BAC Information

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BAC

Clone NameB6Ng01-202G24
Chromosome16 (Build37)
Map Location 25,298,278 - 25,478,566
singlet/doubletdoublet
Overlap gene5430420C16Rik
Upstream geneLOC666580, LOC100043564, 1110054M08Rik, Lpp, A730098P11Rik
Downstream geneTrp63, LOC100043571, Leprel1, Cldn1, Cldn16
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-202G24.bB6Ng01-202G24.g
ACCGA022929GA022930
length1,1221,111
definitionB6Ng01-202G24.b B6Ng01-202G24.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(25,298,278 - 25,299,490)(25,477,455 - 25,478,566)
sequence
gaattccaggctggggctgacccagagccttctccactgccactaagctt
catgtcctgcttggctcatggttgctgttagatttcttggactatcacac
cccttccaacactgccacctaaaaagccatgttctgaactccaatgatat
tttaatactctgctggttttctttagacccattagctcacacagtcatta
aacttctccctaaggcatattttggattcacttcacagttgagaaaactc
aagttgagaggttttaattgttatgtgacctcaggcagctggtaagttgt
ggagcctggattcaagcccaggtctatctgattccgaagctttctctacc
tctgacatgctgttccctgagaaaatattgattgcccaaaatgaatcaat
ttatgtcttcactgcttcttgtccattatctcgtgaaagggttggcttaa
ttaattcccctaacatttgtgtcttcagatcgtaggtgagggatcttgac
acataacccacacattgtgcttaaatcaaaagtgcagatatctttcaggc
tccaatggagaaagctcagctctctggctttgtcactccacccagcagct
gatgtaagggattaaaagcaatgggaaacattagaaaactaaaaactatt
gatgatggaaaactcacctcattacaaatacaaacaatactacaaaccac
agtgaagatgtgttttagaagaaacaatctgacctttttatattttttta
gaattgcacatgagtactatttttacatggttttacttcaaaatttttct
ccctctaacttctcccatgtctttttcattctctataaagttcatatgct
cttatttctttaattattactgctttataatacatttacatacataccta
aattatatataaatttatatatattttatattatctagtttccacatatt
tatatttaaatgttttatatattacatataattatcctatatattgtata
aatgtagaaaattattacatttttggtataaatatatattatattctata
actttaatatattttaaatattatggttttaatatagagaattagtttta
tatatatattaaaactgtagaa

gaattctacctagacacaatggcaaaggctgcatagatggggactgccaa
aacccctaagctggagtgagcctattatgattttacaatttattatttgt
tttcataatgagaacttgaatgtcacgtactgtgggagacagtgttaaaa
caaaccttcaggagaaaagttacagttgacaatgtcagctgctcctgcca
ctgcagaaatgcagaaaatatttcaggtcctcacccagccttaaagtgct
catggacaaatgacttatttaaaactacttaaaccaccttgacttgcact
accgttgtatgtctgagttatggcccaaagtcagcatcttcccacgtata
ctttggaccctagttgaattcaaacattaaactcaggattccaatgaagc
cagtttcaatgtcatctatctctttgaagacttagagggctttcctacct
acaatattgtcacttgtgggtgtgctatctgaaaacacatgaactgttcc
aaatgggatacagctttgataaggtagggctcctttaaaacatggaaact
gattttgaggaaccatcgtcatctcctctgcatccttacgaactgtgcta
attgttccgcaaccctttcaacctgggaagtctaagcgttagcttttaat
gtccagtgtttctgtgattatggaacaatctgtatactggaaattatata
tccctcgatttcattttttattagtggtattttttccttcagaaaccccc
cccccccatcctaccaagcaaaatttgacaaaactttaccttaactgtaa
ggcccaactcaaacaccatttgggaaagaggctctttctcaatttgaatt
caaaactttcctttaaaacattgaaagaagttcagatttcatgtgctgct
cacaatattttgtactgaacccaatagatcagttaaactctatggctaat
gcatttaaggtcaaacagggtaagaagctaggagaaccacagacacgtgc
tcagagtcaaattctatgtctatctctagtacgtttttgtagaactaatt
tagtgtttctgagtccacagaggtatacaccccaatcatttatttccatg
ttacccctatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_25298278_25299490
seq2: B6Ng01-202G24.b_43_1164

seq1  GAATTCCAGGCTGGGGCTGACCCAGAGCCTTCTCCACTGCCACTAAGCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGCTGGGGCTGACCCAGAGCCTTCTCCACTGCCACTAAGCTT  50

seq1  CATGTCCTGCTTGGCTCATGGTTGCTGTTAGATTTCTTGGACTATCACAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTCCTGCTTGGCTCATGGTTGCTGTTAGATTTCTTGGACTATCACAC  100

seq1  CCCTTCCAACACTGCCACCTAAAAAGCCATGTTCTGAACTCCAATGATAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTCCAACACTGCCACCTAAAAAGCCATGTTCTGAACTCCAATGATAT  150

seq1  TTTAATACTCTGCTGGTTTTCTTTAGACCCATTAGCTCACACAGTCATTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATACTCTGCTGGTTTTCTTTAGACCCATTAGCTCACACAGTCATTA  200

