BAC Information

Click to search

BAC

Clone NameB6Ng01-198L16
Chromosome16 (Build37)
Map Location 75,234,848 - 75,388,539
singlet/doubletdoublet
Overlap genenone
Upstream geneRobo2, LOC665042
Downstream geneD930038D03Rik, Rbm11, Stch, LOC546667, Samsn1, 4930578N18Rik, LOC100039457, Nrip1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-198L16.bB6Ng01-198L16.g
ACCGA020252GA020253
length1,038960
definitionB6Ng01-198L16.b B6Ng01-198L16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(75,234,848 - 75,235,882)(75,387,585 - 75,388,539)
sequence
gaattccaggagaatacaatctaaaacaggcagggatataattgaaaata
cagtgaataaggccaggaaagccgtagaaacaggtggatagttggacagg
gatttctcataaaatacaagtagatgagtgtctaaaaaggaaaccaacta
cttgtactcaaataagaacacattaatagattcaagtaaaattgttgctt
ggtgatattgagagtcctgttattgtgggtaggtgggaacttgacagaac
actattaaaaactaaatctgtctaggctaaaaatgatctatgtccataca
aatatcattttgtattcttttgagaaattttgttataaaaggaagcaaaa
gaatggaagaatgtataagaaggacagattcctttctttctcggcttgat
tacatggacacatactgcaagacacaagcctgatagataatttatccata
aagtcatctaaaatcagccacagcttagaaaggtaggaaataaaaaaaaa
aatcaatgttcctcatgtgattgataggtaatgcggtaggctgtacatct
ggaagagttgtctttggtctgtatggtggcactgtgtccccagaaggtag
gatgttgtggatttagcctaccttgtgggtggtgcatgcatattttataa
gtaacttctggtttttcaataaagtacaaagaaagattatgaaatattag
ataatacaaaaaatcatcgacagattcaacacaatccctaccaaaatcct
cacagcattcattcccagaactagcagagaaatcctaagattcatacaaa
tgcagaaaaaaaatccgagtagtgcaaataatgcaataaaactaggagga
ctagagctatcataaaccatactaactgaagtaacatggaacagggagaa
aaaacagacacatacatcaacagaacaggaatagaaagtcacagaaatat
attacacagcttcattccctttggtttgcccaaagaggtcatagcattaa
atggaaaaagtaggggcaggtttatttaaacgatcgtg
gaattcacagtgctacataaggtcatgattttatgtaaccacaggctact
ggggtagatcagaaagtcattttattaccagaatacagtgtattttatga
agaccaaagcaaaggttcagtgaattatgtaaggtgatcaaaacacaata
aataataggccctaccacttagtcaatgtgaaaaatcactgtgtgaaaaa
tatataaaaaactgaaaataatgggcttaaataaatatttctagcccaga
gcttaaaaagaaaaaccatgtttgggagtgctcttattaccagtatgatg
caagtaaatatatcataaacccattgttttgagtagtaactgtgcttgag
gagttgtataggggtcagtgacatggctcactgggtactgtatcaatgac
tttgtgtagatatgataaaaataccatttccaaaacaattaacagaatac
atagtctatttcagttgaggatttcagaagaagagctcaaaataacagta
caggcctgggaacagatggtgacacaggtgactaagaaatcatagcttca
accacacacatgaaataaatagtgactggaaatttagtgagtctgtggac
tctcaaagtcagccatcctgtgatctgtgtcctccagaaaggcttcttgt
tttaagaggtctgtaatctctttaaataatgccagccaccaagaaccaag
agggactaaatcttcagtacatgagcctatgggaactattttttactcca
ccacatactcagtgattataataatcaatcattttcctggtgggatcgca
ttgagatctgttgagttcaaatcaatacctttagtgtacaaaataggtca
acaagcatgagtaatttgtgtactggtaacttaggattttaaagattcaa
cacattttttgaatttttattctaaaggtgcagctggtagtactcactga
catttcaact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_75234848_75235882
seq2: B6Ng01-198L16.b_45_1082

seq1  GAATTCCAGGAGAATACAATCTAAAACAGGCAGGGATATAATTGAAAATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGAGAATACAATCTAAAACAGGCAGGGATATAATTGAAAATA  50

seq1  CAGTGAATAAGGCCAGGAAAGCCGTAGAAACAGGTGGATAGTTGGACAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGAATAAGGCCAGGAAAGCCGTAGAAACAGGTGGATAGTTGGACAGG  100

seq1  GATTTCTCATAAAATACAAGTAGATGAGTGTCTAAAAAGGAAACCAACTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTCTCATAAAATACAAGTAGATGAGTGTCTAAAAAGGAAACCAACTA  150

