BAC Information

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BAC

Clone NameB6Ng01-195A06
Chromosome16 (Build37)
Map Location 68,347,985 - 68,450,443
singlet/doubletdoublet
Overlap genenone
Upstream geneCadm2, 9330155M09Rik
Downstream geneEG626609
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-195A06.bB6Ng01-195A06.g
ACCGA017552GA017553
length1,2281,074
definitionB6Ng01-195A06.b B6Ng01-195A06.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(68,347,985 - 68,349,213)(68,449,384 - 68,450,443)
sequence
gaattcaataacactgccctcattcctattcctcatcaaaatttatttgc
agttccttctgatggaatgctattcccaagctgtttctgttggctaagaa
gccccaaattttctagtatatgttcacatgtcagcttcccagaaaagatt
tcgcaaataatttaatttaaggcaatagttggtctatcccatgtttctgt
tttcttcacactgtgtcacaacttggatgattttatttatggtatgaaca
ttttgcttcttctcaataacactaaatgtttgtttcatttgacattgcct
aactttcttttaatatctccatttaatatttcatttcgccttctctatgg
cacttattttctcagttgctttctcttggtttaataagatgctataaggt
tttctaaacatatctcagcattgtgaacttgttatcacctataaatgatg
ttccaggtaaatacttctgtggtggtatttcaataacacaaaacatatac
ttacatgaatgttaaaaacatatataataagatttaaagttagactacaa
tagttaaatgatagataaagtaattagttttgaagttaatttgggatagt
cagcatatcttttcaaaagaaggaaatgcagtccaagaagaaagaggaaa
tctttggaccaaatgcttctgggacacacataataatcctgatacctaat
ttttaaatgaagctagtattaaataattacatatgtattataatgtatgt
gaactttttaacacaaacatgagtaattgtaatctcatatctcaaggaca
attaataattaaatgcatatgaaccactgtaccacacatatcttaaggct
accatgaagaaacagataaagtgttctaaaagtgcaatgcaaatatacaa
agataattgcttgattagacacttggagatgctttatataaaaatagtaa
aaaaaatgccattcattagttagatacaacacaagacaattgaaagagta
ttagttaagcacatttttatttcatttttcatcttataaaattacagatg
atctgacatacaggaattatggtctcaaatagtgaggtgtcagtgggaga
tcttatatgagaaacaaaacatgtgaaagaaggactaaaggctaataggt
ttagcctgaaagatcctatttaattgtttgacttagacaatacacctcgg
accgaaggtgttgtatactaatcttgta

gaattcaaaagttcaatatattttctgaaaactatttctgaaacatgctt
tattctggcaataaataagggggattttaaaaagttctacaagaaagtaa
aataaaactcaaatagaatgtgtgtgcctcatctaagtcttaaattatta
acatttatcagtgttttatataaaataaatactatataacatttcctcta
ttaaattatccttttctgtttaaaatctaataaaagttttcataagaaat
cattgacaaaaatgtacaattttagatctgtaaagagaaaaagagaaaat
ccaatgtcattgaaaccagtttgagaagaatttcaaaatgaaaggtagta
ttgattcttcatgtccaaggttagcttgtcaatggtgatggaacactact
ctgggtcaagatgaaggtttctggtggataaaaaggaagaaaaacctcaa
gagaattaaaatgacagatgatatgtgaaagccatgttgtcaatgactga
agaaaaatgcagcttaatgtttgagtgttcagtatagcccacaagttctt
tgtcgcatacagaaaatagtgaatcacataggcaagtgagacactgggat
atatcattaatccaatactagtgcttctgtgtgtgtttgctcttgtaatg
gttttcctggtagctgacaagcacttcacgacttaacatgccatctgctt
tgctcaaaggtggctcagaggtgattattcttaagcatatttaaaaaaaa
aatattcaacaaaattaagaaagatgacattaataagctcactagtttaa
atctgatttttaagtattcatgtgggaatttactgaagagtaaataaaaa
attacaagctgaatagtgacccagaaatataaagggacacgatgggatgt
atcattctttgcttaaaacagcagtcccctaggagttactggaactacag
aaaactacatgccacttacataaaagcagaaagcaacaaaggatgctgtt
ttagcagcaaattaacctctttattatgtttatcgatatgtaagagactt
gtttcttaattcgggttgccatat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_68347985_68349213
seq2: B6Ng01-195A06.b_48_1275

