BAC Information

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BAC

Clone NameB6Ng01-194K19
Chromosome16 (Build37)
Map Location 53,510,411 - 53,669,406
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100043430, LOC667895
Downstream geneLOC433027, LOC100043442
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-194K19.bB6Ng01-194K19.g
ACCGA017304GA017305
length1,0931,033
definitionB6Ng01-194K19.b B6Ng01-194K19.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(53,510,411 - 53,511,516)(53,668,370 - 53,669,406)
sequence
gaattccaaactccaaattggctaaaacaaaaaaatcatcatattggaag
attaatccatatgtaaaaataccacaataaaacactttgttttcctctta
aggaatgtgtttcaaaatgagctaaatgcaaagagtagtactttgtcatg
ttaaaatggggagaagtttactggctggaaaacttttacttttgatttgg
aacaaaactctcttcttaacagacatgtcactatttgttgttaggttaat
gagtatacaatcaatcagtaactggcatttccaatatattagttccaaca
tttctcattataataaaaatctactgtttaatcattttcatttgttttgt
tatttatgaaatatcttatctatacttagagacagatattctcaaattga
aatcttttgcatattgtgtgttgttgttgttttcataagttaaaaattgt
tttaaattaacaatgtattgctctctttgtagccttctatctcctttcta
ttctgttttacacagtatctgaacaattctctattcaatatgtcatatat
ctcctagggttttaataatgatattatatattcatctttgtaatagtacc
ttattaacattctgttctgagattgtcttttatatacttccataacattt
caaaattatcatgaaaagtactttccttttgagaaagtcattattcatat
tgaaaggccaagtgacaatgtagagttacacaggtgtatgtgtgttcaca
tttcctcacatatatttctacttaaatatcagactctaggctagcatggg
tttcatatgtctagaactgaagagcctgtgatgatacaggagcttttcaa
agcctctgaaattgcactaggaaatgctgacatcaaacatgttcttggtg
ctctccaggacccagggacatccctgctgtgagaaacagaaaccttagag
cttgagtttcaatacactccctgatttcacaagtacaaaaatatccatca
cctccaagacatcaccacatatgggatttcattgagtgtgtgatcagagc
attcagtcagcatattgaatcaagttactggatctataagttg

gaattcaaattgctaagaaatcaagagcatgttaatggagtagtattttt
taatgacaaaaatgttaatggcgatagatgaatacaaattagtatttctc
cgtcagatgatcataactacccagtcatttccctggacatttgtcactat
tttgagtctagatttttggttatcacaaggctgaggtgataacagcattg
gacagagagcagatgtcattaagcaccatgggattcccaggagactcggc
ggtgacagaatcatccacagtgccgaccataaacggttgaggaacggagt
gttaagaaaatcagtgcaatgcacagtgctgaagtaggtgcttcagaatg
gtcagcatggaaaagttcagtgatgacctaagtttcctaccaatgccatt
ccttttctattctaaaacctacctaagcaaatgttccatgtgtttctaaa
tgcataactattgggaaagggaagaagtcagactgtgttgttgagtaaac
tatactaagagtaacttcttctaaatcatctaaatatatgtctttcagct
atctcacagagatagatatttgtatgtattttaccttgtaatttttactt
atttgcagtttttgttggactcctaacaatgcgtgggcatggaggtgttt
ctgactctattgactacttggggaccttttctctccttccgggatacctt
attgagcctttttaagagggtttatgcccagcaatttttgcatcttgtta
ggctaagtttggttgatatcactcggtgacttggtcttttacaaggggaa
ataccagagcaatggatgtgggagagaggggagtcagagtggctgattgg
aagaggagaagtgaggaagctgtagtcaggatgttatatatgaggaaaag
aataaataaaacaataccatatttattttggaaacagattcacccataca
ttgtgaaatcaattctctctgtaactaaaggtatctttgagcctctaatc
cctgtctctacctctatagtacctagatttcag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_53510411_53511516
seq2: B6Ng01-194K19.b_46_1138

seq1  GAATTCCAAACTCCAAATTGGCTAAAACAAAAAAATCATCATATTGGAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAACTCCAAATTGGCTAAAACAAAAAAATCATCATATTGGAAG  50

seq1  ATTAATCCATATGTAAAAATACCACAATAAAACACTTTGTTTTCCTCTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAATCCATATGTAAAAATACCACAATAAAACACTTTGTTTTCCTCTTA  100

seq1  AGGAATGTGTTTCAAAATGAGCTAAATGCAAAGAGTAGTACTTTGTCATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAATGTGTTTCAAAATGAGCTAAATGCAAAGAGTAGTACTTTGTCATG  150

seq1  TTAAAATGGGGAGAAGTTTACTGGCTGGAAAACTTTTACTTTTGATTTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAATGGGGAGAAGTTTACTGGCTGGAAAACTTTTACTTTTGATTTGG  200

