BAC Information

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BAC

Clone NameB6Ng01-194H08
Chromosome16 (Build37)
Map Location 74,906,300 - 75,068,950
singlet/doubletdoublet
Overlap geneLOC665042
Upstream geneRobo2
Downstream geneD930038D03Rik, Rbm11, Stch, LOC546667, Samsn1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-194H08.bB6Ng01-194H08.g
ACCGA017146GA017147
length1,1271,139
definitionB6Ng01-194H08.b B6Ng01-194H08.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(75,067,811 - 75,068,950)(74,906,300 - 74,907,444)
sequence
gaattcagctgaggatgcatctcatgatttaggccatagcatattgctct
aataaaattcacacaaaccaagtgatctatattggcgctctctgccctag
aagaacggaaatgaaaacaacccataagaagtatttgaagtataattctt
tcatttttctttgcttacatgacgatatgactatctctatctatagcaca
atgttcccagttgagagcaatgcagagtggttcagtaagtgagtgtctgg
caacacataggtgcccatctggataagtaggtatgtctgaggaatgagac
tctgatgaaattcaatttctgctttacaactttctgagtagaagaacaga
agttacccagaaagacagtttaaacattgccatgtttatctctgctgtgt
tattcaacaaacaaaaggagagaagactgagcctgggtgccatgcaggta
acacagatgtaatcaggacttggtttaggaactacagttggaccttgaag
aactgctgtgctcagcattatagtagtaaacttgtatagaaaaccttact
ttgtgagacaactgagggccttgcagaatccagaagataccgaggaaggg
atagttttatgcattcagtgtaggaaaattagacaacagagtctgcttca
tggcttccctgataccctcattgtgtccaatgactgtgcatggtttattc
gctacttaccattttgatatttcttgaatttgtaattaggctgagttttt
cttccaattatttttcagctagctcctgtctttcccattagaacatgtca
acgagtgatgctataaatagctatatagaacaagaaactcttaatctttc
attttttagttaaaactgatttgttgttttaccatttaaaagttttattt
taggaaaatatggatttgttaaaattaagtaataaaaactagaaaaaaaa
taggactatatactttaaaactggcagtcataattctgttttctgtctag
aatgctggcctttgggatttatacgcctttaatttagtatactatcaacc
acaaataaaacaatgtgagatagcagtgcatgactcagaaacgtgagagt
acttgatgctctgaggatggggaattt

gaattctgttacagttgcacacatattgcaggaagagtccaaacaaaggg
gaaagcaggaagctaaatctagctgtttttagctcctgctttcttcttgt
agcttcataaattctggacttctcacttcctttaatgcattgtagctctc
ggaaccacatgtcactgaccaacataaacctgttagtgatgctggaagga
aaaagaacagaagtgaagaatggagacaggaggcatgtttctttgaaaac
agcttagtgtttctcactgtaagtgacagttggaacaaattgtgctccct
gctttcaacaaaataaataaaaaggaaaaaagaaaaagaaaaaaaaagaa
agaagtaaaagtttgacagagaggactttgcactccatttttagcacttt
atacaataaaataagtaaataaataaataaaccacaaggacaatattttt
tctctatccaccatatttccaacaggttacatgaggctagaaacagaata
gatacagatacccagttttatacttcttaatatagaacaaagaaaagctt
agggtttatgtgtaaatataataacaacaaaagaagtgtgagcagagttt
agggtgttattcaaacgtatttgaatcatttccaacagtcaacaaagaaa
ataagctggggagtacttgaaaacaaaacagagtgaagattcttagaatc
aagctttattttgaagaggttagcattccgttccgtgcatataatagttt
ggaaataatggacatgtctgttggaacttagaaaggaatagtatgcatac
agtgaaaacaattccaaaatatggaaccaatacaatgaacttaattttcc
ttttctttcgaaagctttgattgcaaagatttctgcacagtggcaatatg
cagatagggaaagtgagaaggtgtgaagatactaaatttaaatttgtctt
tagacattcttttatattttagagtatattaggcacaaatgaaagaaaca
cttatttaacaccaacagaaaaagagctgatttcacagacgcagattagc
tattcagtggtgtttactagcctactagatgttcatggggggagaaggaa
gagcttagcaagccagcaattccataggaattagtcatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_75067811_75068950
seq2: B6Ng01-194H08.b_41_1167 (reverse)

