BAC Information

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BAC

Clone NameB6Ng01-201J03
Chromosome16 (Build37)
Map Location 60,525,067 - 60,526,222
singlet/doubletsinglet
Overlap geneEpha6
Upstream geneBC043118, LOC672884, Arl6, LOC100043804
Downstream geneEG668168, LOC668170, LOC100043524, LOC668183
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-201J03.bB6Ng01-201J03.g
ACCGA022307GA022308
length1,1821,144
definitionB6Ng01-201J03.b B6Ng01-201J03.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcacttgaaagttaatctgactaatgtctcatgtgtttataatata
aaactcagcagccattaaatgttattgactaatacaaaagaagctagctt
taagtcactgctcgtttgtccgtgcaaaggcagagcatgtagacgttcct
tggttgaaactattgctgtgttttagaggaaacaatcagagcgttataat
actctgaataatcgcctgacaataaataggagctaagacactgcaaaaaa
tgaagatgatagtgggcaatgtggtaatgattcttccagtttacacaacg
tatcctaaatgataatgctgatacggtttagaaatggggaaagcacctta
gagtcagattttttaaaaataatatctatttatttatttgtttgtttgta
attttttattagttattttattcatttacatttcaaatgttatccccctc
cctggtttcccctccgaaaactccctcccccactccctccaccctgcttc
tatgagggtgttcctccaactaccctcccactcccacttcaccaccctgg
catttccttaaactggggcatcgaccctgcacaggaccaagggcctctgc
tcttactgatgccagatgagacagtcctctgctacaaatgaggctggagc
catgggtccctccacgtgtgctctttggttggtggtttagtccctgggag
ctctgggggtctggttggttggtactattttactttcgatcgggttgcaa
acctctcagctccttcagtcctttctctaactcctccattggggacaccg
tgctcaatccaatggttggctgcaggtatctgtcaggctctggcagagcc
tctcaggagacagctacatcaggctcctgtcagcaagcacttcttggcat
ccacaatagtgtctgggtttgatatctgcagatgggatggatccctagtg
gggcagtctctggatggctttccttcagtctctgctcactcttgtctgca
tccctttagaacagagtattctgagtaaatttgagaatgggtgggttgcc
ctgtctctcacagaacaatgcttaacttcggaatatggtcttacagtctc
tcccttgattaggctaagtttatcccagttgggctgtactttgctctgga
atctgtactttcaagtggcatacccaggtcca

gaattctagaaattttgattattaataagaaacctaacctgaaaacctca
ataatgacttttattaaagaactatattcatataaaatagtatagataaa
ctatattcatataaaacagtaaagataaaattatgatacctaaaaataca
ttttctcagaaattaggtgagaattctgtcaagaataaaatgaagccttt
tactttgtaattatagaatgactatgaaaaaaatgacagaagtagtcaag
taaaaaaaatgaagattctgctctatatgaatgttttctttcaggagcaa
ttgttgaataaataacatttgctgtaaaatgtacattgcagtgaaaggtt
ctaaaacacgaagacatggcgatgtattttttcctatcagattcatattt
gagtttattgtaaaagaagcaaagtaaaacaaatcgttaaggaactgacg
aatgaaaacatttggaggaaaaataaactgtggagattatttacttgtac
tgagtaccgaatttttttttgtttcatagaaaaagaataagtaaaaatat
tcacaaataaccagtttagcttaatataaaaaataagtagaaatacactg
ggatatagaaatatataaaatgaaatgaagtgaaatatataaaagctcag
taatgaccatagctaaaatatcaatacctaggaagtaacataattttcta
gattacacatgtgcattagcctttagaagcaaccttgaagattacataaa
gatgtatcaccacaccaatttccaaatcagttttgtagtacctaattctt
ttttttttattaaatgatatgttgctcatgtttgttcactctaattatat
gttttgtctctgaggaaataaattttctattaccatatttaacctgagta
cagaaaaaaaaatcatagatatgtatgcatgtatattattttaaggaaaa
cgggtataaattttctaaaaattccattctttaaatggatactaaggaca
ttatacttaaagaaataagaaacagattattttatatagcgttacagtca
tcaccagttcagttggacttatcttttctatggtgacttaaggtgaataa
catctgtcccacaaatcgtggattcttaccttcctagagatcct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_60525067_60526222
seq2: B6Ng01-201J03.g_65_1208

seq1  GAATTCTAGAAATTTTGATTATTAATAAGAAACCTAACCTGAAAACCTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAGAAATTTTGATTATTAATAAGAAACCTAACCTGAAAACCTCA  50

seq1  ATAATGACTTTTATTAAAGAACTATATTCATATAAAATAGTATAGATAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATGACTTTTATTAAAGAACTATATTCATATAAAATAGTATAGATAAA  100

seq1  CTATATTCATATAAAACAGTAAAGATAAAATTATGATACCTAAAAATACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATATTCATATAAAACAGTAAAGATAAAATTATGATACCTAAAAATACA  150

