BAC Information

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BAC

Clone NameB6Ng01-199G16
Chromosome16 (Build37)
Map Location 41,114,899 - 41,209,340
singlet/doubletdoublet
Overlap genenone
Upstream genenone
Downstream geneEG667450, Lsamp
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-199G16.bB6Ng01-199G16.g
ACCGA020756GA020757
length1,1161,127
definitionB6Ng01-199G16.b B6Ng01-199G16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(41,114,899 - 41,116,029)(41,208,231 - 41,209,340)
sequence
gaattcttacaaatgtagttgctcattaaagaaggtagtctttcttagag
cactgggatattttgaaagatgcactttattgagccctgatttcttcttt
tcctactgaaaataaaaaaaaaaaaatctcaggactatagccctatcagt
tggttaggttgaagaacactagactgactttcaaatcttacttgtcatga
gaaagttatttcctaccaacttttcaaagtcagttgcaatgaccggtctc
cacctattttcttttccagggagattacctgtggaaatccaatacaaaac
tttaaacaaacatctgagaaacctattattcctggctaagcactgacatc
atattttagattgtttgatataagaattacttacatttttttctctgagt
atccactgaaaatttgaacaagaatttcatggcctctgggtaaataagaa
aggtaatttgtgtcaatacttcccaagattctttctgaccatttgacacc
atggacttatggaaaataccctattacatgatgtaagcctttgtaattgg
atcaaatggtgctatttcatagattagaaatttgaaatgaaataatgact
tagtttaatataggtaccatttatttgaattatttcattatgaaataatg
aagggcaagttgaacaattatttatattttattactattgttttatgtat
atttgtattttgcttatatgtctatgcaccacatgactgtaaaggctaaa
ataaggtaatagagcccatgggcccagagcacaatctgtagtgagcaaaa
tatgggtattgagaaccaaccaagatccttagaatagcagcctgtactat
ttaaccattggtctatctctccagaactcagactttattttcaaggatac
agacaggaacgtatgaataactgtctttccctaaatgttccctgaccatt
tggctggatctcagcatcccatgtgtgtgattgttcttaagccatttttt
tttttaatcccagtatcgtcttggggtatctgtaataataaatgattata
tgtggatcacattactgccattcgttgaaccaacactacaaaaaaataaa
gttttccatgacatat

gaattcttttataagtgtttgggtttctctattgtgtcttttctgctttc
atgttttgctcatgaagttgtctgcccagtgtgcctttcaactacctctc
aaaaattagtttctcttcttcaatactatcttactggtaatatttttaat
agttttccacatttttctttaagtgtcccatcccattttgcttatactta
gcttataggtatgtatgtattctccattgtgttctgtggatagggagcca
ggcttatctataccatgatactaagggtattaggagtaaggcctttattt
tcttcttctatctattatatttagcatagctcctaataataaagacatta
taattacataagtgctgtattagctattcaagataaaaagatatgaaaca
aaaatgactcttcaatgtataatgccatataactgtgtaaagagaaatga
taaccatatttgattgcttaaaacaattgaaataatattcaccattgatc
attttattagtctgtcttcaatgtatgcatacatgattatacttgtgcat
gctatgcatagacagaaacttgtcccgttcttatttggagacatcttgta
tttgggttatctaaaattcatggctctaaattatactcaagactacatta
ttatagaagtttgcattcacttataaaattagatgcaaaaatatggtaat
gtatcattaagactgagttataattattcacaagccagacaactgtatta
agctcccaattcaatcatgataccatgatttgaaaaaagaagtacttttt
cctcaaatatcaatggaaatatataccttaaatttgtttccttgaggtat
aaaatgtctaactataaaataaacgtaagatagaagtgagaaacaaagag
ggaagtgaaaaatcaaaagtctagagaaggttcatcatttttaaataaat
taaaaaacttaaagaaaaaaaatttattgtagcctgatgaaaagtcttgt
tagcatgtaaaatagcccttaaagtttccaatattgtaacaagttaatac
ttgagtaaaaacattcctgagataaaataaatttggagaacttgcccttg
accttagctatggaaggttgctatagc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_41114899_41116029
seq2: B6Ng01-199G16.b_44_1159

seq1  GAATTCTTACAAATGTAGTTGCTCATTAAAGAAGGTAGTCTTTCTTAGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTACAAATGTAGTTGCTCATTAAAGAAGGTAGTCTTTCTTAGAG  50

seq1  CACTGGGATATTTTGAAAGATGCACTTTATTGAGCCCTGATTTCTTCTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGGGATATTTTGAAAGATGCACTTTATTGAGCCCTGATTTCTTCTTT  100

seq1  TCCTACTGAAAATAAAAAAAAAAAAATCTCAGGACTATAGCCCTATCAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTACTGAAAATAAAAAAAAAAAAATCTCAGGACTATAGCCCTATCAGT  150

seq1  TGGTTAGGTTGAAGAACACTAGACTGACTTTCAAATCTTACTTGTCATGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTAGGTTGAAGAACACTAGACTGACTTTCAAATCTTACTTGTCATGA  200

