BAC Information

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BAC

Clone NameB6Ng01-197N07
Chromosome16 (Build37)
Map Location 89,390,220 - 89,589,541
singlet/doubletdoublet
Overlap geneLOC100040456, Krtap21-1, Krtap6-2, 5430433J05Rik
Upstream geneEG622373, Cldn17, Cldn8, Gm312, 2310079G19Rik, 2310002B14Rik, EG665513, 2310061N02Rik, Krtap13-1, Krtap13, 2310034C09Rik, 2310057N15Rik, EG546672, EG433047, 4930553J12Rik, Krtap14, Krtap15, Krtap16-9, Krtap16-1, Krtap16-5, Krtap16-4, Krtap8-2, LOC100040191, AY026312, Krtap16-10, EG621595, LOC100040167, 1110032D16Rik, LOC100040201, Krtap6-1, LOC100040214, Krtap16-8, 1110025L11Rik, LOC100040249, LOC100040267, EG622794, LOC100040281, ENSMUSG00000044227, EG665661, LOC100040288, EG622935, EG622981, EG622998, EG623011, EG623026, LOC100040346, EG623049, LOC100040415, EG640636, LOC640652, LOC640654, LOC100040425, LOC100040374, LOC640656, LOC100040445
Downstream geneTiam1, LOC100040496, LOC640694, LOC100040440, Sod1, Sfrs15, LOC545175, Hunk
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-197N07.bB6Ng01-197N07.g
ACCGA019592GA019593
length1,1571,128
definitionB6Ng01-197N07.b B6Ng01-197N07.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(89,390,220 - 89,391,348)(89,588,423 - 89,589,541)
sequence
gaattcatttcctttgtcctgtctcaaagttttaaacataaattttcctg
aaatacctttcccattttcaggaatgaatgtctttatagaaaactctaat
tcaaaactcatgctgaatatcttacggatctgcacaccagttttgttgct
atggcacctttctggctcgcccttcggtctagtcaggtcatcttcaaaaa
ggtcacgaaatgcctctcactctctcatttccgaaactgtgccaccatca
tcaactgaccaagatactccaggactgctctgtgcctctttagaagtaga
tgaaattgtccaatcctagtgggatctttataatgtgggaaatctttggt
catcagagagatgaatcagagtccaggttctttgattgagacaatacaca
agacatattcttgaactagttggacattatctaaagtgtgtttggttgat
aatgtgtccctcatgcatttgctcaatccctcctaattatcctaacgttt
atttgctgccctgtgattacagcttcattaccatgcggggtcaatgcacc
atgcatggtagcagagcaaatccagttcagcagcagcaaggggcacacgt
cttctgccagtaacacacttgacttgaacaagtattttgttttaaatact
ttcgttgtgctgattctaaattgtagcactaccaaaaggattgacatgat
aggaaagagactgtcttgaaattatatctaccttgggatatactaaaact
tcaaaactatgtatctgaaagatttcggttaataaaaacataaattataa
agtatttattactcatgctaaggattgtgtcttagagaatcctatgagca
aatatattaattaatatcttaaaagttcaaattactgttttctctgtgaa
gacttccttttgaagaaattcatatggcaggctcttacaacagtttctta
caatgaaaaagtaaatttgcatcttaaagtatttatttaatggcgagcct
ttaaagaattatttgaaggaaggtcggtttaatttcataattttacatgt
gagggaaacaggaggtttggaaaaaaaagcgttattataactaaccaaag
gcagaagctgctccacgacaaatgttcacctggacatcaagtgtggcttg
gtcccca
gaattcttggctgtaagggaaatagcatggtgagtggaatgctgtagaga
agagcctggactccagtgtgtttttctaaaatagtgcctttaagaagaaa
tgagctagctaggcgtggtggctcacatttaacctcagctctggggaagc
agattcatgctgatctctgtaagttccaagccctgtcttaatagaaggag
gaagaagaggaggaggaggagggctcataattttgaataaaaaaatgaca
tttttccttagcattttgttatttggttcatagtacaagagaatataaga
ggtccatttttaaacagtagctagtaaaaacatgcactgtaccttctgaa
gctaaaagcaaaaatgtcaactttaaattagtttattttaatatgaaatc
acaaatattaagaattagaatacacctaaatcaactattgtgatcacaga
tataaaatcagttgactgggtcctaagctgttatggaagctgaggaagat
gcctgatattgacctctaacctctacgtgtccacccttgtcctgttacac
acgtgtcatatcagatgctgtgacacactctctctgttacacacttgtca
tatcagatgctgtgatactctctctgttacacacttgtcataccagatgc
tgtgacactctctctgttacacacttgtcatatcagatgctgtgacacat
tctctctgttacatactttgtcatatcagatgctgtgacactctctgtta
catacttgtcatatcagatggtgtgacacactccccgttacacacttgtc
atatcagatgctgtgacatactctccttgttacacactttgtcatatcag
atgctgtggcacactctctctgttacacacttgtcatatcagatgctgtg
acacacttttctctgttacacacttgtcatatcagatgggtgtgatacca
ctctctctgttaacacacttgtcatatcagaatgtatgaacatacttctg
ttacacacttgtcatatcagaatgcctgtgacacattcctcctcgttaca
cacttgcctatcagaatactgtgacactctcggttacacacttgtcattc
agaggttatgaatactctgttatacact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_89390220_89391348
seq2: B6Ng01-197N07.b_43_1199

