTGTGAGTTAAT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCACTATGGTTGATTAATACTGAACGTTCATAGTGTGTGTGAGTTAAT  988

seq1  GCCTTTATGAGTTTTGTTTTAGCTATATAACTTGTGAGTTCATACAATAG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTTATGAGTTTTGTTTTAGCTATATAACTTGTGAGTTCATACAATAG  1038

seq1  CTATGAGGTCCTACCCTCAGAGTCCATGAACTGGGAATTACAAGTTATCA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGAGGTCCTACCCTCAGAGTCCATGAACTGGGAATTACAAGTTATCA  1088

seq1  CATGGTTATTTGAACTGTAGGGCTGATCAAGCTAATGCAATGTCATTTAG  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGTTATTTGAACTGTAGGGCTGATCAAGCTAATGCAATGTCATTTAG  1138

seq1  TGTTTTAGTGAATTC  1164
      |||||||||||||||
seq2  TGTTTTAGTGAATTC  1153


seq1: chr16_55012094_55013296
seq2: B6Ng01-190A04.g_63_1271

seq1  GAATTCATACATCATGTGAAATTCTTTCTTTTAAACATTTTGAGAATTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATACATCATGTGAAATTCTTTCTTTTAAACATTTTGAGAATTTC  50

seq1  TCTTTTCATCTAAAATTAGTAGAAGGGAATGGCAGGTTTCTGTAAAGAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTCATCTAAAATTAGTAGAAGGGAATGGCAGGTTTCTGTAAAGAAT  100

seq1  TTGCTCTGAAAGCTGAAGCACAGTCAAGTCCCTAAATTATTCAAAATCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTCTGAAAGCTGAAGCACAGTCAAGTCCCTAAATTATTCAAAATCCT  150

seq1  CCCGTCTTTACTAATGACTTTTTTATGTGAAGGAGCAGAAGCAGCAGTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGTCTTTACTAATGACTTTTTTATGTGAAGGAGCAGAAGCAGCAGTTC  200

seq1  CTTCCAGGGAATCTGGTTAAAATATTTTAGCTGAGGCCTTGAAACTAAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCAGGGAATCTGGTTAAAATATTTTAGCTGAGGCCTTGAAACTAAAA  250

seq1  AGTTTTAAAATTCTCTGCATATCTTCATGCTCATCTGAACAGGAGACTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTAAAATTCTCTGCATATCTTCATGCTCATCTGAACAGGAGACTTT  300

seq1  AAAATATGTGATCTTTATGTTTCTTTACATGAGAAATGAAAGAAGTGCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATATGTGATCTTTATGTTTCTTTACATGAGAAATGAAAGAAGTGCTT  350

seq1  TGAAATGGAAATTTTTTTTCTAGCATGAACAGCCTCAATGATTGTGTGAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATGGAAATTTTTTTTCTAGCATGAACAGCCTCAATGATTGTGTGAC  400

seq1  TAACTGCTCCAAGGCGGAGATTTGACATTTCCCCAGTAATAGTTGGAGTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTGCTCCAAGGCGGAGATTTGACATTTCCCCAGTAATAGTTGGAGTC  450

seq1  ATTGAAACCTTTTGAACTTTCAAAAGAAATAGAATGATCTGGCTAACAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAAACCTTTTGAACTTTCAAAAGAAATAGAATGATCTGGCTAACAAT  500

seq1  TACAAAATCAGGGTAGTTTCTAGTGAAGTTGGCAGAATTCTTGCAAGCCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAAATCAGGGTAGTTTCTAGTGAAGTTGGCAGAATTCTTGCAAGCCC  550

seq1  AACTCTATCGGAATCCTCTTTTTGACAGACTGTATCACTTAACAGACAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCTATCGGAATCCTCTTTTTGACAGACTGTATCACTTAACAGACAAC  600

seq1  TTTACTTATATCCTTTCTTTGTAAGCTGTATGTGTCTCAAAAATACACTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACTTATATCCTTTCTTTGTAAGCTGTATGTGTCTCAAAAATACACTT  650

seq1  CGACCTTAACTTCAGTTTGGGAAACATATTTCAAGCTGTGGTCCATTTTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGACCTTAACTTCAGTTTGGGAAACATATTTCAAGCTGTGGTCCATTTTC  700

seq1  TTACTAAGGAGTCTATTGTAGTGGAAGCTTTTGCATAGCTAATTTCCGGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTAAGGAGTCTATTGTAGTGGAAGCTTTTGCATAGCTAATTTCCGGC  750

seq1  TAGTGCTTCATAAATTACTTAAACTACCCTTTTACTAAGAATGAAAAGAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGCTTCATAAATTACTTAAACTACCCTTTTACTAAGAATGAAAAGAA  800

seq1  AGTTATGGCCATTAAAGTTTCTTAGAGATTATATGAGTAGTCTTAGGTTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTATGGCCATTAAAGTTTCTTAGAGATTATATGAGTAGTCTTAGGTTT  850

seq1  TGTTTCCTGGATCTTCATAGGACATTTAGTGCTTTATTTGCTAAGTATGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTCCTGGATCTTCATAGGACATTTAGTGCTTTATTTGCTAAGTATGT  900

seq1  GAAAACAGAATCTTGTCCATATGTGATAAATCTTATGTAAATATTACTAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAACAGAATCTTGTCCATATGTGATAAATCTTATGTAAATATTACTAA  950

seq1  GGATTAGCCTCATAAAATCTATTTTGTTAAATCTTTCCTCATAGCAAGAA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTAGCCTCATAAAATCTATTTTGTTAAATCTTTCCTCATAGCAAGAA  1000

seq1  TACAGGTGAGTAGGGTGAAATATTGATCAAATAATCAAGAAAACTGAATC  1050
      |||||||||||||||||||||||||||||||||||||   ||||||||| 
seq2  TACAGGTGAGTAGGGTGAAATATTGATCAAATAATCA--GAAACTGAAT-  1047

seq1  CTTTCCCTACCTTGCCATTGATTTCAAATAAATAAAAGCTTTAACATTTT  1100
      ||||||||| ||||||||||||||||||||||||||||| ||||||||||
seq2  CTTTCCCTA-CTTGCCATTGATTTCAAATAAATAAAAGCCTTAACATTTT  1096

seq1  TATTTGCTTGTGGTTATTATCAG-AAATTAGGCATAG-TTACTATGACCT  1148
       |||  ||||||||  ||||||| ||| ||| ||||| ||||||||| | 
seq2  AATTGCCTTGTGGTATTTATCAGAAAAATAGCCATAGTTTACTATGAAC-  1145

seq1  TTTGCCCTGTATGGAACCAAGTCATATTTT-------ACAGGACAGCTAT  1191
       ||| |   ||||||| || |||||| |||       ||||| ||  | |
seq2  -TTGGCTGTTATGGAA-CAGGTCATAATTTATCAGGGACAGGCCATATGT  1193

seq1  GTTTA----TCCCTAC  1203
      |||||    |||||||
seq2  GTTTATTCCTCCCTAC  1209


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