BAC Information

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BAC

Clone NameB6Ng01-192L04
Chromosome16 (Build37)
Map Location 25,482,657 - 25,530,773
singlet/doubletdoublet
Overlap genenone
Upstream geneLpp, A730098P11Rik, 5430420C16Rik
Downstream geneTrp63, LOC100043571, Leprel1, Cldn1, Cldn16, LOC100043057
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-192L04.bB6Ng01-192L04.g
ACCGA015868GA015869
length1,1141,069
definitionB6Ng01-192L04.b B6Ng01-192L04.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(25,529,672 - 25,530,773)(25,482,657 - 25,483,726)
sequence
gaattccacagctaccttagatgttgtaggtaggtttccttctttgattt
catctaagcaactgctatctatagcatggctacacttgactaactttcat
agtaaaactggttcatggcaatgtgaaaattccatacctaggtggagttt
tagaaaaaaaaatgcaattcagagaaagaaagcagtttctaccaaagtag
aaatttcagctagccactgaaccattataaagtctctttattctgatatt
tagcatgcctcatgtcaactgttactcgaagtacaattattgacttggtg
aaggattcagcaggcatagatacctatgtttgagtagtatcaaccttaga
atgataaaggatgattggttctctccaaacctaaacccagcccttgcgtg
aataagagaaagtaatatcaaataaagtaatacacagaggatttgtctat
ctgtcacccaagcagacattctgtctagaggacatagcctttcaaacttg
cctgtttgtgacaccacacacaatctaaaatcaacttaaaagtttcagtc
tatgactagattgaattgagcccatgcagtctagtggtgtgtcaaagctc
tttgccatgtatgagttttcaggacagtccccatgggctttctgacctgg
ccttgccagggaagattcttcttgcaaaagaatgaatgtgttccatgcat
tcctaataatcattgaacccccacagcacaagaaactggattcccagtcc
aaatacccaggcttttggatacaaagtgagcacagtgtgcccagccagcc
ctcagagcagggacagcgtgtgcctcaggccaaagcctggccctctgtcc
cagcagctgcactctgaggatgagaaacagggacatggccacctggtgct
tacccacccctttccacctgacaggaagatggtttaaacttttcccttgc
acaatgtgctggaggtggaaggaggggaaggagacaaaaagaattggggc
agggttgatttcatcagccccttcgccagtagcaccccagttattttctt
tgaggaaagaatgttttggcagcttaagccagcatgctcagacagaattt
cacttaacagacat
gaattccttccttggcccctacacaatgaaggtggatctgagttcactct
tttgacttgaaaaaaagaaagacagttatatgaagaaagcataagggaca
tgggaggtttggttttttttattcctgctcgtctacagtgtctgaagtct
gatgttttaggaggaaggggatggtctctgagcctatagagggatcaata
tgtcagcatgcctccgaaccctctgaccagggtttcctcagaacagatga
ggatgaggagggcaagtatagatgggaagctgtgcctggaggagctgttc
taacaaagaagctttgacccacaccttggtgatctccaaccctccacact
cacgttctccctccctaggtttccttcctaaacccaagaacctctcacct
gagaacatcaaggttccattgctaacttcagagagaccgagctaggattt
cccaagcattccagattgaagctcatgtccctagacaaactggtttttat
tgcagttaattctgccctttttggctacagaatttatcagcatgttagca
ttaacaggctttgtgtggtataaacctaagttgtacccaacatatataca
tcatgatttttaaccttctgctactacagggtacgatttcagttctaacc
ttcactgtctgtggggtagggtgtggctggagagtagctccttcaaaagt
gccctttagagtcttgagtaaaagatacaaaaaagctgcagactgtggct
tattgcttactatctctacagtcttgggagatgactttagtctacttgcc
actccattttctcagtaataaggtatactgggggcctttctattagcaga
cagtggcaaaggacagcatgtcacacatacacaacatgaagacacagcca
tgcatccccacccagaacttgtcctaatccaacttatctctgttacaaca
ttgtataaagtggccccattctgcatccttacaccattttccctataatc
gttgcataagcagagccatcttatttgccttcagagaacacatgcatttg
taataaacatgtatggcat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_25529672_25530773
seq2: B6Ng01-192L04.b_42_1155 (reverse)

