BAC Information

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BAC

Clone NameB6Ng01-193J02
Chromosome16 (Build37)
Map Location 38,196,250 - 38,372,797
singlet/doubletdoublet
Overlap geneGsk3b, Nr1i2, 4932425I24Rik, Cox17, LOC100043715, Popdc2
Upstream geneStxbp5l, Gtf2e1, Rabl3, Hgd, Ndufb4, LOC100043709, Fstl1, LOC100043264, Lrrc58, Gpr156, LOC100043271, LOC100043713
Downstream genePla1a, Adprh, Cd80, LOC667353, Ck-ps3, 4930455C21Rik, 9630046K23Rik, Tmem39a, Cdgap, B4galt4, LOC100043289, Upk1b, 4930435E12Rik, Igsf11
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-193J02.bB6Ng01-193J02.g
ACCGA016504GA016505
length1,022945
definitionB6Ng01-193J02.b B6Ng01-193J02.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(38,371,771 - 38,372,797)(38,196,250 - 38,197,196)
sequence
gaattctctgttagagactatatacacctccttaaactcttgcctcccag
ggctagaaagttggctgaggggttaagagcacttgctgctcttgcagagg
acctaagtttgattctcacatccataccaggcagctcacaactgcctaac
tccagctccaatggatcgaatacctctggcttccgcaggtatctgtactc
atgtgtgcacacacacccccccaattaaaaataaatcttagacacacaca
cacttaaaaataaatctttttttcaagacagggtttctctgtgtagccct
ggctgtcctgaaactcactctgaaggccaggctggcctcaaactcataga
aatccacctgcctctgctctgcctcctgagtgctgagattaaaggtgtgt
gccaccaccacctggtttaaaaataaatcttgtaaaaatagacacctgac
ttcccattccaaccactcctcgtcctccatgtccactgtacccctcctcc
tctcctacatcctcggcttttgtacagcatctgatcgctaacagggccct
aaattagtcatcagggccagaagctgggtgctggtttcaggtttgcccct
gtaccagctgtgagacatccgttactaccatgtctgggcatatcgcctcc
tgagaaaattctgaagagaatactcacagtctgtccatcaccaacggctg
agcgagtggctttcacactctgtcatagcctgtgccctaaatgtccttat
cggcaagtcccagacaaaaaactctctatcaggcagagagcagatgagcc
taaggaagacctgacctaatgcagttccacgtttcaggaaggccaagcac
agcgagcatgggcgtttcccctgtgtaaggccgttaccgctctttccggt
gtttaaaggataaaataacggtttgggttttttttgtctacttttatgtt
agctacccccttcaatatttgctccccttttatggctgagattcaaagaa
ccataacatgttctgctttttt
gaattcactgtgagaaaaccgtaattacaggcagtagtacttagactact
gggtatgtatgttcagaagaataaagttggaatctatctttcttattaca
cttttgtggaggagagaacatttatacaatccatggaactgtgaattagc
acagacagtatggaaaaatatttgaaggttccttagaagacaaatgttta
attatagcatgatcaagtcccctcctgcacgagtatctatcccgaatact
tgagagtgtgaaagctgcgccctcggatagtcattgcagcattgtttgtc
gtagccaagatgtgaatgacaccagcctgtgtcatcgttcaagaaacaga
tggtgatgtcatcatcattgaataaatggatggcgatatgctttatttca
gcttgcagttctcaggccacactccatcactgagggaagtcagggctgaa
actcaaggcagcatcctagaggcagggactgaagtggaggccatggagat
gtgctgcttactggattgtgctcatggcttgctcagcctgctttcttatg
gcacacaggatcaccagcccagtggtaccaccacccacagtgacatgggt
cctcccatttcaatcttcagccatggaaaatgcactttagacttctctac
aggctagtcttatggaggtattgtttttaattgagagtccctcttcccaa
atgacactatcttatgtcatgttgacatagaactagccagcacacccctt
atccttttagaaagtctttcaggtatacacccttgtagctgcgtgtatga
gtagtgaaggattttatcttgggattgggcctggaatgtaaagttgttga
acctgaaagagctcaaagtaggttagaggaaaccaagcgagaccaaggaa
gtggctgtgtcatctcctggtacctgaagcaatggtgagcatgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_38371771_38372797
seq2: B6Ng01-193J02.b_44_1065 (reverse)

seq1  AAAAAAGCAGAACATGGTGATGTGTTCTTGTAACTCCAGCACTAAAAAGG  50
      ||||||||||||||| || ||| ||||||  ||   ||||  |||||  |
seq2  AAAAAAGCAGAACAT-GTTATG-GTTCTTTGAATCTCAGCCATAAAA--G  46

seq1  GGGAGCAAATATTAAAGGGGGTAGCTAACCATAAAAGTAAGACAAAAAAA  100
      ||||||||||||| |||||||||||||| ||||||||| |||||||||||
seq2  GGGAGCAAATATTGAAGGGGGTAGCTAA-CATAAAAGT-AGACAAAAAAA  94