seq1  GAATTCATTTCCTTTGTCCTGTCTCAAAGTTTTAAACATAAATTTTCCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTTCCTTTGTCCTGTCTCAAAGTTTTAAACATAAATTTTCCTG  50

seq1  AAATACCTTTCCCATTTTCAGGAATGAATGTCTTTATAGAAAACTCTAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATACCTTTCCCATTTTCAGGAATGAATGTCTTTATAGAAAACTCTAAT  100

seq1  TCAAAACTCATGCTGAATATCTTACGGATCTGCACACCAGTTTTGTTGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAACTCATGCTGAATATCTTACGGATCTGCACACCAGTTTTGTTGCT  150

seq1  ATGGCACCTTTCTGGCTCGCCCTTCGGTCTAGTCAGGTCATCTTCAAAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCACCTTTCTGGCTCGCCCTTCGGTCTAGTCAGGTCATCTTCAAAAA  200

seq1  GGTCACGAAATGCCTCTCACTCTCTCATTTCCGAAACTGTGCCACCATCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCACGAAATGCCTCTCACTCTCTCATTTCCGAAACTGTGCCACCATCA  250

seq1  TCAACTGACCAAGATACTCCAGGACTGCTCTGTGCCTCTTTAGAAGTAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACTGACCAAGATACTCCAGGACTGCTCTGTGCCTCTTTAGAAGTAGA  300

seq1  TGAAATTGTCCAATCCTAGTGGGATCTTTATAATGTGGGAAATCTTTGGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATTGTCCAATCCTAGTGGGATCTTTATAATGTGGGAAATCTTTGGT  350

seq1  CATCAGAGAGATGAATCAGAGTCCAGGTTCTTTGATTGAGACAATACACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAGAGAGATGAATCAGAGTCCAGGTTCTTTGATTGAGACAATACACA  400

seq1  AGACATATTCTTGAACTAGTTGGACATTATCTAAAGTGTGTTTGGTTGAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACATATTCTTGAACTAGTTGGACATTATCTAAAGTGTGTTTGGTTGAT  450

seq1  AATGTGTCCCTCATGCATTTGCTCAATCCCTCCTAATTATCCTAACGTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTGTCCCTCATGCATTTGCTCAATCCCTCCTAATTATCCTAACGTTT  500

seq1  ATTTGCTGCCCTGTGATTACAGCTTCATTACCATGCGGGGTCAATGCACC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGCTGCCCTGTGATTACAGCTTCATTACCATGCGGGGTCAATGCACC  550

seq1  ATGCATGGTAGCAGAGCAAATCCAGTTCAGCAGCAGCAAGGGGCACACGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCATGGTAGCAGAGCAAATCCAGTTCAGCAGCAGCAAGGGGCACACGT  600

seq1  CTTCTGCCAGTAACACACTTGACTTGAACAAGTATTTTGTTTTAAATACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGCCAGTAACACACTTGACTTGAACAAGTATTTTGTTTTAAATACT  650

seq1  TTCGTTGTGCTGATTCTAAATTGTAGCACTACCAAAAGGATTGACATGAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGTTGTGCTGATTCTAAATTGTAGCACTACCAAAAGGATTGACATGAT  700