seq1  GAAAGTTATTTCCTACCAACTTTTCAAAGTCAGTTGCAATGACCGGTCTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGTTATTTCCTACCAACTTTTCAAAGTCAGTTGCAATGACCGGTCTC  250

seq1  CACCTATTTTCTTTTCCAGGGAGATTACCTGTGGAAATCCAATACAAAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTATTTTCTTTTCCAGGGAGATTACCTGTGGAAATCCAATACAAAAC  300

seq1  TTTAAACAAACATCTGAGAAACCTATTATTCCTGGCTAAGCACTGACATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAACAAACATCTGAGAAACCTATTATTCCTGGCTAAGCACTGACATC  350

seq1  ATATTTTAGATTGTTTGATATAAGAATTACTTACATTTTTTTCTCTGAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTTAGATTGTTTGATATAAGAATTACTTACATTTTTTTCTCTGAGT  400

seq1  ATCCACTGAAAATTTGAACAAGAATTTCATGGCCTCTGGGTAAATAAGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCACTGAAAATTTGAACAAGAATTTCATGGCCTCTGGGTAAATAAGAA  450

seq1  AGGTAATTTGTGTCAATACTTCCCAAGATTCTTTCTGACCATTTGACACC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTAATTTGTGTCAATACTTCCCAAGATTCTTTCTGACCATTTGACACC  500

seq1  ATGGACTTATGGAAAATACCCTATTACATGATGTAAGCCTTTGTAATTGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGACTTATGGAAAATACCCTATTACATGATGTAAGCCTTTGTAATTGG  550

seq1  ATCAAATGGTGCTATTTCATAGATTAGAAATTTGAAATGAAATAATGACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAATGGTGCTATTTCATAGATTAGAAATTTGAAATGAAATAATGACT  600

seq1  TAGTTTAATATAGGTACCATTTATTTGAATTATTTCATTATGAAATAATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTTAATATAGGTACCATTTATTTGAATTATTTCATTATGAAATAATG  650

seq1  AAGGGCAAGTTGAACAATTATTTATATTTTATTACTATTGTTTTATGTAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGCAAGTTGAACAATTATTTATATTTTATTACTATTGTTTTATGTAT  700

seq1  ATTTGTATTTTGCTTATATGTCTATGCACCACATGACTGTAAAGGCTAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGTATTTTGCTTATATGTCTATGCACCACATGACTGTAAAGGCTAAA  750

seq1  ATAAGGTAATAGAGCCCATGGGCCCAGAGCACAATCTGTAGTGAGCAAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGGTAATAGAGCCCATGGGCCCAGAGCACAATCTGTAGTGAGCAAAA  800

seq1  TATGGGTATTGAGAACCAACCAAGATCCTTAGAATAGCAGCCTGTACTA-  849
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  TATGGGTATTGAGAACCAACCAAGATCCTTAGAATAGCAGCCTGTACTAT  850

seq1  TTAACCATTGGTCTATCTCTCCAGAACTCAGACTTTAATTTTCAAGGATA  899
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  TTAACCATTGGTCTATCTCTCCAGAACTCAGACTTT-ATTTTCAAGGATA  899

seq1  CAGACAGGAACGTATGAATAACTGTCTTTCCCTAAATGTTCCCTGACCAT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACAGGAACGTATGAATAACTGTCTTTCCCTAAATGTTCCCTGACCAT  949

seq1  TTGGCTGGATCTCAGCATCCCATGTGTGTGATTGTTCTTAAGCCATTTTT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCTGGATCTCAGCATCCCATGTGTGTGATTGTTCTTAAGCCATTTTT  999

seq1  TTTTTTAAATCCCAGTATCCGTCTTTGAGTATTCTGTAAT-ATAAATGAT  1048
      |||||| ||||||||||| |||||| | ||| |||||||| |||||||||
seq2  TTTTTT-AATCCCAGTAT-CGTCTTGGGGTA-TCTGTAATAATAAATGAT  1046

seq1  TATATTGTGGATTCAAGGATTACTGCCATTTCCTTTGAAACAACAACTAC  1098
      |||| |||||| |||   ||||||||||||  | ||||| |||| |||||
seq2  TATA-TGTGGA-TCA--CATTACTGCCATT--CGTTGAACCAAC-ACTAC  1089

seq1  AAAAAAAAAAAAAAAAAGTTTTCCATGACATAT  1131
            ||||||| |||||||||||||||||||
seq2  ------AAAAAAATAAAGTTTTCCATGACATAT  1116


seq1: chr16_41208231_41209340
seq2: B6Ng01-199G16.g_65_1191 (reverse)

seq1  GCTATAGCAAC--TTCATAGCTAAAGGGTCCA-GGCAAG-TCT-CAAATT  45
      |||||||||||  | |||||||||  |||| | |||||| ||| ||||||
seq2  GCTATAGCAACCTTCCATAGCTAA--GGTCAAGGGCAAGTTCTCCAAATT  48

seq1  --ATTTATCTCAGG-ATGTTTTTCCTCAGTTATTAACTTGTTACATTATT  92
         ||||||||||| |||||||| ||||  ||||||||||||||| ||||
seq2  TATTTTATCTCAGGAATGTTTTTACTCAAGTATTAACTTGTTACAATATT  98