seq1  TTTTCTCAGAAATTAGGTGAGAATTCTGTCAAGAATAAAATGAAGCCTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTCAGAAATTAGGTGAGAATTCTGTCAAGAATAAAATGAAGCCTTT  200

seq1  TACTTTGTAATTATAGAATGACTATGAAAAAAATGACAGAAGTAGTCAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTTGTAATTATAGAATGACTATGAAAAAAATGACAGAAGTAGTCAAG  250

seq1  TAAAAAAAATGAAGATTCTGCTCTATATGAATGTTTTCTTTCAGGAGCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAAAATGAAGATTCTGCTCTATATGAATGTTTTCTTTCAGGAGCAA  300

seq1  TTGTTGAATAAATAACATTTGCTGTAAAATGTACATTGCAGTGAAAGGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTGAATAAATAACATTTGCTGTAAAATGTACATTGCAGTGAAAGGTT  350

seq1  CTAAAACACGAAGACATGGCGATGTATTTTTTCCTATCAGATTCATATTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAACACGAAGACATGGCGATGTATTTTTTCCTATCAGATTCATATTT  400

seq1  GAGTTTATTGTAAAAGAAGCAAAGTAAAACAAATCGTTAAGGAACTGACG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTTATTGTAAAAGAAGCAAAGTAAAACAAATCGTTAAGGAACTGACG  450

seq1  AATGAAAACATTTGGAGGAAAAATAAACTGTGGAGATTATTTACTTGTAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAAAACATTTGGAGGAAAAATAAACTGTGGAGATTATTTACTTGTAC  500

seq1  TGAGTACCGAATTTTTTTTTGTTTCATAGAAAAAGAATAAGTAAAAATAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTACCGAATTTTTTTTTGTTTCATAGAAAAAGAATAAGTAAAAATAT  550

seq1  TCACAAATAACCAGTTTAGCTTAATATAAAAAATAAGTAGAAATACACTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAAATAACCAGTTTAGCTTAATATAAAAAATAAGTAGAAATACACTG  600

seq1  GGATATAGAAATATATAAAATGAAATGAAGTGAAATATATAAAAGCTCAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATATAGAAATATATAAAATGAAATGAAGTGAAATATATAAAAGCTCAG  650

seq1  TAATGACCATAGCTAAAATATCAATACCTAGGAAGTAACATAATTTTCTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGACCATAGCTAAAATATCAATACCTAGGAAGTAACATAATTTTCTA  700

seq1  GATTACACATGTGCATTAGCCTTTAGAAGCAACCTTGAAGATTACATAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTACACATGTGCATTAGCCTTTAGAAGCAACCTTGAAGATTACATAAA  750

seq1  GATGTATCACCACACCAATTTCCAAATCAGTTTTGTAGTACCTAATTC-T  799
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  GATGTATCACCACACCAATTTCCAAATCAGTTTTGTAGTACCTAATTCTT  800

seq1  TTTTTTTTATTAAATGATATGTTGCTCATGTTTGTTCACTCTAATTATAT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTATTAAATGATATGTTGCTCATGTTTGTTCACTCTAATTATAT  850

seq1  GTTTTGTCTCTGAGGAAATAAATTTTCTATTACCATATTTAACCTGAGTA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTGTCTCTGAGGAAATAAATTTTCTATTACCATATTTAACCTGAGTA  900

seq1  CAG-AAAAAAAATCATAGATATGTATGCATGTATATTATTTTAAGGAAAA  948
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAAAAAAAATCATAGATATGTATGCATGTATATTATTTTAAGGAAAA  950

seq1  CGGGTATAAATTTTCTAAAAATTCCATTCTTAAAATGGAATACTAAAGAA  998
      ||||||||||||||||||||||||||||||| |||||| ||||||| || 
seq2  CGGGTATAAATTTTCTAAAAATTCCATTCTTTAAATGG-ATACTAAGGA-  998

seq1  CAATTATTAACTTAAAAGAAAATAAGAAAACAAGATTA-TTTATATAGCG  1047
        |||||  |||||||   ||||||||||   |||||| |||||||||||
seq2  -CATTAT--ACTTAAA--GAAATAAGAAA--CAGATTATTTTATATAGCG  1041

seq1  TTAACAGTCATCACCAGTTCAGTTGGACTTTAATCTTTTCTAT-GTGACT  1096
      || |||||||||||||||||||||||||||  ||||||||||| ||||||
seq2  TT-ACAGTCATCACCAGTTCAGTTGGACTT--ATCTTTTCTATGGTGACT  1088

seq1  TAA-GTGATATACAAATCTGT-CCACAAATCTGTGGTTCCTTTACCTTTC  1144
      ||| |||| ||| | |||||| ||||||||| |||| | | ||||| |||
seq2  TAAGGTGA-ATA-ACATCTGTCCCACAAATC-GTGGATTC-TTACC-TTC  1133

seq1  ATAGAAGATCCT  1156
       ||| |||||||
seq2  CTAG-AGATCCT  1144


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