BAC Information

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BAC

Clone NameB6Ng01-200G14
Chromosome16 (Build37)
Map Location 66,000,630 - 66,001,710
singlet/doubletsinglet
Overlap genenone
Upstream geneHtr1f, LOC668247, LOC672931, Pou1f1, Chmp2b, EG383186, Vgll3, LOC664846
Downstream geneLOC100039035, Cadm2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-200G14.bB6Ng01-200G14.g
ACCGA021480GA021481
length1,2381,090
definitionB6Ng01-200G14.b B6Ng01-200G14.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattccttggccaggtatctatcactcaagaaacagttttcacactgtt
ttctttgttattgtttctttgtctaaatttctagttttttaaagaagcta
tgtttgttattggtatacctattaaccactctttaacatgactgcctttt
taaatactgtatttacaaataaagtcccacattggacatgaaaagcaact
atttgggaaggaggtacaaataaaatctcaaggtgcatgggtcctgccag
ggaagagatggtctccagtgagtgctcagactcccaggcttagaggtgag
atcatgatttttctctccagtgactgtataaggcagtacaatcctagcac
acacagggctcaggagctgttgaaaagataggacagtgtccttctggcct
ccacctgcactcaggagctggggatgatctgcttccctctgtgcatgggt
acttccaggggagagttggcctctcaggagtgctgacacagacttagagg
tccacaggagggacaagctcaagacagagacagcaagaacacaattaaca
ccagagataactagatggaaaaaggcaagcacaagaactttaccaacaga
aaccaaggctcatccaaacccagttctcccacaacagcaagtcctggata
ccccaacacaccggaaaagcaagatttggttttaaaaatagtatctcatg
atgcagatagaggactttaagaggggcataaataactcccttaaagaaat
acaggagaacacagttaaacagcttagaagcccttcaagaagaaacacta
aaatcccttaaagaattataggaaaaacaaaaccaaacaggtaagggaat
tgaacaaaccatccagcattcttaaaagtgcaaatagaaaaaatacagaa
atcacaaagggaagtcaacgctggtagatagaaaaccctaggaaaggata
tcaggagacatagatgtgagcatcatcatagaataccaagagatagaaga
gggcagtttcaggtgcagaagaattctcatagaaaaacattttccatcac
caatcaagagaaaatgccaatttcaaaaagaatccctaacctcataaaaa
ttccaggaaatctggcacactattggaaaaagaccaacccttaaggatta
gttaggattatcgacagagaaagtgacgattcctaacctgtaaggggttc
cagggtacagtatactcttctgcaacacatcaatctat
gaattcatgtttcttagcttctataatttaaaaataaataaataaaataa
aaccaatcccgttgtctactgtggggatttttatgctgagaaagtgaact
acaatttacaactgaagaaactcgaacttccatgaattcaaggcaaacat
ttcttgtttgaggagcttatttttaagcacttaaatacttcaaaatataa
cctagttgatgattttcataaactcatcttccgaggttttctcttgaccc
aggttttgtctatcaaagtaatattaattggatttcatcttttcctttca
tgacaacacaaggtgatcagtccacctgtctgaatatctatctacctttc
aggagactgtgcatcaaagagtgtacaataactcaagggaatgagctaag
taacagatgaagctgtctgcaggaccggggtcctttcatggttgcagtat
ttcatacaatttcgttggcaaattgcctaccagatgggctacagcccagg
agggaggtttactgctctactccccagaatggtgtcccctcgcattttct
cccctttaggtttgaatgtcagttgcttgcagaggggaaaagaaagggct
cgcacttgggattcttgagtgactgccagaaaagaattgtctctgagaat
tgccattttccaggttcccatagtatgcagtaaacccaattatccaagct
aagggttagaaaccggaaacaggggtgggggcatcttataactatcaaca
tggatatcttctgagaggcagcaataaaaggatctattacacttcagttg
ttaaacttaagatacactattgatattcataaaataatttgcagatcgct
gcagtcactcagagtctaggccacaagatactgacaattttcctgtattg
gtcacaggttattgcttaaaggtcttttttactactgagattaggtcaag
ggttttagaaagtgtgggaacactagacaaacatccactgctcattactt
ttcgacgtccattagctgcttaatgggttttcaagtcctgggaaactatg
aaaaaaagtggcatggtacattttatatgaaacttaaatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_66000630_66001710
seq2: B6Ng01-200G14.g_69_1158

seq1  GAATTCATGTTTCTTAGCTTCTATAATTTAAAAATAAATAAATAAAATAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGTTTCTTAGCTTCTATAATTTAAAAATAAATAAATAAAATAA  50

seq1  AACCAATCCCGTTGTCTACTGTGGGGATTTTTATGCTGAGAAAGTGAACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAATCCCGTTGTCTACTGTGGGGATTTTTATGCTGAGAAAGTGAACT  100