seq1  CTTGTACTCAAATAAGAACACATTAGTAGATTCAAGTAAAATTGTTGCTT  200
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  CTTGTACTCAAATAAGAACACATTAATAGATTCAAGTAAAATTGTTGCTT  200

seq1  GGTGATATTGAGAGTCCTGTTATTGTGGGTAGGTGGGAACTTGACAGAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGATATTGAGAGTCCTGTTATTGTGGGTAGGTGGGAACTTGACAGAAC  250

seq1  ACTATTAAAAACTAAATCTGTCTAGGCTAAGAATGATCTATGTCCATACA  300
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  ACTATTAAAAACTAAATCTGTCTAGGCTAAAAATGATCTATGTCCATACA  300

seq1  AATATCATTTTGTATTCTTTTGAGAAATTTTGTTATAAAAGGAAGCAAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATCATTTTGTATTCTTTTGAGAAATTTTGTTATAAAAGGAAGCAAAA  350

seq1  GAATGGAAGAATGTATAAGAAGGACAGATTCCTTTCTTTCTCGGCTTGAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGGAAGAATGTATAAGAAGGACAGATTCCTTTCTTTCTCGGCTTGAT  400

seq1  TACATGGACACATACTGCAAGACACAAGCCTGATAGATAATTTATCCATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATGGACACATACTGCAAGACACAAGCCTGATAGATAATTTATCCATA  450

seq1  AAGTCATCTAAAATCAGCCACAGCTTAGAAAGGTAGGAAATAAAAAAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCATCTAAAATCAGCCACAGCTTAGAAAGGTAGGAAATAAAAAAAAA  500

seq1  AATCAATGTTCCTCATGTGATTGATAGGTAATGCGGTAGGCTGTACATCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAATGTTCCTCATGTGATTGATAGGTAATGCGGTAGGCTGTACATCT  550

seq1  GGAAGAGTTGTCTTTGGTCTGTATGGTGGCACTGTGTCCCCAGAAGGTAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGAGTTGTCTTTGGTCTGTATGGTGGCACTGTGTCCCCAGAAGGTAG  600

seq1  GATGTTGTGGATTTAGCCTACCTTGTGGGTGGTGCATGCATATTTTATAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTTGTGGATTTAGCCTACCTTGTGGGTGGTGCATGCATATTTTATAA  650

seq1  GTAACTTCTGGTTTTTCAATAAAGTACAAAGAAAGATTATGAAATATTAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACTTCTGGTTTTTCAATAAAGTACAAAGAAAGATTATGAAATATTAG  700

seq1  ATAATACAAAAAATCATCGACAGATTCAACACAATCCCTACCAAAATCCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATACAAAAAATCATCGACAGATTCAACACAATCCCTACCAAAATCCT  750

seq1  AACAGCATTCA-TCCCAGAACTAGCAGAGAAATCCTAAGATTCATACAAA  799
       |||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  CACAGCATTCATTCCCAGAACTAGCAGAGAAATCCTAAGATTCATACAAA  800

seq1  AGCAGAAAAAAAATCCGAGTAGTGAAAATAATGCAAGAAAACTAGGAGGG  849
       ||||||||||||||||||||||| ||||||||||| |||||||||||| 
seq2  TGCAGAAAAAAAATCCGAGTAGTGCAAATAATGCAATAAAACTAGGAGGA  850

seq1  CTAGAGCTATCATAAACCATACTAACTGAAGTAACATGGTACAGGGAGAA  899
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  CTAGAGCTATCATAAACCATACTAACTGAAGTAACATGGAACAGGGAGAA  900

seq1  AAAACAGACACAAACATCAACAGAACAGG-ATAGAAAGTCCCAGAAATAT  948
      |||||||||||| |||||||||||||||| |||||||||| |||||||||
seq2  AAAACAGACACATACATCAACAGAACAGGAATAGAAAGTCACAGAAATAT  950

seq1  ATTACACAGCTTCAATTCCCTTT-GTTTGCACAAAGAGTTCAAAGCATTA  997
      ||||||||||||| ||||||||| |||||| ||||||| ||| |||||||
seq2  ATTACACAGCTTC-ATTCCCTTTGGTTTGCCCAAAGAGGTCATAGCATTA  999

seq1  AAT-GAAAAAGTAAGGGGCAGGTTT-TTCAAACGATCGTG  1035
      ||| |||||||| |||||||||||| || |||||||||||
seq2  AATGGAAAAAGT-AGGGGCAGGTTTATTTAAACGATCGTG  1038

seq1: chr16_75387585_75388539
seq2: B6Ng01-198L16.g_66_1025 (reverse)

seq1  AGTTGAAAATTTAGTGAGTACTACCAGTTGCA-CTTTAGATTAAAAAT--  47
      ||||||||  | ||||||||||||||| |||| ||||||| |||||||  
seq2  AGTTGAAATGTCAGTGAGTACTACCAGCTGCACCTTTAGAATAAAAATTC  50

