BAC Information

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BAC

Clone NameB6Ng01-201E16
Chromosome16 (Build37)
Map Location 16,984,293 - 16,985,452
singlet/doubletsinglet
Overlap geneMapk1
Upstream gene2310008H04Rik, LOC100043266, LOC224010, D16Ertd727e, Pkp2, EG433003, Yars2, Dnm1l, LOC665743, Fgd4, Olfr19, 4933404G15Rik, Spag6, EG665562, EG436405, Vpreb1, Top3b, Ppm1f, LOC100042783, EG623519
Downstream geneYpel1, Ppil2, 2610318N02Rik, Sdf2l1, LOC623568, Ccdc116, 1810015A11Rik, Ube2l3, Gm603, Hic2, D16Bwg1494e, Pik4ca, Serpind1, Snap29, Crkl, Aifm3, Lztr1, Thap7, 4930451C15Rik, P2rxl1, Slc7a4, Smpd4, Pcqap, EG433050, Map1lc3-ps8, EG665892, LOC100042830, Klhl22, Scarf2, Car15, Dgcr2, Tssk1, Tssk2, Es2el, Gscl, Slc25a1, Vpreb2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-201E16.bB6Ng01-201E16.g
ACCGA022109GA022110
length9491,140
definitionB6Ng01-201E16.b B6Ng01-201E16.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcaactgatgaataccaaatgactgagaagcacctgaaaaaatg
ttcaacatccttaatcatcaaggaaatgcaaatcaaaacaacctgagatt
ccacctcacaccagtcagaatggctaagatcaaaattcaggtgacatcag
atgctggtgaggatgtagagaaagaggaacactcctccattgttagtggg
attgcaagctggtacaaccactctggaaatcagtctggcggttcctcaga
aaattagatctattgctacaggaagatcctgcaatacctctcctgtgcat
atacccagaagatatcccaacttgtaatacggacacatactccactatgt
tcataacagccttatttataatagccagaagctggaaagaacccagatat
ccttcaacagaggattggatacagaaaatgtagtacatttacacagtgga
gtactactcagctattaaaaacaatgaatttatgaaattcttaggcaaat
ggatggatggatctggaggatattatcctgagtgaggtaacccaatcaca
aaagaacacacatgatatgcactcactgataagtggatattagcccagaa
acttagaatacctaagatacaatttgcaaaacacatgaaaatcaagaaga
aggaagaccaaagtgtggatactttgttccttcttagaatgggaaacaaa
atacccatggaaggagttacagagacaaagttcggagaagagcctgaagg
aaggaccatccagagactgccccacttggggatccccaccataaactgtg
ggaactaaaaggggctggggaaggagtggggagggaggatacctacgttc
agccagattcctcctatgctctgggcaggcagatgcaggaggtctgccca
gtgggcatcttatgtcactgaccccactcgagggaggggtacaggagca
gaattctgcacagcaagtggaaacttcaaaggtgaatagcaacaggatct
aaataatccatcttctcagggtggtggggaatgtgtgagttcaactgaca
gatcctaatttttttttgtccctacttaaaataatccccccttaaataaa
tgagcctatagtgggtaatcatgagtgtcaataataagtgttactggcat
atttaccagcaggtacagggtagtaatacatgcaagacaaatgtgatatg
gaaagtactttttctccattcctcttttgacttgcaggtccagttcactt
ttatcttcgtaattgtatactatgagacattttgctcataaaaatataac
tattcatgagtcttttctttaaaaaaaaaaaaaaagaacgttaattattc
tatcttgttagcacacttggtgaaaacacaccttttctggcatttctaaa
attatgactattcaaattttaatgcatttctgaatagacttgttcatcag
gaaaatatgccgaagtcctgagattattaaatcaaggagaggcctgtgca
atagctcaagagctgaagcatttaaaacaggatctttctacagcaaagct
tgattctagttcttcgccctgtaaaaggacttcctttcaataccttatct
gaaaaaggctgtcttctctttcctcaagatagctaagttaaattaaacta
tctcagagaccttcgataaatgaacttgttttagttaaaacaatacactt
caacattccacatgcaggaaatcctgcaagtgatcgtgcaaaaactattc
ttgaacactgaaacgttatggggaaacgatcacagtaatcgggctaaaac
atatggatacattcacactgttaagagagtactcttgagggtaacgacgg
gataatttaagtcaattaggactaactccaatacttcctaatattctaga
gtgatgctggcttatcctttctgaaacacatcggtatatttaaatccatt
ttgaaactcaggatttcaatatgttcacacacgctttgtcattacgttag
cccgagcagaaagcatcattaagcgctactagatatttgtgatgctgtca
cgttaccagagagaggaaaaatattttgggctcagacaca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_16984293_16985452
seq2: B6Ng01-201E16.g_69_1208 (reverse)

seq1  TGTGTGCTGAGCACCAAAATATTTTTCTTCTCTTCTGTGTACGTGAACAG  50
      ||||| |||||| |||||||||||||| |||| ||||   ||||| ||||
seq2  TGTGT-CTGAGC-CCAAAATATTTTTCCTCTC-TCTGGTAACGTG-ACAG  46

seq1  CATTCACAAAATATCTTAAGTAGCGC-TAATGATGCTTTCTGCCTCGGGC  99
      || |||| ||||||||  |||||||| ||||||||||||||| |||||||
seq2  CA-TCAC-AAATATCT--AGTAGCGCTTAATGATGCTTTCTG-CTCGGGC  91

