BAC Information

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BAC

Clone NameB6Ng01-190F06
Chromosome16 (Build37)
Map Location 65,323,595 - 65,461,048
singlet/doubletdoublet
Overlap genenone
Upstream geneCkt2, 4930453N24Rik, Zfp654, LOC433036, Cggbp1, LOC668242, LOC100043815, LOC677448, Htr1f, LOC668247, LOC672931
Downstream genePou1f1, Chmp2b, EG383186, Vgll3, LOC664846, LOC100039035
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-190F06.bB6Ng01-190F06.g
ACCGA014110GA014111
length9631,163
definitionB6Ng01-190F06.b B6Ng01-190F06.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(65,460,087 - 65,461,048)(65,323,595 - 65,324,762)
sequence
gaattcatccaaaggttgcccactcatatttgtgcctcccaggtcttcct
agaaaaccacagccctgtcaactcaaactttcctggccaatcaccaccgt
gatttcctcagatgattttgaggtttgagataattaaaatttttcagtaa
aatattttattgttaaaaattgcatcactgaacattttaaattcaaaatg
tgaaacggtaaatttagtcttttaaaattgacccttaagcgacttttttt
ttcctgcctctttctaggactttagtaaacactgtgatttaattcattta
atttccactacctaaaagtttactaaaagttaaatttcaaaataaaagaa
acacacaccctaagatgtagagattaggagaaagtagctaatttacgtac
ggcacgaatcttttctaaaactatatgataactaatctattagatgttac
cagttgcagatagatgtaaagcagttttccttgaaatcaagatccatctt
gatgtaaaacatcactctcaacatgctatttcatcatacaacgtataatg
agcccgtttttcttccacacacaagctgcttgcagcttacaactcaagga
ccaggtcaagaaggcagggaaagtgagaatttctttccctgctaacaaca
tggccttcaccccaatgacgtgtgtgttaaacttctgacacagagacatg
catttgctctcactctcaagaggagcaaaattttaatgaaaagaaaattc
ttaaatgttaagaccatgtcttaacatttaagtaaaaagtcaaatacatt
tttaaaaaatcattttttttttctgaaacataggctttctggtgaggttt
cattcattatgctctcctgatttttactcattattactatatataacttc
tattattatataacatttaatatgaataatatatatatatgtgtgtgtgt
gtgtgtgtgtgcg

gaattcaaaacttctacagctctccaacaatttcattccaggtaaatctc
tttatggacttttcaaacacaagattttcagtgagtttgctttcttcatt
tgtggagagtgaggatgagtttgaagaactgtttgcacaaattgaagcat
ggttcccttgagctccaccatgtagcagtgtattgttctgtatcgcatgt
attttactgtacctgtattgctttcagtcttttcaaattacttattttat
gtgtttgagtgttttacctgcatgcatgtctgtgtatcatgtgtacacag
tgcctgcaaaggccagaaggagattggatctgctagagatgtaggtgcag
gtaattgagaacatctacaagggtgctaagaattgatcctctggaagagc
cggcaatgctcttaactgcttagccatctcgccagcccctgcttgcagtc
cttttgggagctttataaagaagtaaagctcacacttatcaccatgctat
ctgacaatggaacagaactcagggacaacagaacaatcctctttttctga
cctcctcaaaatgctgtaataggttccctccaagaaggaaaataataata
cagactgaaatgtatacaatgcttatatacttcattctaagttctcttca
gagcccttatgtatgagtgtactcatccactctcacagatatatgatggt
taactttaatcgtcaccttaacacaagctaggaagagggtcgcaatgggg
gtcatctatactgggttggtctatgggaatgttttgggagactgttttaa
ttaggttgattgatatgagaaaactaagcttacagacagtgatgccattg
ccaagataggtggtcctgagctgtttaggaggaaagaaaggaagctgagc
atagcaagaatgaatgcgagtatgtaatgggttcatttcttttctggtct
tgatgtcaagatgatgtgaccagcagtttgaagtttctgtttggactcct
caaaaatatgtaccataactggaaaccgtaagttgaaataccagttgtat
gcttataagttgctttattatcttctactggccaactgactgtcctgaaa
tggagggaattgcattattagtatgctaggctactcattagcctagaatt
caatgaaataaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_65460087_65461048
seq2: B6Ng01-190F06.b_48_1010 (reverse)

seq1  CACACACACACACACACACACACATATATATATATTATTCATATTAAATG  50
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCACACACACACACACACACACATATATATATATTATTCATATTAAATG  50

seq1  TTATATAATAATAGAAGTTATATATAGTAATAATGAGTAAAAATCAGGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATATAATAATAGAAGTTATATATAGTAATAATGAGTAAAAATCAGGAG  100

seq1  AGCATAATGAATGAAACCTCACCAGAAAGCCTATGTTTCAG-AAAAAAAA  149
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  AGCATAATGAATGAAACCTCACCAGAAAGCCTATGTTTCAGAAAAAAAAA  150

