BAC Information

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BAC

Clone NameB6Ng01-198C09
Chromosome16 (Build37)
Map Location 90,710,381 - 90,711,495
singlet/doubletsinglet
Overlap genenone
Upstream geneTiam1, LOC100040496, LOC640694, LOC100040440, Sod1, Sfrs15, LOC545175, Hunk
Downstream gene2610039C10Rik, Mrap, 4921511H13Rik, 4931408A02Rik, LOC665863, 1110004E09Rik, 4930534H18Rik, Synj1, 1810007M14Rik, 4932438H23Rik, H3f3a-ps2, Olig2, Olig1, Ifnar2, Il10rb, Ifnar1, LOC665939, LOC665947, Ifngr2, Tmem50b, ORF28, Gart, Son, Donson, Cryzl1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-198C09.g
ACCGA019822
length1,108
definitionB6Ng01-198C09.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattccatgagccgattcaaaaatatcttcaagaccagcatgccacctg
ccagccagctccgactgtcaggcagcacagtgtgggcggcacttctattc
caaacctcttttctggtctcctgctctaataggcaggatatgatcaatgt
ccaccaggacagaagccctgctggggacccccacttccccaggcacggct
tctgctccaaatcagtatcagttgagtgtctcttatcggaaatgcttggg
gaaagaactgatatttcaagtatgtttagatttttttttttttgaaatat
ttgcttaataaaatgagaagcctggaggatggcagcagagaccgaacagg
aaatcaataccacttcacgcggtaatcttagccctccggcgactagcacg
tgagactggctgatggggttacggtcatgggttacgtcataactcaggaa
gttttgtgtttcagaacttagttctgttttgttttttttgtttgtttgtt
ttgttttgttttgttttgagacgaataactaaaccttcacttcattaaaa
caaatatggtggggccagagagacgccacgcaggtaaaggtgcttgccgg
caagcctgaccaccagaatttgacttcctgggacctacgtgaagagaatt
gactcctacgaattgtcctctgacatccacgagtgccctagcacgcaccc
cctacacacacatacaataattacatgtaataaaaaattaacataacatt
tttatacttttaaaaaatgaatttgaaaaggaactttgcaggtaatttga
atccaaccccacagttgaggaccccggggcaaggagacaagaggccacgg
gtatgaactccaccatcagttagagccagggcaggacccagaccacagag
ctccagggtcctctgcctcgtggggacctcacagaaccagtttgcctctg
cttaatgttggagcatatttaatccaaaatggtgtgttcagcaatggcag
cagatgcacagttcgtctcagtaccagagggttccctgctgcaaggtggg
atatatttgccacatgacactgctcatagtatgtcacctctcgaataact
ttgatccc
quality valuesOpen.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_90710381_90711495
seq2: B6Ng01-198C09.g_66_1173

seq1  GAATTCCATGAGCCGATTCAAAAATATCTTCAAGACCAGCATGCCACCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATGAGCCGATTCAAAAATATCTTCAAGACCAGCATGCCACCTG  50

seq1  CCAGCCAGCTCCGACTGTCAGGCAGCACAGTGTGGGCGGCACTTCTATTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCCAGCTCCGACTGTCAGGCAGCACAGTGTGGGCGGCACTTCTATTC  100

seq1  CAAACCTCTTTTCTGGTCTCCTGCTCTAATAGGCAGGATATGATCAATGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACCTCTTTTCTGGTCTCCTGCTCTAATAGGCAGGATATGATCAATGT  150

seq1  CCACCAGGACAGAAGCCCTGCTGGGGACCCCCACTTCCCCAGGCACGGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCAGGACAGAAGCCCTGCTGGGGACCCCCACTTCCCCAGGCACGGCT  200

seq1  TCTGCTCCAAATCAGTATCAGTTGAGTGTCTCTTATCGGAAATGCTTGGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCTCCAAATCAGTATCAGTTGAGTGTCTCTTATCGGAAATGCTTGGG  250

seq1  GAAAGAACTGATATTTCAAGTATGTTTAGATTTTTTTTTTTTTGAAATAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGAACTGATATTTCAAGTATGTTTAGATTTTTTTTTTTTTGAAATAT  300