seq1  GAATTCAATAACACTGCCCTCATTCCTATTCCTCATCAAAATTTATTTGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATAACACTGCCCTCATTCCTATTCCTCATCAAAATTTATTTGC  50

seq1  AGTTCCTTCTGATGGAATGCTATTCCCAAGCTGTTTCTGTTGGCTAAGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCCTTCTGATGGAATGCTATTCCCAAGCTGTTTCTGTTGGCTAAGAA  100

seq1  GCCCCAAATTTTCTAGTATATGTTCACATGTCAGCTTCCCAGAAAAGATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCAAATTTTCTAGTATATGTTCACATGTCAGCTTCCCAGAAAAGATT  150

seq1  TCGCAAATAATTTAATTTAAGGCAATAGTTGGTCTATCCCATGTTTCTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGCAAATAATTTAATTTAAGGCAATAGTTGGTCTATCCCATGTTTCTGT  200

seq1  TTTCTTCACACTGTGTCACAACTTGGATGATTTTATTTATGGTATGAACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTCACACTGTGTCACAACTTGGATGATTTTATTTATGGTATGAACA  250

seq1  TTTTGCTTCTTCTCAATAACACTAAATGTTTGTTTCATTTGACATTGCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGCTTCTTCTCAATAACACTAAATGTTTGTTTCATTTGACATTGCCT  300

seq1  AACTTTCTTTTAATATCTCCATTTAATATTTCATTTCGCCTTCTCTATGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTTCTTTTAATATCTCCATTTAATATTTCATTTCGCCTTCTCTATGG  350

seq1  CACTTATTTTCTCAGTTGCTTTCTCTTGGTTTAATAAGATGCTATAAGGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTATTTTCTCAGTTGCTTTCTCTTGGTTTAATAAGATGCTATAAGGT  400

seq1  TTTCTAAACATATCTCAGCATTGTGAACTTGTTATCACCTATAAATGATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTAAACATATCTCAGCATTGTGAACTTGTTATCACCTATAAATGATG  450

seq1  TTCCAGGTAAATACTTCTGTGGTGGTATTTCAATAACACAAAACATATAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAGGTAAATACTTCTGTGGTGGTATTTCAATAACACAAAACATATAC  500

seq1  TTACATGAATGTTAAAAACATATATAATAAGATTTAAAGTTAGACTACAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACATGAATGTTAAAAACATATATAATAAGATTTAAAGTTAGACTACAA  550

seq1  TAGTTAAATGATAGATAAAGTAATTAGTTTTGAAGTTAATTTGGGATAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTAAATGATAGATAAAGTAATTAGTTTTGAAGTTAATTTGGGATAGT  600

seq1  CAGCATATCTTTTCAAAAGAAGGAAATGCAGTCCAAGAAGAAAGAGGAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCATATCTTTTCAAAAGAAGGAAATGCAGTCCAAGAAGAAAGAGGAAA  650

seq1  TCTTTGGACCAAATGCTTCTGGGACACACATAATAATCCTGATACCTAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTGGACCAAATGCTTCTGGGACACACATAATAATCCTGATACCTAAT  700

seq1  TTTTAAATGAAGCTAGTATTAAATAATTACATATGTATTATAATGTATGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAATGAAGCTAGTATTAAATAATTACATATGTATTATAATGTATGT  750

seq1  GAACTTTTTAACACAAACATGAGTAATTGTAATCTCATATCTCAAGGACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTTTTTAACACAAACATGAGTAATTGTAATCTCATATCTCAAGGACA  800

seq1  ATTAATAATTAAATGCATATGAACCACTGTACCACACATATCTTAAGGCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAATAATTAAATGCATATGAACCACTGTACCACACATATCTTAAGGCT  850

