BAC Information

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BAC

Clone NameB6Ng01-197E06
Chromosome16 (Build37)
Map Location 42,054,319 - 42,162,096
singlet/doubletdoublet
Overlap geneLsamp
Upstream geneEG667450
Downstream geneGap43, BC002163
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-197E06.bB6Ng01-197E06.g
ACCGA019177GA019178
length604987
definitionB6Ng01-197E06.b B6Ng01-197E06.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(42,054,319 - 42,054,922)(42,161,125 - 42,162,096)
sequence
gaattctatgatttgctgtaattcttttctgatagtatctttgcaaatgg
tattatgtgtaaagttacttattttgttctgtctcctttgcctttggggc
caaaagttctgcacagataagatgatgtaatataggtgatttgtcttaca
aaacgcattctcttgagttggccaatcttcttcctatttttctgcacaag
acacatcaatattttctatgcagtcataaaaaattttactcagaaaattt
ttgattgacccaattaacttgaacagtaaatcaatgcagttctactttta
taataaaatggaaattttagataaatgaaacagtaactgagcatttaatt
aaaaagaactttcagtgtgtttcagggctagttcacattagctacattcc
aaaatttcttggaatgaatctgatccgtcatttccagatacttttgtggc
tatacatgttgcaattattgaactaaacatggtctttttcttaatgctta
ctgtataccatggcaagttgagcctttttctaatatttgtaagtctttgt
gcaaaagtaaaaatgagattcatgttgtgtgtgtgtgtgtgtgtgtgtgt
gtgt

gaattcacagaaatgcaggcaacaggcacagagccgacacaggaggtttt
ctaggaagaagtctcaatatcaacaagaaagaaaagagtaaggaaagtgg
gactggacagaggaaggtgacctgttctgtgaggaactgtaaacccagat
aagctctagagttgtctggtatgatgggaaggaagggaggcctttataaa
cctcactgttacatcatctacccactgggtcgagttgctgtgtctggctg
aaggcaatgcataaggagcaacttggacaagaaccatcagctacaaatac
ttcaagcagaaggaaaaagacatgctccaggcttgaaggtgtaatctagg
ctaggtggcatgtatgccgtatggtagaatgtattcccgggcagtatctt
aacattcgtcagtaaggacggcaaagcaagcggctcacattaccctgagt
gtccacaatcttctcgagttactacagagaaagttctaaggaggactgtg
attggcctgtgacataggttcacgactaacttaggtgcttttctggtttt
tcaagtctggattatacattcaaaactgtattattttgtatatattatat
acatttcctttaaattcagggattatgataaacaataatcaagtatttga
agtgttctcatgattgtatacatcttatgtaaccatcacctaaaaacaag
atatagaaatgtgttccttctcccatcaagtttgtgcttttgctgtgaac
tttgagaagaatgagtttttaattttctactattttaagtggtcctgggc
ttttatataatgataaacatggtcccatgggtttttatattttaaaaaaa
aagtaaaatctaggaaattttcagaaaagcatttttctgatttatttggg
catcttgctttaactattctaaggtgattgaatccctccccttaaagtta
attgatagatatcatgccataaagaaagggaaggcca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_42054319_42054922
seq2: B6Ng01-197E06.b_44_647

seq1  GAATTCTATGATTTGCTGTAATTCTTTTCTGATAGTATCTTTGCAAATGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATGATTTGCTGTAATTCTTTTCTGATAGTATCTTTGCAAATGG  50

seq1  TATTATGTGTAAAGTTACTTATTTTGTTCTGTCTCCTTTGCCTTTGGGGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTATGTGTAAAGTTACTTATTTTGTTCTGTCTCCTTTGCCTTTGGGGC  100

seq1  CAAAAGTTCTGCACAGATAAGATGATGTAATATAGGTGATTTGTCTTACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAGTTCTGCACAGATAAGATGATGTAATATAGGTGATTTGTCTTACA  150

seq1  AAACGCATTCTCTTGAGTTGGCCAATCTTCTTCCTATTTTTCTGCACAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACGCATTCTCTTGAGTTGGCCAATCTTCTTCCTATTTTTCTGCACAAG  200

seq1  ACACATCAATATTTTCTATGCAGTCATAAAAAATTTTACTCAGAAAATTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATCAATATTTTCTATGCAGTCATAAAAAATTTTACTCAGAAAATTT  250

seq1  TTGATTGACCCAATTAACTTGAACAGTAAATCAATGCAGTTCTACTTTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATTGACCCAATTAACTTGAACAGTAAATCAATGCAGTTCTACTTTTA  300

seq1  TAATAAAATGGAAATTTTAGATAAATGAAACAGTAACTGAGCATTTAATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAAAATGGAAATTTTAGATAAATGAAACAGTAACTGAGCATTTAATT  350

seq1  AAAAAGAACTTTCAGTGTGTTTCAGGGCTAGTTCACATTAGCTACATTCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGAACTTTCAGTGTGTTTCAGGGCTAGTTCACATTAGCTACATTCC  400

seq1  AAAATTTCTTGGAATGAATCTGATCCGTCATTTCCAGATACTTTTGTGGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTTCTTGGAATGAATCTGATCCGTCATTTCCAGATACTTTTGTGGC  450

seq1  TATACATGTTGCAATTATTGAACTAAACATGGTCTTTTTCTTAATGCTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACATGTTGCAATTATTGAACTAAACATGGTCTTTTTCTTAATGCTTA  500

seq1  CTGTATACCATGGCAAGTTGAGCCTTTTTCTAATATTTGTAAGTCTTTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTATACCATGGCAAGTTGAGCCTTTTTCTAATATTTGTAAGTCTTTGT  550