seq1  AACTTCTCCCTAAGGCATATTTTGGATTCACTTCACAGTTGAGAAAACTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTCTCCCTAAGGCATATTTTGGATTCACTTCACAGTTGAGAAAACTC  250

seq1  AAGTTGAGAGGTTTTAATTGTTATGTGACCTCAGGCAGCTGGTAAGTTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTGAGAGGTTTTAATTGTTATGTGACCTCAGGCAGCTGGTAAGTTGT  300

seq1  GGAGCCTGGATTCAAGCCCAGGTCTATCTGATTCCGAAGCTTTCTCTACC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCCTGGATTCAAGCCCAGGTCTATCTGATTCCGAAGCTTTCTCTACC  350

seq1  TCTGACATGCTGTTCCCTGAGAAAATATTGATTGCCCAAAATGAATCAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGACATGCTGTTCCCTGAGAAAATATTGATTGCCCAAAATGAATCAAT  400

seq1  TTATGTCTTCACTGCTTCTTGTCCATTATCTCGTGAAAGGGTTGGCTTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGTCTTCACTGCTTCTTGTCCATTATCTCGTGAAAGGGTTGGCTTAA  450

seq1  TTAATTCCCCTAACATTTGTGTCTTCAGATCGTAGGTGAGGGATCTTGAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTCCCCTAACATTTGTGTCTTCAGATCGTAGGTGAGGGATCTTGAC  500

seq1  ACATAACCCACACATTGTGCTTAAATCAAAAGTGCAGATATCTTTCAGGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAACCCACACATTGTGCTTAAATCAAAAGTGCAGATATCTTTCAGGC  550

seq1  TCCAATGGAGAAAGCTCAGCTCTCTGGCTTTGTCACTCCACCCAGCAGCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAATGGAGAAAGCTCAGCTCTCTGGCTTTGTCACTCCACCCAGCAGCT  600

seq1  GATGTAAGGGATTAAAAGCAATGGGAAACATTAGAAAACTAAAAACTATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTAAGGGATTAAAAGCAATGGGAAACATTAGAAAACTAAAAACTATT  650

seq1  GATGATGGAAAACTCACCTCATTACAAATACAAACAATACTACAAACCAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGATGGAAAACTCACCTCATTACAAATACAAACAATACTACAAACCAC  700

seq1  AGTGAAGATGTGTTTTAGAAGAAACAATCTGACCTTTTTATATTTTTTTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAAGATGTGTTTTAGAAGAAACAATCTGACCTTTTTATATTTTTTTA  750

seq1  GAATTGCACATGAGTACTATTTTTACATGGTTTTACTTCAAAATTTTTCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTGCACATGAGTACTATTTTTACATGGTTTTACTTCAAAATTTTTCT  800

seq1  CCCTCTAACTTCTCCCATGTCTTTTTCATTCTCTATAAAGTTCATATGCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCTAACTTCTCCCATGTCTTTTTCATTCTCTATAAAGTTCATATGCT  850

seq1  CTTA-TTCTTTAATTATTACTGCTTTAT-ATACATTTACATACATACCT-  897
      |||| ||||||||||||||||||||||| |||||||||||||||||||| 
seq2  CTTATTTCTTTAATTATTACTGCTTTATAATACATTTACATACATACCTA  900

seq1  AATTATATATAAATTTATATATA-TTTATATTATCTAGTTTCCACATATT  946
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  AATTATATATAAATTTATATATATTTTATATTATCTAGTTTCCACATATT  950

seq1  TATATTT-AATGTTTTATATATTACATATAAATATCCTATATAATGTATA  995
      ||||||| ||||||||||||||||||||||| ||||||||||| ||||||
seq2  TATATTTAAATGTTTTATATATTACATATAATTATCCTATATATTGTATA  1000

seq1  AATGTAGAAAA-TATTACA-TTTTGGTATAAATATATATTTATATTTTAT  1043
      ||||||||||| ||||||| |||||||||||||||||| ||||||| |||
seq2  AATGTAGAAAATTATTACATTTTTGGTATAAATATATA-TTATATTCTAT  1049

seq1  AA--TTTATATA-TTTAAATATTATG--TTTTATATAGAGAATAATTTAT  1088
      ||  || ||||| |||||||||||||  ||| ||||||||||| | || |
seq2  AACTTTAATATATTTTAAATATTATGGTTTTAATATAGAGAATTAGTTTT  1099

seq1  ATA-ATATA-TAAAAATGTAGAAAACAATTATATTATATACACCAAATAT  1136
      ||| ||||| ||||| |||||||                           
seq2  ATATATATATTAAAACTGTAGAA---------------------------  1122

seq1  TTGTTTATATTTCCTTGTATGTTTAAGGCTGGCCCCTTGGCATTAGATTA  1186
                                                        
seq2  --------------------------------------------------  1122

seq1  CCTATCATAGGGCTTATTTCTGTAGAA  1213
                                 
seq2  ---------------------------  1122


seq1: chr16_25477455_25478566
seq2: B6Ng01-202G24.g_64_1174 (reverse)