seq1  AGGAAAGAGACTGTCTTGAAATTATATCTACCTTGGGATATACTAAAACT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAAGAGACTGTCTTGAAATTATATCTACCTTGGGATATACTAAAACT  750

seq1  TCAAAACTATGTATCTGAAAGATTTCGGTTAATAAAAACATAAATTATAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAACTATGTATCTGAAAGATTTCGGTTAATAAAAACATAAATTATAA  800

seq1  AGTATTTATTACTCATGCTAAGGATTGTGTCTTAGAGAATCCTATGAGCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATTTATTACTCATGCTAAGGATTGTGTCTTAGAGAATCCTATGAGCA  850

seq1  AATATATTAATTAATATCTT-AAAGTTCAAATTACTGTTTTCTCTGTGAA  899
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  AATATATTAATTAATATCTTAAAAGTTCAAATTACTGTTTTCTCTGTGAA  900

seq1  GACT--CCTTTGAAGAAATTCATATGGCAGGCTCTTACAACAG-TTCTTA  946
      ||||  | ||||||||||||||||||||||||||||||||||| ||||||
seq2  GACTTCCTTTTGAAGAAATTCATATGGCAGGCTCTTACAACAGTTTCTTA  950

seq1  CAATG-AAAAGTAAA-TTGCATCTTAAAGTATT--ATTAAT-GCGAGCCT  991
      ||||| ||||||||| |||||||||||||||||   ||||| ||||||||
seq2  CAATGAAAAAGTAAATTTGCATCTTAAAGTATTTATTTAATGGCGAGCCT  1000

seq1  TAAAAGAA-TATT--GAGGAA-GTC-GTTTAA-TTCAT-ATTTTACATGT  1034
      | |||||| ||||   ||||| ||| |||||| ||||| |||||||||||
seq2  TTAAAGAATTATTTGAAGGAAGGTCGGTTTAATTTCATAATTTTACATGT  1050

seq1  GA-GGAAACAG--AGTTTG--AAAAAAAGCGTTA-TATTACTAACC-AAG  1077
      || ||||||||   |||||  ||||||||||||| ||| ||||||| |||
seq2  GAGGGAAACAGGAGGTTTGGAAAAAAAAGCGTTATTATAACTAACCAAAG  1100

seq1  GCAGAAGCTGCT-CACGACAAATGTTCACCCTGACATCA---GTGGCTT-  1122
      |||||||||||| |||||||||||||||||  |||||||   ||||||| 
seq2  GCAGAAGCTGCTCCACGACAAATGTTCACCTGGACATCAAGTGTGGCTTG  1150

seq1  GTCCCCA  1129
      |||||||
seq2  GTCCCCA  1157

seq1: chr16_89588423_89589541
seq2: B6Ng01-197N07.g_70_1197 (reverse)

seq1  AGTGTATAACAGAGTATGTCATAACATCTGATATGACAAGTGTGTAACAG  50
      ||||||||||||||||| ||||||| ||||| |||||||||||||||| |
seq2  AGTGTATAACAGAGTAT-TCATAACCTCTGA-ATGACAAGTGTGTAACCG  48

seq1  AGAGTGTCACAGTA-TCTGATATGACAAGTGTGTAAC-AGAGAGAATGTG  98
      |||||||||||||| ||||||| | |||||||||||| ||   |||||||
seq2  AGAGTGTCACAGTATTCTGATA-GGCAAGTGTGTAACGAGGAGGAATGTG  97

seq1  TCACA-GCA-TCTGATATGACAAGTGTGTAACAG-AGTATG-TCATAACA  144
      ||||| ||| |||||||||||||||||||||||| |||||| |||||   
seq2  TCACAGGCATTCTGATATGACAAGTGTGTAACAGAAGTATGTTCATACAT  147

seq1  TCTGATATGACAAGTGTG-TAACAGAGAGAGT-GTATCACA-CCATCTGA  191
      |||||||||||||||||| ||||||||||||| |||||||| ||||||||
seq2  TCTGATATGACAAGTGTGTTAACAGAGAGAGTGGTATCACACCCATCTGA  197

seq1  TATGACAAGTGTGTAACAGAG-AGAGTGTGTCACAGCATCTGATATGACA  240
      ||||||||||||||||||||| | ||||||||||||||||||||||||||
seq2  TATGACAAGTGTGTAACAGAGAAAAGTGTGTCACAGCATCTGATATGACA  247