seq1  ATGTCCTGTTAAGTGGAA-TCTGTCTGAGCATGCTGGGCTTAAGCTGCC-  48
      |||| |||||||||| || |||||||||||||||| ||||||||||||| 
seq2  ATGT-CTGTTAAGTGAAATTCTGTCTGAGCATGCT-GGCTTAAGCTGCCA  48

seq1  AAACA-TCTTTTCTCAAAGAAA--TACTGGGGTGCTACT-GCGA--GGGC  92
      ||||| ||||| ||||||||||   |||||||||||||| ||||  ||||
seq2  AAACATTCTTTCCTCAAAGAAAATAACTGGGGTGCTACTGGCGAAGGGGC  98

seq1  TGATGAAATCAA-CCTG-CCCAATTCTTTTTGTCTCCTTCCC--TCTTCC  138
      |||||||||||| |||| ||||||||||||||||||||||||   |||||
seq2  TGATGAAATCAACCCTGCCCCAATTCTTTTTGTCTCCTTCCCCTCCTTCC  148

seq1  ACCTCCAGCACATTGTGCAAGGG-AAAGTTTAAACCATCTTCCTGTCAGG  187
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  ACCTCCAGCACATTGTGCAAGGGAAAAGTTTAAACCATCTTCCTGTCAGG  198

seq1  TGG-AAGGGGTGGGTAAGCACCAGGTGGCCATGTCCCTGTTTCTCATCCT  236
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAAGGGGTGGGTAAGCACCAGGTGGCCATGTCCCTGTTTCTCATCCT  248

seq1  CAGAGTGCAGCTGCTGGGACAGAGGGCCAGGCTTTGGCCTGAGGCACACG  286
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGTGCAGCTGCTGGGACAGAGGGCCAGGCTTTGGCCTGAGGCACACG  298

seq1  CTGTCCCTGCTCTGAGGGCTGGCTGGGCACACTGTGCTCACTTTGTATCC  336
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCCCTGCTCTGAGGGCTGGCTGGGCACACTGTGCTCACTTTGTATCC  348

seq1  AAAAGCCTGGGTATTTGGACTGGGAATCCAGTTTCTTGTGCTGTGGGGGT  386
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGCCTGGGTATTTGGACTGGGAATCCAGTTTCTTGTGCTGTGGGGGT  398

seq1  TCAATGATTATTAGGAATGCATGGAACACATTCATTCTTTTGCAAGAAGA  436
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATGATTATTAGGAATGCATGGAACACATTCATTCTTTTGCAAGAAGA  448

seq1  ATCTTCCCTGGCAAGGCCAGGTCAGAAAGCCCATGGGGACTGTCCTGAAA  486
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTCCCTGGCAAGGCCAGGTCAGAAAGCCCATGGGGACTGTCCTGAAA  498

seq1  ACTCATACATGGCAAAGAGCTTTGACACACCACTAGACTGCATGGGCTCA  536
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCATACATGGCAAAGAGCTTTGACACACCACTAGACTGCATGGGCTCA  548

seq1  ATTCAATCTAGTCATAGACTGAAACTTTTAAGTTGATTTTAGATTGTGTG  586
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAATCTAGTCATAGACTGAAACTTTTAAGTTGATTTTAGATTGTGTG  598

seq1  TGGTGTCACAAACAGGCAAGTTTGAAAGGCTATGTCCTCTAGACAGAATG  636
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGTCACAAACAGGCAAGTTTGAAAGGCTATGTCCTCTAGACAGAATG  648