seq1  AAAAAATGTGTTAAACTTTTAAAATACTAAG-TAACAGTACACAAATTAC  96
      |||||||||||| ||  |||||||| ||||| || |||||||||||||||
seq2  AAAAAATGTGTTGAATCTTTAAAATCCTAAGTTACCAGTACACAAATTAC  100

seq1  TAATGCTTGTTGACCTATTTTGTACACTAAAGGTATTGATTTGAAATCAA  146
      | ||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  TCATGCTTGTTGACCTATTTTGTACACTAAAGGTATTGATTTGAACTCAA  150

seq1  -AGATCTCAATGCAATCCCACCAGG-AAATAATTGATTATTATAATCAAT  194
       |||||||||||| ||||||||||| |||| ||||||||||||||||| |
seq2  CAGATCTCAATGCGATCCCACCAGGAAAATGATTGATTATTATAATCACT  200

seq1  GAGTATGTGGTTTGAGTAAAAAATAGTTCCCATAGGCTCATGTACTGAAG  244
      |||||||||| | |||||||||||||||||||||||||||||||||||||
seq2  GAGTATGTGG-TGGAGTAAAAAATAGTTCCCATAGGCTCATGTACTGAAG  249

seq1  ATTTAGTCCCTCTTGGTTCTTGGTGGCTGGCATTATTTAAAGAGATTACA  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAGTCCCTCTTGGTTCTTGGTGGCTGGCATTATTTAAAGAGATTACA  299

seq1  GACCTTTTAAAACAAGAAGCCTTTCTGGAGGACACAGATCACAGGATGGC  344
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTCTTAAAACAAGAAGCCTTTCTGGAGGACACAGATCACAGGATGGC  349

seq1  TGACTTTGAGAGTCCACAGACTCACTAAATTTCCAGTCACTATTTATTTC  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTTTGAGAGTCCACAGACTCACTAAATTTCCAGTCACTATTTATTTC  399

seq1  ATGTGTGTGGTTGAAGCTATGATTTCTTAGTCACCTGTGTCACCATCTGT  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTGTGGTTGAAGCTATGATTTCTTAGTCACCTGTGTCACCATCTGT  449

seq1  TCCCAGGCCTGTACTGCTATTTTGAGCTCTTCTTCTGAAATCCTCAACTG  494
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  TCCCAGGCCTGTACTGTTATTTTGAGCTCTTCTTCTGAAATCCTCAACTG  499

seq1  AAATAGACTATGTATTCTGTTAATTGTTTTGGAAATGGTATTTTTATCAT  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAGACTATGTATTCTGTTAATTGTTTTGGAAATGGTATTTTTATCAT  549

seq1  ATCTACACAAAGTCACTGATACAGTACCCACTGAGCCATGTCACTGACCC  594
      ||||||||||||||| |||||||||||||| |||||||||||||||||||
seq2  ATCTACACAAAGTCATTGATACAGTACCCAGTGAGCCATGTCACTGACCC  599

seq1  CTATACAACTCCTCAAGCACAGTTACTACTCAAAACAATGGGTTTATGAT  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATACAACTCCTCAAGCACAGTTACTACTCAAAACAATGGGTTTATGAT  649

seq1  ATATTTACTTGCATCATACTGGTAATAAGAGCACTACCAAACATGGTTTT  694
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  ATATTTACTTGCATCATACTGGTAATAAGAGCACTCCCAAACATGGTTTT  699

seq1  TCTTTTTAAGCTCTGGGCTAGAAATATTTATTTAAGCCCATTATTTTCAG  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTTAAGCTCTGGGCTAGAAATATTTATTTAAGCCCATTATTTTCAG  749

seq1  TTTTTTATATATTTTTCACACAGTGATTTTTCACATTGACTAAGTGGTAG  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTATATATTTTTCACACAGTGATTTTTCACATTGACTAAGTGGTAG  799

seq1  GGCCTATTATTTATTGTGTTTTGATCACCTTACATAATTCACTGAACCTT  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTATTATTTATTGTGTTTTGATCACCTTACATAATTCACTGAACCTT  849

seq1  TGCTTTGGTCTTCATAAAATACACTGTATTCTGGTAATAAAATGACTTTC  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTGGTCTTCATAAAATACACTGTATTCTGGTAATAAAATGACTTTC  899

seq1  TGATCTACCCCAGTAGCCTGTGGTTACATAAAATCATGACCTTATGTAGC  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCTACCCCAGTAGCCTGTGGTTACATAAAATCATGACCTTATGTAGC  949

seq1  ACTGTGAATTC  955
      |||||||||||
seq2  ACTGTGAATTC  960