seq1  GCAAAAGTAAAAATGAGATTCATGTTGTGTGTGTGTGTGTGTGTGTGTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAAGTAAAAATGAGATTCATGTTGTGTGTGTGTGTGTGTGTGTGTGT  600

seq1  GTGT  604
      ||||
seq2  GTGT  604


seq1: chr16_42161125_42162096
seq2: B6Ng01-197E06.g_64_1050 (reverse)

seq1  TGGCCTCTCCTTTCTTTTATTGCATGATATCTATCAACTTAACTTTAA-G  49
      ||||||  |||||| ||||| |||||||||||||||| |||||||||| |
seq2  TGGCCTTCCCTTTC-TTTATGGCATGATATCTATCAA-TTAACTTTAAGG  48

seq1  GGAGGGATTCAATCACCTTAGAATAGTTAAAGC-AGATG-CCAAAT-AAT  96
      ||||||||||||||||||||||||||||||||| ||||| |||||| |||
seq2  GGAGGGATTCAATCACCTTAGAATAGTTAAAGCAAGATGCCCAAATAAAT  98

seq1  CAG-AAAATGCTTTTCTGAAAATTTCCTAGA-TTTACTTTTTTTTT-AAA  143
      ||| ||||||||||||||||||||||||||| |||||||||||||| |||
seq2  CAGAAAAATGCTTTTCTGAAAATTTCCTAGATTTTACTTTTTTTTTAAAA  148

seq1  TATAAAAA-CCAT-GGACCATGTTTATCATTATAT-AAAGCCCAGGACCA  190
      |||||||| |||| ||||||||||||||||||||| ||||||||||||||
seq2  TATAAAAACCCATGGGACCATGTTTATCATTATATAAAAGCCCAGGACCA  198

seq1  CTTAAAATAGTAGAAA--TTAAAACTCATTCTTCTC-AAGTTCACAGCAA  237
      ||||||||||||||||  | |||||||||||||||| |||||||||||||
seq2  CTTAAAATAGTAGAAAATTAAAAACTCATTCTTCTCAAAGTTCACAGCAA  248

seq1  AAGCAC-AACTTGATGGGAGAAGGAACACA-TTCTATATCTTG-TTTTAG  284
      |||||| ||||||||||||||||||||||| |||||||||||| ||||||
seq2  AAGCACAAACTTGATGGGAGAAGGAACACATTTCTATATCTTGTTTTTAG  298

seq1  GTGATGGTTACAT-AGATGTATACAATCATGAGAACACTTCAAATACTTG  333
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  GTGATGGTTACATAAGATGTATACAATCATGAGAACACTTCAAATACTTG  348

seq1  ATTATTGTTTATCATAATCCCTGAATTTAAAGGAAATGTATATAATATAT  383
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTGTTTATCATAATCCCTGAATTTAAAGGAAATGTATATAATATAT  398

seq1  ACAAAATAATACAGTTTTGAATGTATAATCCAGACTTGAAAAACCAGAAA  433
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAATAATACAGTTTTGAATGTATAATCCAGACTTGAAAAACCAGAAA  448

seq1  AGCACCTAAGTTAGTCGTGAACCTATGTCACAGGCCAATCACAGTCCTCC  483
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACCTAAGTTAGTCGTGAACCTATGTCACAGGCCAATCACAGTCCTCC  498

seq1  TTAGAACTTTCTCTGTAGTAACTCGAGAAGATTGTGGACACTCAGGGTAA  533
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAACTTTCTCTGTAGTAACTCGAGAAGATTGTGGACACTCAGGGTAA  548

seq1  TGTGAGCCGCTTGCTTTGCCGTCCTTACTGACGAATGTTAAGATACTGCC  583
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAGCCGCTTGCTTTGCCGTCCTTACTGACGAATGTTAAGATACTGCC  598

seq1  CGGGAATACATTCTACCATACGGCATACATGCCACCTAGCCTAGATTACA  633
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGAATACATTCTACCATACGGCATACATGCCACCTAGCCTAGATTACA  648

seq1  CCTTCAAGCCTGGAGCATGTCTTTTTCCTTCTGCTTGAAGTATTTGTAGC  683
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCAAGCCTGGAGCATGTCTTTTTCCTTCTGCTTGAAGTATTTGTAGC  698

seq1  TGATGGTTCTTGTCCAAGTTGCTCCTTATGCATTGCCTTCAGCCAGACAC  733
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGGTTCTTGTCCAAGTTGCTCCTTATGCATTGCCTTCAGCCAGACAC  748

seq1  AGCAACTCGACCCAGTGGGTAGATGATGTAACAGTGAGGTTTATAAAGGC  783
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAACTCGACCCAGTGGGTAGATGATGTAACAGTGAGGTTTATAAAGGC  798

seq1  CTCCCTTCCTTCCCATCATACCAGACAACTCTAGAGCTTATCTGGGTTTA  833
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCTTCCTTCCCATCATACCAGACAACTCTAGAGCTTATCTGGGTTTA  848

seq1  CAGTTCCTCACAGAACAGGTCACCTTCCTCTGTCCAGTCCCACTTTCCTT  883
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTCCTCACAGAACAGGTCACCTTCCTCTGTCCAGTCCCACTTTCCTT  898

seq1  ACTCTTTTCTTTCTTGTTGATATTGAGACTTCTTCCTAGAAAACCTCCTG  933
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTTTTCTTTCTTGTTGATATTGAGACTTCTTCCTAGAAAACCTCCTG  948

seq1  TGTCGGCTCTGTGCCTGTTGCCTGCATTTCTGTGAATTC  972
      |||||||||||||||||||||||||||||||||||||||
seq2  TGTCGGCTCTGTGCCTGTTGCCTGCATTTCTGTGAATTC  987


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