seq1  ACCAAAACCCGTTATTTTATCCTTTAAAAACAACGGAAGAAGCGGTAACG  150
      ||| ||| |||||||||||||||||  ||||| |||||  ||||||||||
seq2  ACCCAAA-CCGTTATTTTATCCTTT--AAACACCGGAAAGAGCGGTAACG  141

seq1  GCC-TACACAGGGG-AACGCCCATGCTCGCTGTGCTTGGCCTT-CTG-AA  196
      ||| |||||||||| |||||||||||||||||||||||||||| ||| ||
seq2  GCCTTACACAGGGGAAACGCCCATGCTCGCTGTGCTTGGCCTTCCTGAAA  191

seq1  CGTGG-ACTGCATTTAGGTCAGGTCTTCCTTAGGCTCATCTGCTCTCTGC  245
      ||||| |||||| |||||||||||||||||||||||||||||||||||||
seq2  CGTGGAACTGCA-TTAGGTCAGGTCTTCCTTAGGCTCATCTGCTCTCTGC  240

seq1  CTGATAGAGAGTTTTTTGTCTGGGACTTGCCGATAAGGACATTTAGGGCA  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATAGAGAGTTTTTTGTCTGGGACTTGCCGATAAGGACATTTAGGGCA  290

seq1  CAGGCTATGACAGAGTGTGAAAGCCACTCGCTCAGCCGTTGGTGATGGAC  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCTATGACAGAGTGTGAAAGCCACTCGCTCAGCCGTTGGTGATGGAC  340

seq1  AGACTGTGAGTATTCTCTTCAGAATTTTCTCAGGAGGCGATATGCCCAGA  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTGTGAGTATTCTCTTCAGAATTTTCTCAGGAGGCGATATGCCCAGA  390

seq1  CATGGTAGTAACGGATGTCTCACAGCTGGTACAGGGGCAAACCTGAAACC  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGTAGTAACGGATGTCTCACAGCTGGTACAGGGGCAAACCTGAAACC  440

seq1  AGCACCCAGCTTCTGGCCCTGATGACTAATTTAGGGCCCTGTTAGCGATC  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACCCAGCTTCTGGCCCTGATGACTAATTTAGGGCCCTGTTAGCGATC  490

seq1  AGATGCTGTACAAAAGCCGAGGATGTAGGAGAGGAGGAGGGGTACAGTGG  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGCTGTACAAAAGCCGAGGATGTAGGAGAGGAGGAGGGGTACAGTGG  540

seq1  ACATGGAGGACGAGGAGTGGTTGGAATGGGAAGTCAGGTGTCTATTTTTA  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGGAGGACGAGGAGTGGTTGGAATGGGAAGTCAGGTGTCTATTTTTA  590

seq1  CAAGATTTATTTTTAAACCAGGTGGTGGTGGCACACACCTTTAATCTCAG  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGATTTATTTTTAAACCAGGTGGTGGTGGCACACACCTTTAATCTCAG  640

seq1  CACTCAGGAGGCAGAGCAGAGGCAGGTGGATTTCTATGAGTTTGAGGCCA  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCAGGAGGCAGAGCAGAGGCAGGTGGATTTCTATGAGTTTGAGGCCA  690

seq1  GCCTGGCCTTCAGAGTGAGTTTCAGGACAGCCAGGGCTACACAGAGAAAC  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGGCCTTCAGAGTGAGTTTCAGGACAGCCAGGGCTACACAGAGAAAC  740

seq1  CCTGTCTTGAAAAAAAGATTTATTTTTAAGTGTGTGTGTGTCTAAGATTT  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTCTTGAAAAAAAGATTTATTTTTAAGTGTGTGTGTGTCTAAGATTT  790

seq1  ATTTTTAATTGGGGGGGTGTGTGTGCACACATGAGTACAGATACCTGCGG  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTAATTGGGGGGGTGTGTGTGCACACATGAGTACAGATACCTGCGG  840

seq1  AAGCCAGAGGTATTCGATCCATTGGAGCTGGAGTTAGGCAGTTGTGAGCT  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCAGAGGTATTCGATCCATTGGAGCTGGAGTTAGGCAGTTGTGAGCT  890

seq1  GCCTGGTATGGATGTGAGAATCAAACTTAGGTCCTCTGCAAGAGCAGCAA  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGGTATGGATGTGAGAATCAAACTTAGGTCCTCTGCAAGAGCAGCAA  940

seq1  GTGCTCTTAACCCCTCAGCCAACTTTCTAGCCCTGGGAGGCAAGAGTTTA  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTCTTAACCCCTCAGCCAACTTTCTAGCCCTGGGAGGCAAGAGTTTA  990

seq1  AGGAGGTGTATATAGTCTCTAACAGAGAATTC  1027
      ||||||||||||||||||||||||||||||||
seq2  AGGAGGTGTATATAGTCTCTAACAGAGAATTC  1022

