BAC Information

Click to search

BAC

Clone NameB6Ng01-196M22
Chromosome16 (Build37)
Map Location 24,706,471 - 24,817,869
singlet/doubletdoublet
Overlap geneLpp
Upstream geneEG625969, LOC100043023, Sst, Rtp2, Bcl6, EG433009, LOC666580, LOC100043564, 1110054M08Rik, A730098P11Rik
Downstream gene5430420C16Rik, Trp63
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-196M22.bB6Ng01-196M22.g
ACCGA018848GA018849
length1,1411,097
definitionB6Ng01-196M22.b B6Ng01-196M22.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(24,706,471 - 24,707,621)(24,816,782 - 24,817,869)
sequence
gaattctcagttgtgagccactgtgtgggtactgggattggaacctaggg
cctctgcaagagcagcacttaaccattgagctctactcttaaccattgag
cgtcttttcaacctttgtcatcattagtttttgagacaggtgtgtcattt
gaacttgaagttcacttcttttgagtggtaggctcagaactcctgaaatc
caaatgtctttgtttccaagtgctgggcctttgctgggggtctgaataca
ggtttcttgctttaaaagcaagttcttttatctaatgagccatattctta
gctttttctttcttttttttttatataatgggggaaagggagaaaagatg
atcaagaatttgtctttgtatatgttctgtttgtcctgttagaatctcag
tttctactgaataggtgtatattcgaggctcaaagtcaatctttcctctt
gatatctcattaggagtcagcagaatgaacttcagaactttgccacttaa
agactaaaatctgagacaatattttaatgcaatggagacaaccgaagaaa
tgatcttggaggcaaagaatatgcctgtgggaggaggccccaagcacagt
ggattctagaagctaggaagaacatttctgaagacgatccagtcacttgt
attgtatgatcaaaagcctaaagattgaaatttgaagcatacagttcaga
cctttggtggagtttaagatggcatgggcattctctgtgctcttcttcaa
tgtttattcacttttatcattttttgatttgtatggatgagcctgaggtg
ctaaatgatcattcagtgcagtgggccacagtgttagatcccagggcagg
gccctgcttcaacacatgctgttgtctgaacttctgtgacctaattaact
tttctctgttttaaaaaatagactacattcagtaaattgccaggctatag
ttattttgccatttttacctctgggttttggtttgcttggtttgtttgtt
ggttcttgaaattcaaaaaatcatcagatcctactagaaaagcctattac
tcacaaaactgaaaatctggataatgacaatttttctactcagatgcgag
tacctaagttaatcagaatcgaataaccatctaaacagttc

gaattctctctatagaccatgctggcctctgactcacagagatccacttg
cctctgccttccaagttctgggattaaagacatgcgccaccatacttggc
tactctgccttttctcctgcttttccctaaaaattatatcctagtcaccc
atgtaatccacacagagcccaacccagaagccagtgaacctttgctgttt
ctactcttctcctacgatcacacccatggcaatgattaaacctgaaactg
gcttggaggatggagagaaccccgatgcacaagacacaaaggaggaaaac
tcaatgcaaagaactgaaatgtatggttctagggagcttaagttacaagg
tgaggattccacacctcttccaatgcctactggccaacacattctcatgt
aatggaaaaggacagcctactaagagctttggactctgtctgtaccatag
agtgcagcttgagtgtgcactctaatgcctacacgggcatgctgctgtcg
agactcagtggtggaggcaaggctacagttttggcatattggcttctaaa
tttgacacattttcccacagcactctgaacagagcatatacgacacaggc
ctgaagcatgtctaattggttggggccattcagggtctttctttcttact
cttttcccctcctgggtccactttccttcagtttttataaaaaggaattt
tgttgagaatgtcatagttaagcactatatctctattactctatcctcct
accaactccttctgtgccccatccaggttcgtttttgatgcttagttttt
gaacagaaaataaagctgactgatgagactgatgagtggccactaatgct
gctctggcagcaaggcatgcccagtgtgctgcagccaacagtaccagagt
cggaagtgctaatttttcaatccttctatctctttaactaaggcagagca
gagcagggttgagtcctatccctttcatgctgaacaagttactcatttgt
gatggctaaactctgacaataactggaagagggaacctgcactgaagaca
cgcctccatccacttctgatctgttgggtattgtctggggggggggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_24706471_24707621
seq2: B6Ng01-196M22.b_45_1185

