BAC Information

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BAC

Clone NameB6Ng01-193L04
Chromosome16 (Build37)
Map Location 74,940,820 - 75,111,401
singlet/doubletdoublet
Overlap geneLOC665042
Upstream geneRobo2
Downstream geneD930038D03Rik, Rbm11, Stch, LOC546667, Samsn1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-193L04.bB6Ng01-193L04.g
ACCGA016595GA016596
length9741,057
definitionB6Ng01-193L04.b B6Ng01-193L04.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(74,940,820 - 74,941,789)(75,110,397 - 75,111,401)
sequence
gaattcagtagttgatctataagtggaaaaggttctcagatatctaaata
ccagcttgacatatggtcccaatactctgactgtacaaaactcagaattg
gcaagatgacctgtccatctgaatgcatccagatatggagcaagtgaaaa
gccagccatagctttctaccatgaaatgaagcatcaccaaaagtagtttt
acataaaactcatcacgaggaacttcaatagaactatttgttataaacat
ttatgaatgaggtgaattctgccttgaaaccttatccttctccatataac
caaaaaaaggttaaaatacaaaccacaatgtctatgattttgaagtcaaa
tatttgtgtatgtgatcttcctgaaaatccttccctatctaacagaagga
tcctgttactttgcaagtggaacatactacttgtaatgaaatcaatgcac
tcattatcaacacttatatgacttatttattttatttaaaaaatagaatt
atggaaatggctaaacttgggcattcgttcttcatccacaagatgtggat
tactatcatgaatcttgggacagaataatattttctctaaggctacatct
aggaagtagatttatgcatacaatgtagactcacatgtaggtgtagagtc
tgacatccaaaagctagtgcatatatcattatgtaaatatcatttttgtc
ctagcgagcttttctgcagagggtatatttggggaagaaaggacataggg
ttacttggaagagaggaaagcagaaaagatgaagtgcagatttatatatg
aaaagaataaaattttcaaatatgaaaacaaattccttgtatgttactgg
taaatggtggagagcataactgaatgggaaagggaagtacaagctttaaa
agacaagtgtgactgtgaaagtgggtggaacttttaatttattttgtcct
ttattatccaacctaatgatctct

gaattctcacctgaggaataccgaatggcagagaaacacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaacactgagat
tccacttcactccagtcagaatggctaagatcaaaaactcaggtgacagc
agacgttggcgaggatgtggagaaaggggaacactcctccattgttggtg
ggattgcaagcttgtacaaccactctggaaatcagtctggcggttcctta
gaaaattggacatagtactaccggaggatcccacaatacctctcctgagc
atatatccagaagatgtcccaaccggtaagaagaacacatgctccactat
gttcatagcagccttgtttataatagccagaagctggaaagaacccagat
gcccctcaacagaagaatggatacagaaaatgtggtatatttacacaatg
gaatactactcagctattaaaaaaacgaatttatgaaattcctaggcaaa
tggatggacctggagggtatcatcctgagtgaagtaattttgatcttcta
ggctcacattaaagtgagaaaaccaacacctagatgttgtggcacttata
tgttcaaatacataaatacatacaaacataacagcacacaaaactatatg
tgtgtgtatgaaagtttaaatgtattacttaatgcccatattcccttttc
attcacacacacacacacacacacacacacacacacacacacacacacac
acaaaattagagtaccatagacatcatagtacaaatatataacctcaaac
ctttattctttccccaaaatcaatcttcctcaatttcagaaatccgagtt
gctgctttattatcccacatctattagtttggagctctgttgaaaatgag
gaccatccgcaattaccatgcagacctctaaattcaacaactaattgttg
tcctaaggggacagtctgagagaagaaaggctccacactatacaaaacga
ttgcaaccaatcggtgttgttttgagctatgaagccaggccatctgacac
cacagaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_74940820_74941789
seq2: B6Ng01-193L04.b_45_1018

seq1  GAATTCAGTAGTTGATCTATAAGTGGAAAAGGTTCTCAGATATCTAAATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTAGTTGATCTATAAGTGGAAAAGGTTCTCAGATATCTAAATA  50

seq1  CCAGCTTGACATATGGTCCCAATACTCTGACTGTACAAAACTCAGAATTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCTTGACATATGGTCCCAATACTCTGACTGTACAAAACTCAGAATTG  100

seq1  GCAAGATGACCTGTCCATCTGAATGCATCCAGATATGGAGCAAGTGAAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGATGACCTGTCCATCTGAATGCATCCAGATATGGAGCAAGTGAAAA  150

seq1  GCCAGCCATAGCTTTCTACCATGAAATGAAGCATCACCAAAAGTAGTTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGCCATAGCTTTCTACCATGAAATGAAGCATCACCAAAAGTAGTTTT  200