seq1  TTGCTTAATAAAATGAGAAGCCTGGAGGATGGCAGCAGAGACCGAACAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTTAATAAAATGAGAAGCCTGGAGGATGGCAGCAGAGACCGAACAGG  350

seq1  AAATCAATACCACTTCACGCGGTAATCTTAGCCCTCCGGCGACTAGCACG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCAATACCACTTCACGCGGTAATCTTAGCCCTCCGGCGACTAGCACG  400

seq1  TGAGACTGGCTGATGGGGTTACGGTCATGGGTTACGTCATAACTCAGGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGACTGGCTGATGGGGTTACGGTCATGGGTTACGTCATAACTCAGGAA  450

seq1  GTTTTGTGTTTCAGAACTTAGTTCTGTTTTGTTTTTTTTGTTTGTTTGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTGTGTTTCAGAACTTAGTTCTGTTTTGTTTTTTTTGTTTGTTTGTT  500

seq1  TTGTTTTGTTTTGTTTTGAGACGAATAACTAAACCTTCACTTCATTAAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTTGTTTTGTTTTGAGACGAATAACTAAACCTTCACTTCATTAAAA  550

seq1  CAAATATGGTGGGGCCAGAGAGACGCCACGCAGGTAAAGGTGCTTGCCGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATATGGTGGGGCCAGAGAGACGCCACGCAGGTAAAGGTGCTTGCCGG  600

seq1  CAAGCCTGACCACCAGAATTTGACTTCCTGGGACCTACGTGAAGAGAATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCCTGACCACCAGAATTTGACTTCCTGGGACCTACGTGAAGAGAATT  650

seq1  GACTCCTACGAATTGTCCTCTGACATCCACGAGTGCCCTAGCACGCACCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCCTACGAATTGTCCTCTGACATCCACGAGTGCCCTAGCACGCACCC  700

seq1  CCTACACACACATACAATAATTACATGTAATAAAAAATTAACATAACATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACACACACATACAATAATTACATGTAATAAAAAATTAACATAACATT  750

seq1  TTTATACTTTTAAAAAATGAATTTGAAAAGGAACTTTGCAGGTAATTTGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATACTTTTAAAAAATGAATTTGAAAAGGAACTTTGCAGGTAATTTGA  800

seq1  ATCCAACCCCACAGTTGAGGACCCCGGGGCAAGGAGACAAGAGGCCACGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAACCCCACAGTTGAGGACCCCGGGGCAAGGAGACAAGAGGCCACGG  850

seq1  GTATGAACTCCACCATCAGTTAGAGCCAGGGCAGGACCCAGACCACAGAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGAACTCCACCATCAGTTAGAGCCAGGGCAGGACCCAGACCACAGAG  900

seq1  CTCCAGGGTCCTCTGCCTCGT-GGGACCTCACAGAACCAGTTTTGCCTCT  949
      ||||||||||||||||||||| |||||||||||||||||| |||||||||
seq2  CTCCAGGGTCCTCTGCCTCGTGGGGACCTCACAGAACCAG-TTTGCCTCT  949

seq1  GCTTAAATGTT-GAGCATAATTTAATCCAAATGTGTGT-TTCAGCAAATG  997
      |||| |||||| |||||| ||||||||||||   |||| |||||| ||||
seq2  GCTT-AATGTTGGAGCAT-ATTTAATCCAAAATGGTGTGTTCAGC-AATG  996

seq1  GCAGCAGAAGGCACAGTCCGTTCTCAGTACCCAGAGGG-TCCCTGCTGCA  1046
      ||||||| | ||||||| || |||||||| |||||||| |||||||||||
seq2  GCAGCAG-ATGCACAGTTCG-TCTCAGTA-CCAGAGGGTTCCCTGCTGCA  1043

seq1  AAGTGGGATTATATTTTGCACATGACACCTGCTCATAGTTTATGTCACCT  1096
      | |||||| |||||||  ||||||||| ||||||||||  ||||||||||
seq2  AGGTGGGA-TATATTTGCCACATGACA-CTGCTCATAG--TATGTCACCT  1089

seq1  CTCGATTACTTTTGATCCC  1115
      ||||| ||  |||||||||
seq2  CTCGAATAACTTTGATCCC  1108