seq1  AGTGTGTAACAGAGAGAGTGTGCCACAGCATCTGATATGAC-AAGTGTGT  289
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  AGTGTGTAACAGAGAGAGTGTGCCACAGCATCTGATATGACAAAGTGTGT  297

seq1  AACAAGGAGAGTATGTCACAGCATCTGATATGACAAGTGTGTAACGGGGA  339
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAGGAGAGTATGTCACAGCATCTGATATGACAAGTGTGTAACGGGGA  347

seq1  GTGTGTCACACCATCTGATATGACAAGTATGTAACAGAGAGTGTCACAGC  389
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTCACACCATCTGATATGACAAGTATGTAACAGAGAGTGTCACAGC  397

seq1  ATCTGATATGAC-AAGTATGTAACAGAGAGAATGTGTCACAGCATCTGAT  438
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  ATCTGATATGACAAAGTATGTAACAGAGAGAATGTGTCACAGCATCTGAT  447

seq1  ATGACAAGTGTGTAACAGAGAGAGTGTCACAGCATCTGGTATGACAAGTG  488
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACAAGTGTGTAACAGAGAGAGTGTCACAGCATCTGGTATGACAAGTG  497

seq1  TGTAACAGAGAGAGTATCACAGCATCTGATATGACAAGTGTGTAACAGAG  538
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAACAGAGAGAGTATCACAGCATCTGATATGACAAGTGTGTAACAGAG  547

seq1  AGAGTGTGTCACAGCATCTGATATGACACGTGTGTAACAGGACAAGGGTG  588
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTGTGTCACAGCATCTGATATGACACGTGTGTAACAGGACAAGGGTG  597

seq1  GACACGTAGAGGTTAGAGGTCAATATCAGGCATCTTCCTCAGCTTCCATA  638
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACGTAGAGGTTAGAGGTCAATATCAGGCATCTTCCTCAGCTTCCATA  647

seq1  ACAGCTTAGGACCCAGTCAACTGATTTTATATCTGTGATCACAATAGTTG  688
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCTTAGGACCCAGTCAACTGATTTTATATCTGTGATCACAATAGTTG  697

seq1  ATTTAGGTGTATTCTAATTCTTAATATTTGTGATTTCATATTAAAATAAA  738
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAGGTGTATTCTAATTCTTAATATTTGTGATTTCATATTAAAATAAA  747

seq1  CTAATTTAAAGTTGACATTTTTGCTTTTAGCTTCAGAAGGTACAGTGCAT  788
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATTTAAAGTTGACATTTTTGCTTTTAGCTTCAGAAGGTACAGTGCAT  797

seq1  GTTTTTACTAGCTACTGTTTAAAAATGGACCTCTTATATTCTCTTGTACT  838
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTACTAGCTACTGTTTAAAAATGGACCTCTTATATTCTCTTGTACT  847

seq1  ATGAACCAAATAACAAAATGCTAAGGAAAAATGTCATTTTTTTATTCAAA  888
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAACCAAATAACAAAATGCTAAGGAAAAATGTCATTTTTTTATTCAAA  897

seq1  ATTATGAGCCCTCCTCCTCCTCCTCTTCTTCCTCCTTCTATTAAGACAGG  938
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATGAGCCCTCCTCCTCCTCCTCTTCTTCCTCCTTCTATTAAGACAGG  947

seq1  GCTTGGAACTTACAGAGATCAGCATGAATCTGCTTCCCCAGAGCTGAGGT  988
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGGAACTTACAGAGATCAGCATGAATCTGCTTCCCCAGAGCTGAGGT  997

seq1  TAAATGTGAGCCACCACGCCTAGCTAGCTCATTTCTTCTTAAAGGCACTA  1038
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATGTGAGCCACCACGCCTAGCTAGCTCATTTCTTCTTAAAGGCACTA  1047

seq1  TTTTAGAAAAACACACTGGAGTCCAGGCTCTTCTCTACAGCATTCCACTC  1088
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAGAAAAACACACTGGAGTCCAGGCTCTTCTCTACAGCATTCCACTC  1097

seq1  ACCATGCTATTTCCCTTACAGCCAAGAATTC  1119
      |||||||||||||||||||||||||||||||
seq2  ACCATGCTATTTCCCTTACAGCCAAGAATTC  1128