seq1  GAATTCTCAGTTGTGAGCCACTGTGTGGGTACTGGGATTGGAACCTAGGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCAGTTGTGAGCCACTGTGTGGGTACTGGGATTGGAACCTAGGG  50

seq1  CCTCTGCAAGAGCAGCACTTAACCATTGAGCTCTACTCTTAACCATTGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGCAAGAGCAGCACTTAACCATTGAGCTCTACTCTTAACCATTGAG  100

seq1  CGTCTTTTCAACCTTTGTCATCATTAGTTTTTGAGACAGGTGTGTCATTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTCTTTTCAACCTTTGTCATCATTAGTTTTTGAGACAGGTGTGTCATTT  150

seq1  GAACTTGAAGTTCACTTCTTTTGAGTGGTAGGCTCAGAACTCCTGAAATC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTTGAAGTTCACTTCTTTTGAGTGGTAGGCTCAGAACTCCTGAAATC  200

seq1  CAAATGTCTTTGTTTCCAAGTGCTGGGCCTTTGCTGGGGGTCTGAATACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATGTCTTTGTTTCCAAGTGCTGGGCCTTTGCTGGGGGTCTGAATACA  250

seq1  GGTTTCTTGCTTTAAAAGCAAGTTCTTTTATCTAATGAGCCATATTCTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTCTTGCTTTAAAAGCAAGTTCTTTTATCTAATGAGCCATATTCTTA  300

seq1  GCTTTTTCTTTCTTTTTTTTTTATATAATGGGGGAAAGGGAGAAAAGATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTTTCTTTCTTTTTTTTTTATATAATGGGGGAAAGGGAGAAAAGATG  350

seq1  ATCAAGAATTTGTCTTTGTATATGTTCTGTTTGTCCTGTTAGAATCTCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAGAATTTGTCTTTGTATATGTTCTGTTTGTCCTGTTAGAATCTCAG  400

seq1  TTTCTACTGAATAGGTGTATATTCGAGGCTCAAAGTCAATCTTTCCTCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTACTGAATAGGTGTATATTCGAGGCTCAAAGTCAATCTTTCCTCTT  450

seq1  GATATCTCATTAGGAGTCAGCAGAATGAACTTCAGAACTTTGCCACTTAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATCTCATTAGGAGTCAGCAGAATGAACTTCAGAACTTTGCCACTTAA  500

seq1  AGACTAAAATCTGAGACAATATTTTAATGCAATGGAGACAACCGAAGAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTAAAATCTGAGACAATATTTTAATGCAATGGAGACAACCGAAGAAA  550

seq1  TGATCTTGGAGGCAAAGAATATGCCTGTGGGAGGAGGCCCCAAGCACAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCTTGGAGGCAAAGAATATGCCTGTGGGAGGAGGCCCCAAGCACAGT  600

seq1  GGATTCTAGAAGCTAGGAAGAACATTTCTGAAGACGATCCAGTCACTTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTCTAGAAGCTAGGAAGAACATTTCTGAAGACGATCCAGTCACTTGT  650

seq1  ATTGTATGATCAAAAGCCTAAAGATTGAAATTTGAAGCATACAGTTCAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTATGATCAAAAGCCTAAAGATTGAAATTTGAAGCATACAGTTCAGA  700

seq1  CCTTTGGTGGAGTTTAAGATGGCATGGGCATTCTCTGTGCTCTTCTTCAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTGGTGGAGTTTAAGATGGCATGGGCATTCTCTGTGCTCTTCTTCAA  750