seq1  TCTGCTTGGGTGACAGATAGACAAATCCTCTGTGTATTACTTTATTTGAT  686
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCTTGGGTGACAGATAGACAAATCCTCTGTGTATTACTTTATTTGAT  698

seq1  ATTACTTTCTCTTATTCACGCAAGGGCTGGGTTTAGGTTTGGAGAGAACC  736
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACTTTCTCTTATTCACGCAAGGGCTGGGTTTAGGTTTGGAGAGAACC  748

seq1  AATCATCCTTTATCATTCTAAGGTTGATACTACTCAAACATAGGTATCTA  786
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCATCCTTTATCATTCTAAGGTTGATACTACTCAAACATAGGTATCTA  798

seq1  TGCCTGCTGAATCCTTCACCAAGTCAATAATTGTACTTCGAGTAACAGTT  836
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTGCTGAATCCTTCACCAAGTCAATAATTGTACTTCGAGTAACAGTT  848

seq1  GACATGAGGCATGCTAAATATCAGAATAAAGAGACTTTATAATGGTTCAG  886
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATGAGGCATGCTAAATATCAGAATAAAGAGACTTTATAATGGTTCAG  898

seq1  TGGCTAGCTGAAATTTCTACTTTGGTAGAAACTGCTTTCTTTCTCTGAAT  936
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTAGCTGAAATTTCTACTTTGGTAGAAACTGCTTTCTTTCTCTGAAT  948

seq1  TGCATTTTTTTTTCTAAAACTCCACCTAGGTATGGAATTTTCACATTGCC  986
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATTTTTTTTTCTAAAACTCCACCTAGGTATGGAATTTTCACATTGCC  998

seq1  ATGAACCAGTTTTACTATGAAAGTTAGTCAAGTGTAGCCATGCTATAGAT  1036
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAACCAGTTTTACTATGAAAGTTAGTCAAGTGTAGCCATGCTATAGAT  1048

seq1  AGCAGTTGCTTAGATGAAATCAAAGAAGGAAACCTACCTACAACATCTAA  1086
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGTTGCTTAGATGAAATCAAAGAAGGAAACCTACCTACAACATCTAA  1098

seq1  GGTAGCTGTGGAATTC  1102
      ||||||||||||||||
seq2  GGTAGCTGTGGAATTC  1114

seq1: chr16_25482657_25483726
seq2: B6Ng01-192L04.g_62_1130

seq1  GAATTCCTTCCTTGGCCCCTACACAATGAAGGTGGATCTGAGTTCACTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTCCTTGGCCCCTACACAATGAAGGTGGATCTGAGTTCACTCT  50

seq1  TTTGACTTGAAAAAAAGAAAGACAGTTATATGAAGAAAGCATAAGGGACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGACTTGAAAAAAAGAAAGACAGTTATATGAAGAAAGCATAAGGGACA  100

seq1  TGGGAGGTTTGGTTTTTTTTATTCCTGCTCGTCTACAGTGTCTGAAGTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAGGTTTGGTTTTTTTTATTCCTGCTCGTCTACAGTGTCTGAAGTCT  150

seq1  GATGTTTTAGGAGGAAGGGGATGGTCTCTGAGCCTATAGAGGGATCAATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTTTTAGGAGGAAGGGGATGGTCTCTGAGCCTATAGAGGGATCAATA  200

seq1  TGTCAGCATGCCTCCGAACCCTCTGACCAGGGTTTCCTCAGAACAGATGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAGCATGCCTCCGAACCCTCTGACCAGGGTTTCCTCAGAACAGATGA  250

seq1  GGATGAGGAGGGCAAGTATAGATGGGAAGCTGTGCCTGGAGGAGCTGTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGAGGAGGGCAAGTATAGATGGGAAGCTGTGCCTGGAGGAGCTGTTC  300