seq1  ATGATTTTTTAAAAATGTATTTGACTTTTTACTTAAATGTTAAGACATGG  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATTTTTTAAAAATGTATTTGACTTTTTACTTAAATGTTAAGACATGG  200

seq1  TCTTAACATTTAAGAATTTTCTTTTCATTAAAATTTTGCTCCTCTTGAGA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAACATTTAAGAATTTTCTTTTCATTAAAATTTTGCTCCTCTTGAGA  250

seq1  GTGAGAGCAAATGCATGTCTCTGTGTCAGAAGTTTAACACACACGTCATT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGAGCAAATGCATGTCTCTGTGTCAGAAGTTTAACACACACGTCATT  300

seq1  GGGGTGAAGGCCATGTTGTTAGCAGGGAAAGAAATTCTCACTTTCCCTGC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTGAAGGCCATGTTGTTAGCAGGGAAAGAAATTCTCACTTTCCCTGC  350

seq1  CTTCTTGACCTGGTCCTTGAGTTGTAAGCTGCAAGCAGCTTGTGTGTGGA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTGACCTGGTCCTTGAGTTGTAAGCTGCAAGCAGCTTGTGTGTGGA  400

seq1  AGAAAAACGGGCTCATTATACGTTGTATGATGAAATAGCATGTTGAGAGT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAACGGGCTCATTATACGTTGTATGATGAAATAGCATGTTGAGAGT  450

seq1  GATGTTTTACATCAAGATGGATCTTGATTTCAAGGAAAACTGCTTTACAT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTTTTACATCAAGATGGATCTTGATTTCAAGGAAAACTGCTTTACAT  500

seq1  CTATCTGCAACTGGTAACATCTAATAGATTAGTTATCATATAGTTTTAGA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCTGCAACTGGTAACATCTAATAGATTAGTTATCATATAGTTTTAGA  550

seq1  AAAGATTCGTGCCGTACGTAAATTAGCTACTTTCTCCTAATCTCTACATC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGATTCGTGCCGTACGTAAATTAGCTACTTTCTCCTAATCTCTACATC  600

seq1  TTAGGGTGTGTGTTTCTTTTATTTTGAAATTTAACTTTTAGTAAACTTTT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGGTGTGTGTTTCTTTTATTTTGAAATTTAACTTTTAGTAAACTTTT  650

seq1  AGGTAGTGGAAATTAAATGAATTAAATCACAGTGTTTACTAAAGTCCTAG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTAGTGGAAATTAAATGAATTAAATCACAGTGTTTACTAAAGTCCTAG  700

seq1  AAAGAGGCAGGAAAAAAAAAGTCGCTTAAGGGTCAATTTTAAAAGACTAA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGGCAGGAAAAAAAAAGTCGCTTAAGGGTCAATTTTAAAAGACTAA  750

seq1  ATTTACCGTTTCACATTTTGAATTTAAAATGTTCAGTGATGCAATTTTTA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTACCGTTTCACATTTTGAATTTAAAATGTTCAGTGATGCAATTTTTA  800

seq1  ACAATAAAATATTTTACTGAAAAATTTTAATTATCTCAAACCTCAAAATC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATAAAATATTTTACTGAAAAATTTTAATTATCTCAAACCTCAAAATC  850

seq1  ATCTGAGGAAATCACGGTGGTGATTGGCCAGGAAAGTTTGAGTTGACAGG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGAGGAAATCACGGTGGTGATTGGCCAGGAAAGTTTGAGTTGACAGG  900

seq1  GCTGTGGTTTTCTAGGAAGACCTGGGAGGCACAAATATGAGTGGGCAACC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTGGTTTTCTAGGAAGACCTGGGAGGCACAAATATGAGTGGGCAACC  950

seq1  TTTGGATGAATTC  962
      |||||||||||||
seq2  TTTGGATGAATTC  963


seq1: chr16_65323595_65324762
seq2: B6Ng01-190F06.g_65_1227

seq1  GAATTCAAAACTTCTACAGCTCTCCAACAATTTCATTCCAGGTAAATCTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAACTTCTACAGCTCTCCAACAATTTCATTCCAGGTAAATCTC  50

seq1  TTTATGGACTTTTCAAACACAAGATTTTCAGTGAGTTTGCTTTCTTCATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATGGACTTTTCAAACACAAGATTTTCAGTGAGTTTGCTTTCTTCATT  100

seq1  TGTGGAGAGTGAGGATGAGTTTGAAGAACTGTTTGCACAAATTGAAGCAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGAGAGTGAGGATGAGTTTGAAGAACTGTTTGCACAAATTGAAGCAT  150

seq1  GGTTCCCTTGAGCTCCACCATGTAGCAGTGTATTGTTCTGTATCGCATGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCCCTTGAGCTCCACCATGTAGCAGTGTATTGTTCTGTATCGCATGT  200

seq1  ATTTTACTGTACCTGTATTGCTTTCAGTCTTTTCAAATTACTTATTTTAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTACTGTACCTGTATTGCTTTCAGTCTTTTCAAATTACTTATTTTAT  250