seq1  TGTTTATTCACTTTTATCATTTTTTGATTTGTATGGATGAGCCTGAGGTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTATTCACTTTTATCATTTTTTGATTTGTATGGATGAGCCTGAGGTG  800

seq1  CTAAATGATCATTCAGTGCAGTGGGCCACAGTGTTAGATCCCAGGGCAGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAATGATCATTCAGTGCAGTGGGCCACAGTGTTAGATCCCAGGGCAGG  850

seq1  GCCCTGCTTCAACACATGCTGTTGTCTGAACTTCTGTGACCTAATTAACT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTGCTTCAACACATGCTGTTGTCTGAACTTCTGTGACCTAATTAACT  900

seq1  TTTCTCTGTTTTAAAAAATAGACTACATTCAGTAAATTGCCAGGCTATAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCTGTTTTAAAAAATAGACTACATTCAGTAAATTGCCAGGCTATAG  950

seq1  TTATTTTGCCATTTTTACCTCTGGTTTTTGGTTTGCTTGGTTTTGTTTTG  1000
      |||||||||||||||||||||||| ||||||||||||||| |||||||  
seq2  TTATTTTGCCATTTTTACCTCTGGGTTTTGGTTTGCTTGG-TTTGTTT--  997

seq1  TTTGGTTCTTTGAAATTCAAAAAATCATCAGATCCTACTAGAAAAGCCTA  1050
       ||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGTTC-TTGAAATTCAAAAAATCATCAGATCCTACTAGAAAAGCCTA  1046

seq1  -TACTCAACAAAACTGGAAAATCTGGATTAAATGGACAA-TTTTCTACTC  1098
       ||||| |||||||| ||||||||||||  ||| ||||| ||||||||||
seq2  TTACTC-ACAAAACT-GAAAATCTGGAT--AAT-GACAATTTTTCTACTC  1091

seq1  AGATACCAGGTACCTAAGTTAAATCAGGATCAGATAAACCATCTAAACAG  1148
      |||| | | ||||||||||| |||||| ||| ||  ||||||||||||||
seq2  AGATGCGA-GTACCTAAGTT-AATCAGAATC-GAATAACCATCTAAACAG  1138

seq1  TTC  1151
      |||
seq2  TTC  1141


seq1: chr16_24816782_24817869
seq2: B6Ng01-196M22.g_65_1161 (reverse)

seq1  CCCCCCCCCCCAGAC-ATA-CCAACAGATCAG-AGT-GATGGAGGCGTGT  46
      ||||||||||||||| ||| |||||||||||| ||| |||||||||||||
seq2  CCCCCCCCCCCAGACAATACCCAACAGATCAGAAGTGGATGGAGGCGTGT  50

seq1  CTTCAGTGCAGGTTCCCTCTTCCAGTTA-TGTCAGAGTTTAGCCATCACA  95
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  CTTCAGTGCAGGTTCCCTCTTCCAGTTATTGTCAGAGTTTAGCCATCACA  100

seq1  AATGAGTAACTTGTTCAGCATGAAA-GGATAGGACTC-ACCCTGCTCTGC  143
      ||||||||||||||||||||||||| ||||||||||| ||||||||||||
seq2  AATGAGTAACTTGTTCAGCATGAAAGGGATAGGACTCAACCCTGCTCTGC  150

seq1  TCTGCCTTAGTTAAAGAGATAGAAGGATTGAAAA--TAGCACTTCCGACT  191
      ||||||||||||||||||||||||||||||||||  ||||||||||||||
seq2  TCTGCCTTAGTTAAAGAGATAGAAGGATTGAAAAATTAGCACTTCCGACT  200

seq1  CTGGTACTGTTGGCTGCAGCACACTGGGCATGCCTTGCTGCCAGAGCAGC  241
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTACTGTTGGCTGCAGCACACTGGGCATGCCTTGCTGCCAGAGCAGC  250

seq1  ATTAGTGGCCACTCATCAGTCTCATCAGTCAGCTTTATTTTCTGTTCAAA  291
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGTGGCCACTCATCAGTCTCATCAGTCAGCTTTATTTTCTGTTCAAA  300