seq1  TAACAAAGAAGCTTTGACCCACACCTTGGTGATCTCCAACCCTCCACACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAAAGAAGCTTTGACCCACACCTTGGTGATCTCCAACCCTCCACACT  350

seq1  CACGTTCTCCCTCCCTAGGTTTCCTTCCTAAACCCAAGAACCTCTCACCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGTTCTCCCTCCCTAGGTTTCCTTCCTAAACCCAAGAACCTCTCACCT  400

seq1  GAGAACATCAAGGTTCCATTGCTAACTTCAGAGAGACCGAGCTAGGATTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAACATCAAGGTTCCATTGCTAACTTCAGAGAGACCGAGCTAGGATTT  450

seq1  CCCAAGCATTCCAGATTGAAGCTCATGTCCCTAGACAAACTGGTTTTTAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAGCATTCCAGATTGAAGCTCATGTCCCTAGACAAACTGGTTTTTAT  500

seq1  TGCAGTTAATTCTGCCCTTTTTGGCTACAGAATTTATCAGCATGTTAGCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGTTAATTCTGCCCTTTTTGGCTACAGAATTTATCAGCATGTTAGCA  550

seq1  TTAACAGGCTTTGTGTGGTATAAACCTAAGTTGTACCCAACATATATACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACAGGCTTTGTGTGGTATAAACCTAAGTTGTACCCAACATATATACA  600

seq1  TCATGATTTTTAACCTTCTGCTACTACAGGGTACGATTTCAGTTCTAACC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGATTTTTAACCTTCTGCTACTACAGGGTACGATTTCAGTTCTAACC  650

seq1  TTCACTGTCTGTGGGGTAGGGTGTGGCTGGAGAGTAGCTCCTTCAAAAGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACTGTCTGTGGGGTAGGGTGTGGCTGGAGAGTAGCTCCTTCAAAAGT  700

seq1  GCCCTTTAGAGTCTTGAGTAAAAGATACAAAAAAGCTGCAGACTGTGGCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTTTAGAGTCTTGAGTAAAAGATACAAAAAAGCTGCAGACTGTGGCT  750

seq1  TATTGCTTACTATCTCTACAGTCTTGGGAGATGACTTTAGTCTACTTGCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGCTTACTATCTCTACAGTCTTGGGAGATGACTTTAGTCTACTTGCC  800

seq1  ACTCCATTTTCTCAGTAATAAGGTATACTGGGGGCCTTTCTATTAGCAGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCATTTTCTCAGTAATAAGGTATACTGGGGGCCTTTCTATTAGCAGA  850

seq1  CAGTGGC-AAGGACAAGCATGTCACACATACACAACATGAAGACACAG-C  898
      ||||||| |||||| ||||||||||||||||||||||||||||||||| |
seq2  CAGTGGCAAAGGAC-AGCATGTCACACATACACAACATGAAGACACAGCC  899

seq1  ATGCATCCCCACCCAGAACTTGTCCTAATCCAACTTATCTCTGTTACAAC  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCATCCCCACCCAGAACTTGTCCTAATCCAACTTATCTCTGTTACAAC  949

seq1  ATTGTATAAAGTGGCCCCATTCTTGCAATCCTTACA-CATTTT-CCTATA  996
      |||||||||||||||||||||| ||| ||||||||| |||||| ||||||
seq2  ATTGTATAAAGTGGCCCCATTC-TGC-ATCCTTACACCATTTTCCCTATA  997

seq1  ATCGTTGCATAAGCAGGAGCCATCTTATTTGCCTTCAGAG-ACACATGCA  1045
      ||||||||||||||| |||||||||||||||||||||||| |||||||||
seq2  ATCGTTGCATAAGCA-GAGCCATCTTATTTGCCTTCAGAGAACACATGCA  1046

seq1  TTTGTAAAATAAACATGTATTGCAT  1070
      |||||  ||||||||||||| ||||
seq2  TTTGT--AATAAACATGTATGGCAT  1069