seq1  GTGTTTGAGTGTTTTACCTGCATGCATGTCTGTGTATCATGTGTACACAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTTGAGTGTTTTACCTGCATGCATGTCTGTGTATCATGTGTACACAG  300

seq1  TGCCTGCAAAGGCCAGAAGGAGATTGGATCTGCTAGAGATGTAGGTGCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTGCAAAGGCCAGAAGGAGATTGGATCTGCTAGAGATGTAGGTGCAG  350

seq1  GTAATTGAGAACATCTACAAGGGTGCTAAGAATTGATCCTCTGGAAGAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATTGAGAACATCTACAAGGGTGCTAAGAATTGATCCTCTGGAAGAGC  400

seq1  CGGCAATGCTCTTAACTGCTTAGCCATCTCGCCAGCCCCTGCTTGCAGTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGCAATGCTCTTAACTGCTTAGCCATCTCGCCAGCCCCTGCTTGCAGTC  450

seq1  CTTTTGGGAGCTTTATAAAGAAGTAAAGCTCACACTTATCACCATGCTAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTGGGAGCTTTATAAAGAAGTAAAGCTCACACTTATCACCATGCTAT  500

seq1  CTGACAATGGAACAGAACTCAGGGACAACAGAACAATCCTCTTTTTCTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACAATGGAACAGAACTCAGGGACAACAGAACAATCCTCTTTTTCTGA  550

seq1  CCTCCTCAAAATGCTGTAATAGGTTCCCTCCAAGAAGGAAAATAATAATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCTCAAAATGCTGTAATAGGTTCCCTCCAAGAAGGAAAATAATAATA  600

seq1  CAGACTGAAATGTATACAATGCTTATATACTTCATTCTAAGTTCTCTTCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACTGAAATGTATACAATGCTTATATACTTCATTCTAAGTTCTCTTCA  650

seq1  GAGCCCTTATGTATGAGTGTACTCATCCACTCTCACAGATATATGATGGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCCTTATGTATGAGTGTACTCATCCACTCTCACAGATATATGATGGT  700

seq1  TAACTTTAATCGTCACCTTAACACAAGCTAGGAAGAGGGTCGCAATGGGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTTTAATCGTCACCTTAACACAAGCTAGGAAGAGGGTCGCAATGGGG  750

seq1  GTCATCTATACTGGGTTGGTCTATGGGAATGTTTTGGGAGACTGTTTTAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATCTATACTGGGTTGGTCTATGGGAATGTTTTGGGAGACTGTTTTAA  800

seq1  TTAGGTTGATTGATATGAGAAAACTAAGCTTACAGACAGTGATGCCATTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGTTGATTGATATGAGAAAACTAAGCTTACAGACAGTGATGCCATTG  850

seq1  CCAAGATAGGTGGTCCTGAGCTGTTTAGGAGGAAAGAAAGGAAGCTGAGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGATAGGTGGTCCTGAGCTGTTTAGGAGGAAAGAAAGGAAGCTGAGC  900

seq1  ATAGCAGGAATGAATGCGAGTATGT-ATGGGTTCATTTC-TTTCTGTTCT  948
      |||||| |||||||||||||||||| ||||||||||||| |||||| |||
seq2  ATAGCAAGAATGAATGCGAGTATGTAATGGGTTCATTTCTTTTCTGGTCT  950

seq1  TGATGTCAAGATGATGTGACCAGCAGTTTGAAGTTCCTGTTT-GACTCCT  997
      ||||||||||||||||||||||||||||||||||| |||||| |||||||
seq2  TGATGTCAAGATGATGTGACCAGCAGTTTGAAGTTTCTGTTTGGACTCCT  1000

seq1  CAAAAATAATGTACCATAACCTGGAACCGTAAGTTGAAATAACCCAGTTT  1047
      ||||||| ||||||||||||  | |||||||||||||||||  |||| ||
seq2  CAAAAAT-ATGTACCATAACTGGAAACCGTAAGTTGAAATA--CCAG-TT  1046

seq1  GTTATTGTTTAT-AGTTGCTTTATTATCTTCTACTGG-CAACTGACTGTT  1095
      ||   || |||| |||||||||||||||||||||||| |||||||||| |
seq2  GT--ATGCTTATAAGTTGCTTTATTATCTTCTACTGGCCAACTGACTG-T  1093

seq1  CCTGATAT-GAGG--ATTGAAATTTATAAATATGCTAGG-TACTCCCAAA  1141
      ||||| || ||||  |||| |  |||| | ||||||||| |||||    |
seq2  CCTGAAATGGAGGGAATTGCA--TTATTAGTATGCTAGGCTACTC----A  1137

seq1  TTAGCCTAGAAATTCAATGAAATAAAA  1168
      ||||||||| |||||||||||||||||
seq2  TTAGCCTAG-AATTCAATGAAATAAAA  1163


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