seq1  ACCATGAAGAAACAGATAAAGTGTTCTAAAAGTGCAATGCAAATATACAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATGAAGAAACAGATAAAGTGTTCTAAAAGTGCAATGCAAATATACAA  900

seq1  AGATAATTGCTTGATTAGACACTTGGAGATGCTTTATATAAAAAAATAGT  950
      |||||||||||||||||||||||||||||||||||||||  |||||||||
seq2  AGATAATTGCTTGATTAGACACTTGGAGATGCTTTATAT--AAAAATAGT  948

seq1  AAAAAAAATGCCATTCATTAGTTAGATACAACACAAGACAATTGAAAAGA  1000
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  AAAAAAAATGCCATTCATTAGTTAGATACAACACAAGACAATTG-AAAGA  997

seq1  GTATTAGTTAAGCACATTTTTATTTTCATTTTTCATCTTATAAAAATTAC  1050
      |||||||||||||||||||||| |||||||||||||||||| ||||||||
seq2  GTATTAGTTAAGCACATTTTTA-TTTCATTTTTCATCTTAT-AAAATTAC  1045

seq1  AAGAATGATCTGAACATACAGGAATTATGGTCTCAAATAGTGAGGTGTCA  1100
      |   |||||||| |||||||||||||||||||||||||||||||||||| 
seq2  A--GATGATCTG-ACATACAGGAATTATGGTCTCAAATAGTGAGGTGTC-  1091

seq1  AGTGGGAGAATCTTATATGAGAAAC-AAACATGGGAAAGAA-GAC-AAAA  1147
      |||||||| |||||||||||||||| ||||||| ||||||| ||| ||| 
seq2  AGTGGGAG-ATCTTATATGAGAAACAAAACATGTGAAAGAAGGACTAAAG  1140

seq1  GCT-ATA-GTTTAGGCCAGAAGATCATATTTAAACTGTTGACTATGACAA  1195
      ||| ||| |||||| |   |||||| |||||||    ||||||  |||||
seq2  GCTAATAGGTTTAGCCTGAAAGATCCTATTTAATTGTTTGACTTAGACAA  1190

seq1  -ACATGTCGGAACGAA-GTGTTGTATACTA--CTTGTA  1229
       |||  ||||| |||| |||||||||||||  ||||||
seq2  TACACCTCGGACCGAAGGTGTTGTATACTAATCTTGTA  1228


seq1: chr16_68449384_68450443
seq2: B6Ng01-195A06.g_65_1138 (reverse)

seq1  ATAT-GCAAACCGAA-TAAGAAACAGTTCTC-TACATA-CGATAAA-ATA  45
      |||| |||| ||||| |||||||||  |||| |||||| ||||||| |||
seq2  ATATGGCAACCCGAATTAAGAAACAAGTCTCTTACATATCGATAAACATA  50

seq1  AT-AAGAGGTT-ATTTGCTGCTAAAACAGCATTCCTTTGTTTGCTTTCTG  93
      || |||||||| ||||||||||||||||||| ||||||| ||||||||||
seq2  ATAAAGAGGTTAATTTGCTGCTAAAACAGCA-TCCTTTG-TTGCTTTCTG  98

seq1  CTTTTATGTAAGT-GCATGTAGTTTTCTGTAGTTCCAGTAACTCTTA-GG  141
      ||||||||||||| |||||||||||||||||||||||||||||| || ||
seq2  CTTTTATGTAAGTGGCATGTAGTTTTCTGTAGTTCCAGTAACTCCTAGGG  148

seq1  GACTGCTGTTTTAAGCAA--GATGATACAT-CCATCGTGT-CCTTTATAT  187
      ||||||||||||||||||   ||||||||| ||||||||| |||||||||
seq2  GACTGCTGTTTTAAGCAAAGAATGATACATCCCATCGTGTCCCTTTATAT  198

seq1  TTCTGGGTCACTATTCAGC-TGTAA-TTTTTATTTACTCTTCAGT-AATT  234
      ||||||||||||||||||| ||||| ||||||||||||||||||| ||||
seq2  TTCTGGGTCACTATTCAGCTTGTAATTTTTTATTTACTCTTCAGTAAATT  248