seq1  -GAAACTT--AAGGCTATTTTACATGCTAAC-AGACTTTTCATCA-GCTA  137
       |||||||  | ||||||||||||||||||| ||||||||||||| ||||
seq2  GGAAACTTTAAGGGCTATTTTACATGCTAACAAGACTTTTCATCAGGCTA  148

seq1  C-ATAA--TTTTTTTCTTTAAGTTTTTTAA-TTATTT-AAAATGATGAAC  182
      | ||||  |||||||||||||||||||||| |||||| ||||||||||||
seq2  CAATAAATTTTTTTTCTTTAAGTTTTTTAATTTATTTAAAAATGATGAAC  198

seq1  CTTCTCTAGAC-TTTGATTTTTCACTTCCCTCTTTGTTTCTCACTTCTAT  231
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  CTTCTCTAGACTTTTGATTTTTCACTTCCCTCTTTGTTTCTCACTTCTAT  248

seq1  CTTACGTTTATTTTATAGTTAGACATTTTATACCTCAAGGAAACAAATTT  281
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACGTTTATTTTATAGTTAGACATTTTATACCTCAAGGAAACAAATTT  298

seq1  AAGGTATATATTTCCATTGATATTTGAGGAAAAAGTACTTCTTTTTTCAA  331
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTATATATTTCCATTGATATTTGAGGAAAAAGTACTTCTTTTTTCAA  348

seq1  ATCATGGTATCATGATTGAATTGGGAGCTTAATACAGTTGTCTGGCTTGT  381
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATGGTATCATGATTGAATTGGGAGCTTAATACAGTTGTCTGGCTTGT  398

seq1  GAATAATTATAACTCAGTCTTAATGATACATTACCATATTTTTGCATCTA  431
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAATTATAACTCAGTCTTAATGATACATTACCATATTTTTGCATCTA  448

seq1  ATTTTATAAGTGAATGCAAACTTCTATAATAATGTAGTCTTGAGTATAAT  481
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTATAAGTGAATGCAAACTTCTATAATAATGTAGTCTTGAGTATAAT  498

seq1  TTAGAGCCATGAATTTTAGATAACCCAAATACAAGATGTCTCCAAATAAG  531
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAGCCATGAATTTTAGATAACCCAAATACAAGATGTCTCCAAATAAG  548

seq1  AACGGGACAAGTTTCTGTCTATGCATAGCATGCACAAGTATAATCATGTA  581
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGGGACAAGTTTCTGTCTATGCATAGCATGCACAAGTATAATCATGTA  598

seq1  TGCATACATTGAAGACAGACTAATAAAATGATCAATGGTGAATATTATTT  631
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATACATTGAAGACAGACTAATAAAATGATCAATGGTGAATATTATTT  648

seq1  CAATTGTTTTAAGCAATCAAATATGGTTATCATTTCTCTTTACACAGTTA  681
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTGTTTTAAGCAATCAAATATGGTTATCATTTCTCTTTACACAGTTA  698

seq1  TATGGCATTATACATTGAAGAGTCATTTTTGTTTCATATCTTTTTATCTT  731
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGCATTATACATTGAAGAGTCATTTTTGTTTCATATCTTTTTATCTT  748

seq1  GAATAGCTAATACAGCACTTATGTAATTATAATGTCTTTATTATTAGGAG  781
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAGCTAATACAGCACTTATGTAATTATAATGTCTTTATTATTAGGAG  798

seq1  CTATGCTAAATATAATAGATAGAAGAAGAAAATAAAGGCCTTACTCCTAA  831
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGCTAAATATAATAGATAGAAGAAGAAAATAAAGGCCTTACTCCTAA  848

seq1  TACCCTTAGTATCATGGTATAGATAAGCCTGGCTCCCTATCCACAGAACA  881
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCTTAGTATCATGGTATAGATAAGCCTGGCTCCCTATCCACAGAACA  898

seq1  CAATGGAGAATACATACATACCTATAAGCTAAGTATAAGCAAAATGGGAT  931
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGGAGAATACATACATACCTATAAGCTAAGTATAAGCAAAATGGGAT  948

seq1  GGGACACTTAAAGAAAAATGTGGAAAACTATTAAAAATATTACCAGTAAG  981
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACACTTAAAGAAAAATGTGGAAAACTATTAAAAATATTACCAGTAAG  998

seq1  ATAGTATTGAAGAAGAGAAACTAATTTTTGAGAGGTAGTTGAAAGGCACA  1031
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTATTGAAGAAGAGAAACTAATTTTTGAGAGGTAGTTGAAAGGCACA  1048

seq1  CTGGGCAGACAACTTCATGAGCAAAACATGAAAGCAGAAAAGACACAATA  1081
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGCAGACAACTTCATGAGCAAAACATGAAAGCAGAAAAGACACAATA  1098

seq1  GAGAAACCCAAACACTTATAAAAGAATTC  1110
      |||||||||||||||||||||||||||||
seq2  GAGAAACCCAAACACTTATAAAAGAATTC  1127


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