seq1  AACAAAACTCTCTTCTTAACAGACATGTCACTATTTGTTGTTAGGTTAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAACTCTCTTCTTAACAGACATGTCACTATTTGTTGTTAGGTTAAT  250

seq1  GAGTATACAATCAATCAGTAACTGGCATTTCCAATATATTAGTTCCAACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTATACAATCAATCAGTAACTGGCATTTCCAATATATTAGTTCCAACA  300

seq1  TTTCTCATTATAATAAAAATCTACTGTTTAATCATTTTCATTTGTTTTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCATTATAATAAAAATCTACTGTTTAATCATTTTCATTTGTTTTGT  350

seq1  TATTTATGAAATATCTTATCTATACTTAGAGACAGATATTCTCAAATTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTATGAAATATCTTATCTATACTTAGAGACAGATATTCTCAAATTGA  400

seq1  AATCTTTTGCATATTGTGTGTTGTTGTTGTTTTCATAAGTTAAAAATTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTTTTGCATATTGTGTGTTGTTGTTGTTTTCATAAGTTAAAAATTGT  450

seq1  TTTAAATTAACAATGTATTGCTCTCTTTGTAGCCTTCTATCTCCTTTCTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAATTAACAATGTATTGCTCTCTTTGTAGCCTTCTATCTCCTTTCTA  500

seq1  TTCTGTTTTACACAGTATCTGAACAATTCTCTATTCAATATGTCATATAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTTTTACACAGTATCTGAACAATTCTCTATTCAATATGTCATATAT  550

seq1  CTCCTAGGGTTTTAATAATGATATTATATATTCATCTTTGTAATAGTACC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTAGGGTTTTAATAATGATATTATATATTCATCTTTGTAATAGTACC  600

seq1  TTATTAACATTCTGTTCTGAGATTGTCTTTTATATACTTCCATAACATTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTAACATTCTGTTCTGAGATTGTCTTTTATATACTTCCATAACATTT  650

seq1  CAAAATTATCATGAAAAGTACTTTCCTTTTGAGAAAGTCATTATTCATAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATTATCATGAAAAGTACTTTCCTTTTGAGAAAGTCATTATTCATAT  700

seq1  TGAAAGGCCAAGTGACAATGTAGAGTTACACAGGTGTATGTGTGTTCACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAGGCCAAGTGACAATGTAGAGTTACACAGGTGTATGTGTGTTCACA  750

seq1  TTTCCTCACATATATTTCTACTTAAATATCAGACTCTAGGCTAGCATGGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTCACATATATTTCTACTTAAATATCAGACTCTAGGCTAGCATGGG  800

seq1  TTTCATATGTCTAGAACTGAAGAGCCTGTGATGATACAGGAGCTTTTCAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATATGTCTAGAACTGAAGAGCCTGTGATGATACAGGAGCTTTTCAA  850

seq1  AGCCTCTGAAATTGCACTAGGAAATGCTGACAATCAAACATGTTCTTGGT  900
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  AGCCTCTGAAATTGCACTAGGAAATGCTGAC-ATCAAACATGTTCTTGGT  899

seq1  GCTCTCCAGGACCCAGGGACATCCCTGCTGTGAGAAAACAGAAACCTTAG  950
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  GCTCTCCAGGACCCAGGGACATCCCTGCTGTGAG-AAACAGAAACCTTAG  948

seq1  AGCTTGAGTTTCAATAACACTCCCTTGATTTCACAAGTACAAAAATATCC  1000
      ||||||||||||||| |||||||| |||||||||||||||||||||||||
seq2  AGCTTGAGTTTCAAT-ACACTCCC-TGATTTCACAAGTACAAAAATATCC  996

seq1  ATCACCTCCAAAGACAATCACCACATAT-GGATTTCATTGAGTGTGTGAA  1049
      ||||||||| ||||| |||||||||||| ||||||||||||||||||| |
seq2  ATCACCTCC-AAGAC-ATCACCACATATGGGATTTCATTGAGTGTGTG-A  1043

seq1  TCAGAGCATTCAAGGTCAGCATATTGAAACCAAAGTTACTGGATCTAATT  1099
      ||||||||||||  |||||||||||||| |  |||||||||||||||   
seq2  TCAGAGCATTCA--GTCAGCATATTGAATC--AAGTTACTGGATCTA---  1086

seq1  AAAGTTG  1106
       ||||||
seq2  TAAGTTG  1093


seq1: chr16_53668370_53669406
seq2: B6Ng01-194K19.g_65_1097 (reverse)

seq1  CTGAAATTCTA-GTACTATAGAGGTAGAGAACAGGGGATTAGAGGCTCAA  49
      |||||| |||| ||||||||||||||||| ||| ||||||||||||||||
seq2  CTGAAA-TCTAGGTACTATAGAGGTAGAG-ACA-GGGATTAGAGGCTCAA  47