seq1  ACAATTTACAACTGAAGAAACTCGAACTTCCATGAATTCAAGGCAAACAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATTTACAACTGAAGAAACTCGAACTTCCATGAATTCAAGGCAAACAT  150

seq1  TTCTTGTTTGAGGAGCTTATTTTTAAGCACTTAAATACTTCAAAATATAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTGTTTGAGGAGCTTATTTTTAAGCACTTAAATACTTCAAAATATAA  200

seq1  CCTAGTTGATGATTTTCATAAACTCATCTTCCGAGGTTTTCTCTTGACCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGTTGATGATTTTCATAAACTCATCTTCCGAGGTTTTCTCTTGACCC  250

seq1  AGGTTTTGTCTATCAAAGTAATATTAATTGGATTTCATCTTTTCCTTTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTTTGTCTATCAAAGTAATATTAATTGGATTTCATCTTTTCCTTTCA  300

seq1  TGACAACACAAGGTGATCAGTCCACCTGTCTGAATATCTATCTACCTTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAACACAAGGTGATCAGTCCACCTGTCTGAATATCTATCTACCTTTC  350

seq1  AGGAGACTGTGCATCAAAGAGTGTACAATAACTCAAGGGAATGAGCTAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGACTGTGCATCAAAGAGTGTACAATAACTCAAGGGAATGAGCTAAG  400

seq1  TAACAGATGAAGCTGTCTGCAGGACCGGGGTCCTTTCATGGTTGCAGTAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAGATGAAGCTGTCTGCAGGACCGGGGTCCTTTCATGGTTGCAGTAT  450

seq1  TTCATACAATTTCGTTGGCAAATTGCCTACCAGATGGGCTACAGCCCAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATACAATTTCGTTGGCAAATTGCCTACCAGATGGGCTACAGCCCAGG  500

seq1  AGGGAGGTTTACTGCTCTACTCCCCAGAATGGTGTCCCCTCGCATTTTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAGGTTTACTGCTCTACTCCCCAGAATGGTGTCCCCTCGCATTTTCT  550

seq1  CCCCTTTAGGTTTGAATGTCAGTTGCTTGCAGAGGGGAAAAGAAAGGGCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTTTAGGTTTGAATGTCAGTTGCTTGCAGAGGGGAAAAGAAAGGGCT  600

seq1  CGCACTTGGGATTCTTGAGTGACTGCCAGAAAAGAATTGTCTCTGAGAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCACTTGGGATTCTTGAGTGACTGCCAGAAAAGAATTGTCTCTGAGAAT  650

seq1  TGCCATTTTCCAGGTTCCCATAGTATGCAGTAAACCCAATTATCCAAGCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCATTTTCCAGGTTCCCATAGTATGCAGTAAACCCAATTATCCAAGCT  700

seq1  AAGGGTTAGAAACCGGAAACAGGGGTGGGGGCATCTTATAACTATCAACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGTTAGAAACCGGAAACAGGGGTGGGGGCATCTTATAACTATCAACA  750

seq1  TGGATATCTTCTGAGAGGCAGCAATAAAAGGATCTATTACACTTCAGTTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATATCTTCTGAGAGGCAGCAATAAAAGGATCTATTACACTTCAGTTG  800

seq1  TTAAACTTAAGATACACTATTGATATTCATAAAATAA-TTGCAGATCGCT  849
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  TTAAACTTAAGATACACTATTGATATTCATAAAATAATTTGCAGATCGCT  850

seq1  GCAGTCACTCAGAGTCTAGGCCACAAGATACTGACAATTTTCCTGTATTG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTCACTCAGAGTCTAGGCCACAAGATACTGACAATTTTCCTGTATTG  900

seq1  GTCACAGGTATTTGCTT-AAGGTC-TTTTTACTACTGAGATTAGGTCAAG  947
      |||||||||  |||||| |||||| |||||||||||||||||||||||||
seq2  GTCACAGGTTATTGCTTAAAGGTCTTTTTTACTACTGAGATTAGGTCAAG  950

seq1  GG-TTTAGAAAGTGTGGG-ACACTAGACAAACATCCACTGCCAATTAC-T  994
      || ||||||||||||||| ||||||||||||||||||||||  ||||| |
seq2  GGTTTTAGAAAGTGTGGGAACACTAGACAAACATCCACTGCTCATTACTT  1000

seq1  TTCGACGTCCA-TAGCTGCTTAAT-GGTTTTCAAGTCCCTGGAAACAATG  1042
      ||||||||||| |||||||||||| |||||||||||||  |||||| |||
seq2  TTCGACGTCCATTAGCTGCTTAATGGGTTTTCAAGTCCTGGGAAACTATG  1050

seq1  AAAAAAAGTGGCAT-GTACAATTTATATGAAATTTAAATT  1081
      |||||||||||||| ||||| ||||||||||| |||||||
seq2  AAAAAAAGTGGCATGGTACATTTTATATGAAACTTAAATT  1090