seq1: chr16_38196250_38197196
seq2: B6Ng01-193J02.g_68_1012

seq1  GAATTCACTGTGAGAAAACCGTAATTACAGGCAGTAGTACTTAGACTACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTGTGAGAAAACCGTAATTACAGGCAGTAGTACTTAGACTACT  50

seq1  GGGTATGTATGTTCAGAAGAATAAAGTTGGAATCTATCTTTCTTATTACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTATGTATGTTCAGAAGAATAAAGTTGGAATCTATCTTTCTTATTACA  100

seq1  CTTTTGTGGAGGAGAGAACATTTATACAATCCATGGAACTGTGAATTAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTGTGGAGGAGAGAACATTTATACAATCCATGGAACTGTGAATTAGC  150

seq1  ACAGACAGTATGGAAAAATATTTGAAGGTTCCTTAGAAGACAAATGTTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGACAGTATGGAAAAATATTTGAAGGTTCCTTAGAAGACAAATGTTTA  200

seq1  ATTATAGCATGATCAAGTCCCCTCCTGCACGAGTATCTATCCCGAATACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATAGCATGATCAAGTCCCCTCCTGCACGAGTATCTATCCCGAATACT  250

seq1  TGAGAGTGTGAAAGCTGCGCCCTCGGATAGTCATTGCAGCATTGTTTGTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAGTGTGAAAGCTGCGCCCTCGGATAGTCATTGCAGCATTGTTTGTC  300

seq1  GTAGCCAAGATGTGAATGACACCAGCCTGTGTCATCGTTCAAGAAACAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCCAAGATGTGAATGACACCAGCCTGTGTCATCGTTCAAGAAACAGA  350

seq1  TGGTGATGTCATCATCATTGAATAAATGGATGGCGATATGCTTTATTTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGATGTCATCATCATTGAATAAATGGATGGCGATATGCTTTATTTCA  400

seq1  GCTTGCAGTTCTCAGGCCACACTCCATCACTGAGGGAAGTCAGGGCTGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGCAGTTCTCAGGCCACACTCCATCACTGAGGGAAGTCAGGGCTGAA  450

seq1  ACTCAAGGCAGCATCCTAGAGGCAGGGACTGAAGTGGAGGCCATGGAGAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAAGGCAGCATCCTAGAGGCAGGGACTGAAGTGGAGGCCATGGAGAT  500

seq1  GTGCTGCTTACTGGATTGTGCTCATGGCTTGCTCAGCCTGCTTTCTTATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTGCTTACTGGATTGTGCTCATGGCTTGCTCAGCCTGCTTTCTTATG  550

seq1  GCACACAGGATCACCAGCCCAGTGGTACCACCACCCACAGTGACATGGGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACACAGGATCACCAGCCCAGTGGTACCACCACCCACAGTGACATGGGT  600

seq1  CCTCCCATTTCAATCTTCAGCCATGGAAAATGCACTTTAGACTTCTCTAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCCATTTCAATCTTCAGCCATGGAAAATGCACTTTAGACTTCTCTAC  650

seq1  AGGCTAGTCTTATGGAGGTATTGTTTTTAATTGAGAGTCCCTCTTCCCAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTAGTCTTATGGAGGTATTGTTTTTAATTGAGAGTCCCTCTTCCCAA  700

seq1  ATGACACTATCTTATGTCATGTTGACATAGAACTAGCCAGCACACCCCTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACACTATCTTATGTCATGTTGACATAGAACTAGCCAGCACACCCCTT  750

seq1  ATCCTTTTAGAAAGTCTTTCAGGGTATACACCCTTGTAGCTGCGTGTATT  800
      ||||||||||||||||||||| |||||||||||||||||||||||||| |
seq2  ATCCTTTTAGAAAGTCTTTCA-GGTATACACCCTTGTAGCTGCGTGTA-T  798

seq1  GAGTTAGTGAAGGATTTTATCTTGGGATTGGGCCTGGAATGTAGAAGTTG  850
      ||| ||||||||||||||||||||||||||||||||||||||| ||||||
seq2  GAG-TAGTGAAGGATTTTATCTTGGGATTGGGCCTGGAATGTA-AAGTTG  846

seq1  TTGAA-CTGAAGGAGCTCAAAGGTAGGTTTAGAGGAAA-CAAGCGAGACC  898
      ||||| ||||| ||||||||| ||||| |||||||||| |||||||||||
seq2  TTGAACCTGAAAGAGCTCAAA-GTAGG-TTAGAGGAAACCAAGCGAGACC  894

seq1  AAGGAGTGGGCTGTGTCATCT-CTGGTAACTG-AGCAGT-GTGAGCAGTG  945
      |||||   ||||||||||||| |||||| ||| |||| | ||||||| ||
seq2  AAGGAAGTGGCTGTGTCATCTCCTGGTACCTGAAGCAATGGTGAGCA-TG  943

seq1  TG  947
      ||
seq2  TG  945