seq1  ACATAAAACTCATCACGAGGAACTTCAATAGAACTATTTGTTATAAACAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAAAACTCATCACGAGGAACTTCAATAGAACTATTTGTTATAAACAT  250

seq1  TTATGAATGAGGTGAATTCTGCCTTGAAACCTTATCCTTCTCCATATAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGAATGAGGTGAATTCTGCCTTGAAACCTTATCCTTCTCCATATAAC  300

seq1  CAAAAAAAGGTTAAAATACAAACCACAATGTCTATGATTTTGAAGTCAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAAAAGGTTAAAATACAAACCACAATGTCTATGATTTTGAAGTCAAA  350

seq1  TATTTGTGTATGTGATCTTCCTGAAAATCCTTCCCTATCTAACAGAAGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTGTGTATGTGATCTTCCTGAAAATCCTTCCCTATCTAACAGAAGGA  400

seq1  TCCTGTTACTTTGCAAGTGGAACATACTACTTGTAATGAAATCAATGCAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGTTACTTTGCAAGTGGAACATACTACTTGTAATGAAATCAATGCAC  450

seq1  TCATTATCAACACTTATATGACTTATTTATTTTATTTAAAAAATAGAATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTATCAACACTTATATGACTTATTTATTTTATTTAAAAAATAGAATT  500

seq1  ATGGAAATGGCTAAACTTGGGCATTCGTTCTTCATCCACAAGATGTGGAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAAATGGCTAAACTTGGGCATTCGTTCTTCATCCACAAGATGTGGAT  550

seq1  TACTATCATGAATCTTGGGACAGAATAATATTTTCTCTAAGGCTACATCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTATCATGAATCTTGGGACAGAATAATATTTTCTCTAAGGCTACATCT  600

seq1  AGGAAGTAGATTTATGCATACAATGTAGACTCACATGTAGGTGTAGAGTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGTAGATTTATGCATACAATGTAGACTCACATGTAGGTGTAGAGTC  650

seq1  TGACATCCAAAAGCTAGTGCATATATCATTATGTAAATATCATTTTTGTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACATCCAAAAGCTAGTGCATATATCATTATGTAAATATCATTTTTGTC  700

seq1  CTAGCGAGCTTTTCTGCAGAGGGTATATTTGGGGAAGAAAGGACATAGGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCGAGCTTTTCTGCAGAGGGTATATTTGGGGAAGAAAGGACATAGGG  750

seq1  TTACTTGGAAGAGAGG-AAGCAGAAAAGATGAAGTGCAGATGTATATATG  799
      |||||||||||||||| |||||||||||||||||||||||| ||||||||
seq2  TTACTTGGAAGAGAGGAAAGCAGAAAAGATGAAGTGCAGATTTATATATG  800

seq1  -AAAGAATAAAATTTTCAAATATGAAAACAAA-TCCTTGTATGTTACTGG  847
       ||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  AAAAGAATAAAATTTTCAAATATGAAAACAAATTCCTTGTATGTTACTGG  850

seq1  TAAATGGTGGAGAGCATAACTGAAAGGGAAAGGGAAGTACAAGCTATAAA  897
      |||||||||||||||||||||||| |||||||||||||||||||| ||||
seq2  TAAATGGTGGAGAGCATAACTGAATGGGAAAGGGAAGTACAAGCTTTAAA  900

seq1  AGAC-AGTGTGACTGTGAAAGTGGGTGGAACTTTT-ATTTATTTTGTCCT  945
      |||| |||||||||||||||||||||||||||||| ||||||||||||||
seq2  AGACAAGTGTGACTGTGAAAGTGGGTGGAACTTTTAATTTATTTTGTCCT  950

seq1  TTATTATCCAACTAAATGATTCTCT  970
      ||||||||||||  ||||| |||||
seq2  TTATTATCCAACCTAATGA-TCTCT  974


seq1: chr16_75110397_75111401
seq2: B6Ng01-193L04.g_107_1123 (reverse)

seq1  TTCTGTGGTTGTCAGGATGGCTTGGCTTCATAAGCCTCCAAAACACACCG  50
      |||||||| ||||| |||||| ||||||||||   ||| |||  ||||||
seq2  TTCTGTGG-TGTCA-GATGGCCTGGCTTCATA--GCTCAAAACAACACCG  46

seq1  ATT-GTTGC-ATCGTTTTGTATAGTGT-GAGCCTTTC-TCTCTCAGACTG  96
      ||| ||||| ||||||||||||||||| ||||||||| ||||||||||||
seq2  ATTGGTTGCAATCGTTTTGTATAGTGTGGAGCCTTTCTTCTCTCAGACTG  96