seq1  CCCACATGAATACTTAAAAATCAGATTTAAACTAGTGAGCTTATTAATGT  284
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACATGAATACTTAAAAATCAGATTTAAACTAGTGAGCTTATTAATGT  298

seq1  CATCTTTCTTAATTTTGTTGAATATTTTTTTTTTAAATATGCTTAAGAAT  334
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTTTCTTAATTTTGTTGAATATTTTTTTTTTAAATATGCTTAAGAAT  348

seq1  AATCACCTCTGAGCCACCTTTGAGCAAAGCAGATGGCATGTTAAGTCGTG  384
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCACCTCTGAGCCACCTTTGAGCAAAGCAGATGGCATGTTAAGTCGTG  398

seq1  AAGTGCTTGTCAGCTACCAGGAAAACCATTACAAGAGCAAACACACACAG  434
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGCTTGTCAGCTACCAGGAAAACCATTACAAGAGCAAACACACACAG  448

seq1  AAGCACTAGTATTGGATTAATGATATATCCCAGTGTCTCACTTGCCTATG  484
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCACTAGTATTGGATTAATGATATATCCCAGTGTCTCACTTGCCTATG  498

seq1  TGATTCACTATTTTCTGTATGCGACAAAGAACTTGTGGGCTATACTGAAC  534
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTCACTATTTTCTGTATGCGACAAAGAACTTGTGGGCTATACTGAAC  548

seq1  ACTCAAACATTAAGCTGCATTTTTCTTCAGTCATTGACAACATGGCTTTC  584
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAAACATTAAGCTGCATTTTTCTTCAGTCATTGACAACATGGCTTTC  598

seq1  ACATATCATCTGTCATTTTAATTCTCTTGAGGTTTTTCTTCCTTTTTATC  634
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATATCATCTGTCATTTTAATTCTCTTGAGGTTTTTCTTCCTTTTTATC  648

seq1  CACCAGAAACCTTCATCTTGACCCAGAGTAGTGTTCCATCACCATTGACA  684
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAGAAACCTTCATCTTGACCCAGAGTAGTGTTCCATCACCATTGACA  698

seq1  AGCTAACCTTGGACATGAAGAATCAATACTACCTTTCATTTTGAAATTCT  734
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTAACCTTGGACATGAAGAATCAATACTACCTTTCATTTTGAAATTCT  748

seq1  TCTCAAACTGGTTTCAATGACATTGGATTTTCTCTTTTTCTCTTTACAGA  784
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAAACTGGTTTCAATGACATTGGATTTTCTCTTTTTCTCTTTACAGA  798

seq1  TCTAAAATTGTACATTTTTGTCAATGATTTCTTATGAAAACTTTTATTAG  834
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAAATTGTACATTTTTGTCAATGATTTCTTATGAAAACTTTTATTAG  848

seq1  ATTTTAAACAGAAAAGGATAATTTAATAGAGGAAATGTTATATAGTATTT  884
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTAAACAGAAAAGGATAATTTAATAGAGGAAATGTTATATAGTATTT  898

seq1  ATTTTATATAAAACACTGATAAATGTTAATAATTTAAGACTTAGATGAGG  934
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTATATAAAACACTGATAAATGTTAATAATTTAAGACTTAGATGAGG  948

seq1  CACACACATTCTATTTGAGTTTTATTTTACTTTCTTGTAGAACTTTTTAA  984
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACATTCTATTTGAGTTTTATTTTACTTTCTTGTAGAACTTTTTAA  998

seq1  AATCCCCCTTATTTATTGCCAGAATAAAGCATGTTTCAGAAATAGTTTTC  1034
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCCCCTTATTTATTGCCAGAATAAAGCATGTTTCAGAAATAGTTTTC  1048

seq1  AGAAAATATATTGAACTTTTGAATTC  1060
      ||||||||||||||||||||||||||
seq2  AGAAAATATATTGAACTTTTGAATTC  1074


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