seq1  AGATACCTTTAGTTACAGAGAGAATTTGATTTCAACAATGTATGGGTGAA  99
      |||||||||||||||||||||||| |||||||| ||||||||||||||||
seq2  AGATACCTTTAGTTACAGAGAGAA-TTGATTTC-ACAATGTATGGGTGAA  95

seq1  TCTGTTT-CAAAATAAATATGGTATTTGTTTTATTTATTCTTTT-CTCAT  147
      ||||||| |||||||||||||||| ||||||||||||||||||| |||||
seq2  TCTGTTTCCAAAATAAATATGGTA-TTGTTTTATTTATTCTTTTCCTCAT  144

seq1  ATAATACATCCTGACTACAGCTTCCTCACCTTCTCCTCTTCCAATCAGCC  197
      |||  ||||||||||||||||||||||| |||||||||||||||||||||
seq2  ATATAACATCCTGACTACAGCTTCCTCA-CTTCTCCTCTTCCAATCAGCC  193

seq1  ACTCTGACTCCCCTCTCTCCCACATCCATTGCTCTGGTATTTCCCCTTGT  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTGACTCCCCTCTCTCCCACATCCATTGCTCTGGTATTTCCCCTTGT  243

seq1  AAAAGACCAAGTCACCGAGTGATATCAACCAAACTTAGCCTAACAAGATG  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGACCAAGTCACCGAGTGATATCAACCAAACTTAGCCTAACAAGATG  293

seq1  CAAAAATTGCTGGGCATAAACCCTCTTAAAAAGGCTCAATAAGGTATCCC  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAATTGCTGGGCATAAACCCTCTTAAAAAGGCTCAATAAGGTATCCC  343

seq1  GGAAGGAGAGAAAAGGTCCCCAAGTAGTCAATAGAGTCAGAAACACCTCC  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGGAGAGAAAAGGTCCCCAAGTAGTCAATAGAGTCAGAAACACCTCC  393

seq1  ATGCCCACGCATTGTTAGGAGTCCAACAAAAACTGCAAATAAGTAAAAAT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCCACGCATTGTTAGGAGTCCAACAAAAACTGCAAATAAGTAAAAAT  443

seq1  TACAAGGTAAAATACATACAAATATCTATCTCTGTGAGATAGCTGAAAGA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAGGTAAAATACATACAAATATCTATCTCTGTGAGATAGCTGAAAGA  493

seq1  CATATATTTAGATGATTTAGAAGAAGTTACTCTTAGTATAGTTTACTCAA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATATTTAGATGATTTAGAAGAAGTTACTCTTAGTATAGTTTACTCAA  543

seq1  CAACACAGTCTGACTTCTTCCCTTTCCCAATAGTTATGCATTTAGAAACA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACACAGTCTGACTTCTTCCCTTTCCCAATAGTTATGCATTTAGAAACA  593

seq1  CATGGAACATTTGCTTAGGTAGGTTTTAGAATAGAAAAGGAATGGCATTG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGAACATTTGCTTAGGTAGGTTTTAGAATAGAAAAGGAATGGCATTG  643

seq1  GTAGGAAACTTAGGTCATCACTGAACTTTTCCATGCTGACCATTCTGAAG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGAAACTTAGGTCATCACTGAACTTTTCCATGCTGACCATTCTGAAG  693

seq1  CACCTACTTCAGCACTGTGCATTGCACTGATTTTCTTAACACTCCGTTCC  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTACTTCAGCACTGTGCATTGCACTGATTTTCTTAACACTCCGTTCC  743

seq1  TCAACCGTTTATGGTCGGCACTGTGGATGATTCTGTCACCGCCGAGTCTC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACCGTTTATGGTCGGCACTGTGGATGATTCTGTCACCGCCGAGTCTC  793

seq1  CTGGGAATCCCATGGTGCTTAATGACATCTGCTCTCTGTCCAATGCTGTT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGAATCCCATGGTGCTTAATGACATCTGCTCTCTGTCCAATGCTGTT  843

seq1  ATCACCTCAGCCTTGTGATAACCAAAAATCTAGACTCAAAATAGTGACAA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACCTCAGCCTTGTGATAACCAAAAATCTAGACTCAAAATAGTGACAA  893

seq1  ATGTCCAGGGAAATGACTGGGTAGTTATGATCATCTGACGGAGAAATACT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCCAGGGAAATGACTGGGTAGTTATGATCATCTGACGGAGAAATACT  943

seq1  AATTTGTATTCATCTATCGCCATTAACATTTTTGTCATTAAAAAATACTA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTGTATTCATCTATCGCCATTAACATTTTTGTCATTAAAAAATACTA  993

seq1  CTCCATTAACATGCTCTTGATTTCTTAGCAATTTGAATTC  1037
      ||||||||||||||||||||||||||||||||||||||||
seq2  CTCCATTAACATGCTCTTGATTTCTTAGCAATTTGAATTC  1033


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