seq1  AAATTTCCCCCATCCTCAGAGCATACAAGTACTTCCTCACGTTTCCTGAG  50
      |||||  ||||||||||||||||| ||||||||  ||||||||| |||||
seq2  AAATT--CCCCATCCTCAGAGCAT-CAAGTACT--CTCACGTTT-CTGAG  44

seq1  TCATGCACTTGCTATCTCACATTGTTTTATTTGT-GTTGATAAGTATTAC  99
      |||||||| ||||||||||||||||||||||||| |||||| |||||   
seq2  TCATGCAC-TGCTATCTCACATTGTTTTATTTGTGGTTGAT-AGTAT--A  90

seq1  CTAAATTAAAGGCCTTATAAAATCCCAAAGGCCAGCCATTTCTAGACAGA  149
      |||||||||||| | ||| |||||||||||||||||   |||||||||||
seq2  CTAAATTAAAGG-CGTAT-AAATCCCAAAGGCCAGC--ATTCTAGACAGA  136

seq1  AAACAGAATTATGACTGCCAGTTTTAAAGTATATAGTCCTATTTTTTTTC  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGAATTATGACTGCCAGTTTTAAAGTATATAGTCCTATTTTTTTTC  186

seq1  TAGTTTTTATTACTTAATTTTAACAAATCCATATTTTCCTAAAATAAAAC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTTTTATTACTTAATTTTAACAAATCCATATTTTCCTAAAATAAAAC  236

seq1  TTTTAAATGGTAAAACAACAAATCAGTTTTAACTAAAAAATGAAAGATTA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAATGGTAAAACAACAAATCAGTTTTAACTAAAAAATGAAAGATTA  286

seq1  AGAGTTTCTTGTTCTATATAGCTATTTATAGCATCACTCGTTGACATGTT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTTTCTTGTTCTATATAGCTATTTATAGCATCACTCGTTGACATGTT  336

seq1  CTAATGGGAAAGACAGGAGCTAGCTGAAAAATAATTGGAAGAAAAACTCA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATGGGAAAGACAGGAGCTAGCTGAAAAATAATTGGAAGAAAAACTCA  386

seq1  GCCTAATTACAAATTCAAGAAATATCAAAATGGTAAGTAGCGAATAAACC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTAATTACAAATTCAAGAAATATCAAAATGGTAAGTAGCGAATAAACC  436

seq1  ATGCACAGTCATTGGACACAATGAGGGTATCAGGGAAGCCATGAAGCAGA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCACAGTCATTGGACACAATGAGGGTATCAGGGAAGCCATGAAGCAGA  486

seq1  CTCTGTTGTCTAATTTTCCTACACTGAATGCATAAAACTATCCCTTCCTC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTTGTCTAATTTTCCTACACTGAATGCATAAAACTATCCCTTCCTC  536

seq1  GGTATCTTCTGGATTCTGCAAGGCCCTCAGTTGTCTCACAAAGTAAGGTT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATCTTCTGGATTCTGCAAGGCCCTCAGTTGTCTCACAAAGTAAGGTT  586

seq1  TTCTATACAAGTTTACTACTATAATGCTGAGCACAGCAGTTCTTCAAGGT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTATACAAGTTTACTACTATAATGCTGAGCACAGCAGTTCTTCAAGGT  636

seq1  CCAACTGTAGTTCCTAAACCAAGTCCTGATTACATCTGTGTTACCTGCAT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACTGTAGTTCCTAAACCAAGTCCTGATTACATCTGTGTTACCTGCAT  686