seq1  TTAACCGTTAATGACACAGCGTTGGTTGTGGACATATTGAAATCTTGAAG  149
       ||||   |||||||| |||||    |||| ||||||||||||| || ||
seq2  -TAAC--GTAATGACAAAGCGT---GTGTGAACATATTGAAATCCTG-AG  134

seq1  TTTCAAAATGGATTTAAATATACCGATTGTGTTTCAGAAAGGATAAGCCA  199
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  TTTCAAAATGGATTTAAATATACCGA-TGTGTTTCAGAAAGGATAAGCCA  183

seq1  GCATCACTCTAGAATTATTAAGAAGTATTTGGAGTTAGTCCTAATTTGAC  249
      |||||||||||||| ||||| |||||| |||||||||||||||| |||||
seq2  GCATCACTCTAGAA-TATTAGGAAGTA-TTGGAGTTAGTCCTAA-TTGAC  230

seq1  TTTAAATTATCCCGTCGTTACCCTCAAGAGTACTCTCTTAACAGTGTGAA  299
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  -TTAAATTATCCCGTCGTTACCCTCAAGAGTACTCTCTTAACAGTGTGAA  279

seq1  TGTATCCATATGTTTTAGCCCGATTACTGTGATCGTTTCCCCATAACGTT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATCCATATGTTTTAGCCCGATTACTGTGATCGTTTCCCCATAACGTT  329

seq1  TCAGTGTTCAAGAATAGTTTTTGCACGATCACTTGCAGGATTTCCTGCAT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTGTTCAAGAATAGTTTTTGCACGATCACTTGCAGGATTTCCTGCAT  379

seq1  GTGGAATGTTGAAGTGTATTGTTTTAACTAAAACAAGTTCATTTATCGAA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAATGTTGAAGTGTATTGTTTTAACTAAAACAAGTTCATTTATCGAA  429

seq1  GGTCTCTGAGATAGTTTAATTTAACTTAGCTATCTTGAGGAAAGAGAAGA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTCTGAGATAGTTTAATTTAACTTAGCTATCTTGAGGAAAGAGAAGA  479

seq1  CAGCCTTTTTCAGATAAGGTATTGAAAGGAAGTCCTTTTACAGGGCGAAG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCTTTTTCAGATAAGGTATTGAAAGGAAGTCCTTTTACAGGGCGAAG  529

seq1  AACTAGAATCAAGCTTTGCTGTAGAAAGATCCTGTTTTAAATGCTTCAGC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAGAATCAAGCTTTGCTGTAGAAAGATCCTGTTTTAAATGCTTCAGC  579

seq1  TCTTGAGCTATTGCACAGGCCTCTCCTTGATTTAATAATCTCAGGACTTC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGAGCTATTGCACAGGCCTCTCCTTGATTTAATAATCTCAGGACTTC  629

seq1  GGCATATTTTCCTGATGAACAAGTCTATTCAGAAATGCATTAAAATTTGA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATATTTTCCTGATGAACAAGTCTATTCAGAAATGCATTAAAATTTGA  679

seq1  ATAGTCATAATTTTAGAAATGCCAGAAAAGGTGTGTTTTCACCAAGTGTG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTCATAATTTTAGAAATGCCAGAAAAGGTGTGTTTTCACCAAGTGTG  729

seq1  CTAACAAGATAGAATAATTAACGTTCTTTTTTTTTTTTTTTAAAGAAAAG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACAAGATAGAATAATTAACGTTCTTTTTTTTTTTTTTTAAAGAAAAG  779

seq1  ACTCATGAATAGTTATATTTTTATGAGCAAAATGTCTCATAGTATACAAT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCATGAATAGTTATATTTTTATGAGCAAAATGTCTCATAGTATACAAT  829

seq1  TACGAAGATAAAAGTGAACTGGACCTGCAAGTCAAAAGAGGAATGGAGAA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACGAAGATAAAAGTGAACTGGACCTGCAAGTCAAAAGAGGAATGGAGAA  879

seq1  AAAGTACTTTCCATATCACATTTGTCTTGCATGTATTACTACCCTGTACC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTACTTTCCATATCACATTTGTCTTGCATGTATTACTACCCTGTACC  929

seq1  TGCTGGTAAATATGCCAGTAACACTTATTATTGACACTCATGATTACCCA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGGTAAATATGCCAGTAACACTTATTATTGACACTCATGATTACCCA  979

seq1  CTATAGGCTCATTTATTTAAGGGGGGATTATTTTAAGTAGGGACAAAAAA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATAGGCTCATTTATTTAAGGGGGGATTATTTTAAGTAGGGACAAAAAA  1029

seq1  AAATTAGGATCTGTCAGTTGAACTCACACATTCCCCACCACCCTGAGAAG  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTAGGATCTGTCAGTTGAACTCACACATTCCCCACCACCCTGAGAAG  1079

seq1  ATGGATTATTTAGATCCTGTTGCTATTCACCTTTGAAGTTTCCACTTGCT  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGATTATTTAGATCCTGTTGCTATTCACCTTTGAAGTTTCCACTTGCT  1129

seq1  GTGCAGAATTC  1160
      |||||||||||
seq2  GTGCAGAATTC  1140