seq1  TCCCC-TAGGACAAC-ATTAGTTGTTGGATTTAGA-GTCTGCATGGTAAT  143
      ||||| ||||||||| ||||||||||| ||||||| ||||||||||||||
seq2  TCCCCTTAGGACAACAATTAGTTGTTGAATTTAGAGGTCTGCATGGTAAT  146

seq1  TGCGGATGGT-CTCA-TTTCAAC--AGCTCCAAACT-ATAGATGTGGGAT  188
      |||||||||| |||| |||||||  ||||||||||| |||||||||||||
seq2  TGCGGATGGTCCTCATTTTCAACAGAGCTCCAAACTAATAGATGTGGGAT  196

seq1  AAT-AAGCAGC-ACTCGGATTTCTGAAATTTGAGG-AGATTGATTTTGGG  235
      ||| ||||||| |||||||||||||||| |||||| ||||||||||||||
seq2  AATAAAGCAGCAACTCGGATTTCTGAAA-TTGAGGAAGATTGATTTTGGG  245

seq1  GAA--GATTAAGGTTTGAGGTTATATATTTGTACTATGATTGTCTATGGT  283
      |||   || |||||||||||||||||||||||||||||| ||||||||||
seq2  GAAAGAATAAAGGTTTGAGGTTATATATTTGTACTATGA-TGTCTATGGT  294

seq1  ACTCTAATTTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  333
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTAATTTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  344

seq1  TGTGTGTGTGAATGAAAAGGGAATATGGGCATTAAGTAATACATTTAAAC  383
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGAATGAAAAGGGAATATGGGCATTAAGTAATACATTTAAAC  394

seq1  TTTCATACACACACATATAGTTTTGTGTGCTGTTATG-TTGTATGTATTT  432
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  TTTCATACACACACATATAGTTTTGTGTGCTGTTATGTTTGTATGTATTT  444

seq1  ATGTATTTGAACATATAAGTGCCACAACATCTAGGTGTTGGTTTTCTCAC  482
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATTTGAACATATAAGTGCCACAACATCTAGGTGTTGGTTTTCTCAC  494

seq1  TTTAATGTGAGCCTAGAAGATCAAAATTACTTCACTCAGGATGATACCCT  532
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATGTGAGCCTAGAAGATCAAAATTACTTCACTCAGGATGATACCCT  544

seq1  CCAGGTCCATCCATTTGCCTAGGAATTTCATAAATTCGTTTTTTTAATAG  582
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGTCCATCCATTTGCCTAGGAATTTCATAAATTCGTTTTTTTAATAG  594

seq1  CTGAGTAGTATTCCATTGTGTAAATATACCACATTTTCTGTATCCATTCT  632
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGTAGTATTCCATTGTGTAAATATACCACATTTTCTGTATCCATTCT  644

seq1  TCTGTTGAGGGGCATCTGGGTTCTTTCCAGCTTCTGGCTATTATAAACAA  682
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTGAGGGGCATCTGGGTTCTTTCCAGCTTCTGGCTATTATAAACAA  694

seq1  GGCTGCTATGAACATAGTGGAGCATGTGTTCTTCTTACCGGTTGGGACAT  732
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGCTATGAACATAGTGGAGCATGTGTTCTTCTTACCGGTTGGGACAT  744

seq1  CTTCTGGATATATGCTCAGGAGAGGTATTGTGGGATCCTCCGGTAGTACT  782
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGGATATATGCTCAGGAGAGGTATTGTGGGATCCTCCGGTAGTACT  794

seq1  ATGTCCAATTTTCTAAGGAACCGCCAGACTGATTTCCAGAGTGGTTGTAC  832
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCCAATTTTCTAAGGAACCGCCAGACTGATTTCCAGAGTGGTTGTAC  844

seq1  AAGCTTGCAATCCCACCAACAATGGAGGAGTGTTCCCCTTTCTCCACATC  882
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTTGCAATCCCACCAACAATGGAGGAGTGTTCCCCTTTCTCCACATC  894

seq1  CTCGCCAACGTCTGCTGTCACCTGAGTTTTTGATCTTAGCCATTCTGACT  932
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGCCAACGTCTGCTGTCACCTGAGTTTTTGATCTTAGCCATTCTGACT  944

seq1  GGAGTGAAGTGGAATCTCAGTGTTGTTTTGATTTGCATTTCCCTGATGAT  982
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTGAAGTGGAATCTCAGTGTTGTTTTGATTTGCATTTCCCTGATGAT  994

seq1  TAAGGATGTTGAACATTTTTTCA  1005
      |||||||||||||||||||||||
seq2  TAAGGATGTTGAACATTTTTTCA  1017


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