seq1  GGCACCCAGGCTCAGTCTTCTCTCCTTTTGTTTGTTGAATAACACAGCAG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACCCAGGCTCAGTCTTCTCTCCTTTTGTTTGTTGAATAACACAGCAG  736

seq1  AGATAAACATGGCAATGTTTAAACTGTCTTTCTGGGTAACTTCTGTTCTT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAAACATGGCAATGTTTAAACTGTCTTTCTGGGTAACTTCTGTTCTT  786

seq1  CTACTCAGAAAGTTGTAAAGCAGAAATTGAATTTCATCAGAGTCTCATTC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTCAGAAAGTTGTAAAGCAGAAATTGAATTTCATCAGAGTCTCATTC  836

seq1  CTCAGACATACCTACTTATCCAGATGGGCACCTATGTGTTGCCAGACACT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGACATACCTACTTATCCAGATGGGCACCTATGTGTTGCCAGACACT  886

seq1  CACTTACTGAACCACTCTGCATTGCTCTCAACTGGGAACATTGTGCTATA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTACTGAACCACTCTGCATTGCTCTCAACTGGGAACATTGTGCTATA  936

seq1  GATAGAGATAGTCATATCGTCATGTAAGCAAAGAAAAATGAAAGAATTAT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGAGATAGTCATATCGTCATGTAAGCAAAGAAAAATGAAAGAATTAT  986

seq1  ACTTCAAATACTTCTTATGGGTTGTTTTCATTTCCGTTCTTCTAGGGCAG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCAAATACTTCTTATGGGTTGTTTTCATTTCCGTTCTTCTAGGGCAG  1036

seq1  AGAGCGCCAATATAGATCACTTGGTTTGTGTGAATTTTATTAGAGCAATA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCGCCAATATAGATCACTTGGTTTGTGTGAATTTTATTAGAGCAATA  1086

seq1  TGCTATGGCCTAAATCATGAGATGCATCCTCAGCTGAATTC  1140
      |||||||||||||||||||||||||||||||||||||||||
seq2  TGCTATGGCCTAAATCATGAGATGCATCCTCAGCTGAATTC  1127


seq1: chr16_74906300_74907444
seq2: B6Ng01-194H08.g_66_1204

seq1  GAATTCTGTTACAGTTGCACACATATTGCAGGAAGAGTCCAAACAAAGGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTTACAGTTGCACACATATTGCAGGAAGAGTCCAAACAAAGGG  50

seq1  GAAAGCAGGAAGCTAAATCTAGCTGTTTTTAGCTCCTGCTTTCTTCTTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGCAGGAAGCTAAATCTAGCTGTTTTTAGCTCCTGCTTTCTTCTTGT  100

seq1  AGCTTCATAAATTCTGGACTTCTCACTTCCTTTAATGCATTGTAGCTCTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTCATAAATTCTGGACTTCTCACTTCCTTTAATGCATTGTAGCTCTC  150

seq1  GGAACCACATGTCACTGACCAACATAAACCTGTTAGTGATGCTGGAAGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACCACATGTCACTGACCAACATAAACCTGTTAGTGATGCTGGAAGGA  200

seq1  AAAAGAACAGAAGTGAAGAATGGAGACAGGAGGCATGTTTCTTTGAAAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAACAGAAGTGAAGAATGGAGACAGGAGGCATGTTTCTTTGAAAAC  250

seq1  AGCTTAGTGTTTCTCACTGTAAGTGACAGTTGGAACAAATTGTGCTCCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTAGTGTTTCTCACTGTAAGTGACAGTTGGAACAAATTGTGCTCCCT  300

seq1  GCTTTCAACAAAATAAATAAAAAGGAAAAAAGAAAAAGAAAAAAAAAGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTCAACAAAATAAATAAAAAGGAAAAAAGAAAAAGAAAAAAAAAGAA  350

seq1  AGAAGTAAAAGTTTGACAGAGAGGACTTTGCACTCCATTTTTAGCACTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGTAAAAGTTTGACAGAGAGGACTTTGCACTCCATTTTTAGCACTTT  400