seq1  AACTAAGCATCAAAAACGAACCTGGATGGGGCACAGAAGGAGTTGGTAGG  341
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAAGCATCAAAAACGAACCTGGATGGGGCACAGAAGGAGTTGGTAGG  350

seq1  AGGATAGAGTAATAGAGATATAGTGCTTAACTATGACATTCTCAACAAAA  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATAGAGTAATAGAGATATAGTGCTTAACTATGACATTCTCAACAAAA  400

seq1  TTCCTTTTTATAAAAACTGAAGGAAAGTGGACCCAGGAGGGGAAAAGAGT  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTTTTATAAAAACTGAAGGAAAGTGGACCCAGGAGGGGAAAAGAGT  450

seq1  AAGAAAGAAAGACCCTGAATGGCCCCAACCAATTAGACATGCTTCAGGCC  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAGAAAGACCCTGAATGGCCCCAACCAATTAGACATGCTTCAGGCC  500

seq1  TGTGTCGTATATGCTCTGTTCAGAGTGCTGTGGGAAAATGTGTCAAATTT  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTCGTATATGCTCTGTTCAGAGTGCTGTGGGAAAATGTGTCAAATTT  550

seq1  AGAAGCCAATATGCCAAAACTGTAGCCTTGCCTCCACCACTGAGTCTCGA  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGCCAATATGCCAAAACTGTAGCCTTGCCTCCACCACTGAGTCTCGA  600

seq1  CAGCAGCATGCCCGTGTAGGCATTAGAGTGCACACTCAAGCTGCACTCTA  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAGCATGCCCGTGTAGGCATTAGAGTGCACACTCAAGCTGCACTCTA  650

seq1  TGGTACAGACAGAGTCCAAAGCTCTTAGTAGGCTGTCCTTTTCCATTACA  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTACAGACAGAGTCCAAAGCTCTTAGTAGGCTGTCCTTTTCCATTACA  700

seq1  TGAGAATGTGTTGGCCAGTAGGCATTGGAAGAGGTGTGGAATCCTCACCT  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAATGTGTTGGCCAGTAGGCATTGGAAGAGGTGTGGAATCCTCACCT  750

seq1  TGTAACTTAAGCTCCCTAGAACCATACATTTCAGTTCTTTGCATTGAGTT  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAACTTAAGCTCCCTAGAACCATACATTTCAGTTCTTTGCATTGAGTT  800

seq1  TTCCTCCTTTGTGTCTTGTGCATCGGGGTTCTCTCCATCCTCCAAGCCAG  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTCCTTTGTGTCTTGTGCATCGGGGTTCTCTCCATCCTCCAAGCCAG  850

seq1  TTTCAGGTTTAATCATTGCCATGGGTGTGATCGTAGGAGAAGAGTAGAAA  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGGTTTAATCATTGCCATGGGTGTGATCGTAGGAGAAGAGTAGAAA  900

seq1  CAGCAAAGGTTCACTGGCTTCTGGGTTGGGCTCTGTGTGGATTACATGGG  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAAAGGTTCACTGGCTTCTGGGTTGGGCTCTGTGTGGATTACATGGG  950

seq1  TGACTAGGATATAATTTTTAGGGAAAAGCAGGAGAAAAGGCAGAGTAGCC  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTAGGATATAATTTTTAGGGAAAAGCAGGAGAAAAGGCAGAGTAGCC  1000

seq1  AAGTATGGTGGCGCATGTCTTTAATCCCAGAACTTGGAAGGCAGAGGCAA  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTATGGTGGCGCATGTCTTTAATCCCAGAACTTGGAAGGCAGAGGCAA  1050

seq1  GTGGATCTCTGTGAGTCAGAGGCCAGCATGGTCTATAGAGAGAATTC  1088
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGATCTCTGTGAGTCAGAGGCCAGCATGGTCTATAGAGAGAATTC  1097


| Home | SequenceCutter | Blast | Download |