seq1  ATACAATAAAATAAGTAAATAAATAAATAAACCACAAGGACAATATTTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAATAAAATAAGTAAATAAATAAATAAACCACAAGGACAATATTTTT  450

seq1  TCTCTATCCACCATATTTCCAACAGGTTACATGAGGCTAGAAACAGAATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTATCCACCATATTTCCAACAGGTTACATGAGGCTAGAAACAGAATA  500

seq1  GATACAGATACCCAGTTTTATACTTCTTAATATAGAACAAAGAAAAGCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACAGATACCCAGTTTTATACTTCTTAATATAGAACAAAGAAAAGCTT  550

seq1  AGGGTTTATGTGTAAATATAATAACAACAAAAGAAGTGTGAGCAGAGTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTTTATGTGTAAATATAATAACAACAAAAGAAGTGTGAGCAGAGTTT  600

seq1  AGGGTGTTATTCAAACGTATTTGAATCATTTCCAACAGTCAACAAAGAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTGTTATTCAAACGTATTTGAATCATTTCCAACAGTCAACAAAGAAA  650

seq1  ATAAGCTGGGGAGTACTTGAAAACAAAACAGAGTGAAGATTCTTAGAATC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGCTGGGGAGTACTTGAAAACAAAACAGAGTGAAGATTCTTAGAATC  700

seq1  AAGCTTTATTTTGAAGAGGTTAGCATTCCGTTCCGTGCATATAATAGTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTTTATTTTGAAGAGGTTAGCATTCCGTTCCGTGCATATAATAGTTT  750

seq1  GGAAATAATGGACATGTCTGTTGGAACTTAGAAAGGAATAGTATGCATAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAATAATGGACATGTCTGTTGGAACTTAGAAAGGAATAGTATGCATAC  800

seq1  AGTGAAAACAATTCCAAAATATGGAACCAATACAATGAACTTAATTTTCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAAAACAATTCCAAAATATGGAACCAATACAATGAACTTAATTTTCC  850

seq1  TTTTCTTTCGAAAGCTTTGATTGCAAAGATTTCTGCACAGTGGCAATATG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTTTCGAAAGCTTTGATTGCAAAGATTTCTGCACAGTGGCAATATG  900

seq1  CAGATAGGGAAAGTGAGAAGGTGTGAAGATAACTAAATTTAAAATTGTCT  950
      |||||||||||||||||||||||||||||| |||||||||||| ||||||
seq2  CAGATAGGGAAAGTGAGAAGGTGTGAAGAT-ACTAAATTTAAATTTGTCT  949

seq1  TTAGACAATTCTTTATATTTTAGAGTATAATTAGGCACAAATGAAAGAAA  1000
      ||||||| |  ||||||||||||||||| |||||||||||||||||||||
seq2  TTAGACATTCTTTTATATTTTAGAGTAT-ATTAGGCACAAATGAAAGAAA  998

seq1  CCACTTATTTAAACAACCCAACAGAAAAAGAGCTGATTTCACAGAACGCA  1050
       ||||||||| ||||  ||||||||||||||||||||||||||| |||||
seq2  -CACTTATTT-AACA--CCAACAGAAAAAGAGCTGATTTCACAG-ACGCA  1043

seq1  GATTAGCTATTCAGT-GTGTTTACTAAGCTACCACAGAAGGTCATGGGGA  1099
      ||||||||||||||| ||||||||||  ||||   ||| | |||||||| 
seq2  GATTAGCTATTCAGTGGTGTTTACTAGCCTAC--TAGATGTTCATGGGGG  1091

seq1  G---AGGAGAAGCCTAGCAGGCAGCCAATTCCATAGGGATTTAGTCATG  1145
      |   ||||  ||| ||||| ||   |||||||||| ||| |||||||||
seq2  GAGAAGGAAGAGCTTAGCAAGCCAGCAATTCCATA-GGAATTAGTCATG  1139


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