seq1  CATA-GGGTACAATGGAAATAAATGATT-TGGTGTATACTTCTGT-GACT  47
      |||| |||||  ||||||||||||||||  ||||||||| ||||| ||||
seq2  CATAGGGGTAACATGGAAATAAATGATTGGGGTGTATACCTCTGTGGACT  50

seq1  CAGAAACACTAAATTAGTTCCTAC-AAAACGTACTAGAGATAGAACATAG  96
      ||||||||||||||||||| |||| |||||||||||||||||| ||||||
seq2  CAGAAACACTAAATTAGTT-CTACAAAAACGTACTAGAGATAG-ACATAG  98

seq1  -ATTTGACTCTGAGCACGTTGTCTGTGGTTCTCCTAGCTTCTTACCCTGT  145
       ||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  AATTTGACTCTGAGCACG-TGTCTGTGGTTCTCCTAGCTTCTTACCCTGT  147

seq1  TTGACCTTAAATGCATTAGCCATAGAGTTTAACTGATCTATTTGGGTTTC  195
      ||||||||||||||||||||||||||||||||||||||||||  || |||
seq2  TTGACCTTAAATGCATTAGCCATAGAGTTTAACTGATCTATT--GGGTTC  195

seq1  AGTACAAAATATTGTGAGCAAGCACATGAAATCTGAACTTCCTTCAATGT  245
      ||||||||||||||||||| ||||||||||||||||||||| ||||||||
seq2  AGTACAAAATATTGTGAGC-AGCACATGAAATCTGAACTTCTTTCAATGT  244

seq1  TTTAAAGGAAAGTTTTGAAATTCAAATTGAGAAAGAGCCTCTTTCCCAAA  295
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  TTTAAAGGAAAGTTTTG-AATTCAAATTGAGAAAGAGCCTCTTTCCCAAA  293

seq1  TGGTGTTTGAGTTGGGCCTTACAGTTAAGGTAAAGTTTTGTCAAATTTTG  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGTTTGAGTTGGGCCTTACAGTTAAGGTAAAGTTTTGTCAAATTTTG  343

seq1  CTTGGTAGGAT-GGGGGGGGGGGTTTCTGAAGGAAAAAATACCACTAATA  394
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  CTTGGTAGGATGGGGGGGGGGGGTTTCTGAAGGAAAAAATACCACTAATA  393

seq1  AAAAATGAAATCGAGGGATATATAATTTCCAGTATACAGATTGTTCCATA  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATGAAATCGAGGGATATATAATTTCCAGTATACAGATTGTTCCATA  443

seq1  ATCACAGAAACACTGGACATTAAAAGCTAACGCTTAGACTTCCCAGGTTG  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACAGAAACACTGGACATTAAAAGCTAACGCTTAGACTTCCCAGGTTG  493

seq1  AAAGGGTTGCGGAACAATTAGCACAGTTCGTAAGGATGCAGAGGAGATGA  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGGTTGCGGAACAATTAGCACAGTTCGTAAGGATGCAGAGGAGATGA  543

seq1  CGATGGTTCCTCAAAATCAGTTTCCATGTTTTAAAGGAGCCCTACCTTAT  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGATGGTTCCTCAAAATCAGTTTCCATGTTTTAAAGGAGCCCTACCTTAT  593

seq1  CAAAGCTGTATCCCATTTGGAACAGTTCATGTGTTTTCAGATAGCACACC  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGCTGTATCCCATTTGGAACAGTTCATGTGTTTTCAGATAGCACACC  643

seq1  CACAAGTGACAATATTGTAGGTAGGAAAGCCCTCTAAGTCTTCAAAGAGA  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAGTGACAATATTGTAGGTAGGAAAGCCCTCTAAGTCTTCAAAGAGA  693

seq1  TAGATGACATTGAAACTGGCTTCATTGGAATCCTGAGTTTAATGTTTGAA  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATGACATTGAAACTGGCTTCATTGGAATCCTGAGTTTAATGTTTGAA  743

seq1  TTCAACTAGGGTCCAAAGTATACGTGGGAAGATGCTGACTTTGGGCCATA  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAACTAGGGTCCAAAGTATACGTGGGAAGATGCTGACTTTGGGCCATA  793

seq1  ACTCAGACATACAACGGTAGTGCAAGTCAAGGTGGTTTAAGTAGTTTTAA  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAGACATACAACGGTAGTGCAAGTCAAGGTGGTTTAAGTAGTTTTAA  843

seq1  ATAAGTCATTTGTCCATGAGCACTTTAAGGCTGGGTGAGGACCTGAAATA  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGTCATTTGTCCATGAGCACTTTAAGGCTGGGTGAGGACCTGAAATA  893

seq1  TTTTCTGCATTTCTGCAGTGGCAGGAGCAGCTGACATTGTCAACTGTAAC  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTGCATTTCTGCAGTGGCAGGAGCAGCTGACATTGTCAACTGTAAC  943

seq1  TTTTCTCCTGAAGGTTTGTTTTAACACTGTCTCCCACAGTACGTGACATT  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTCCTGAAGGTTTGTTTTAACACTGTCTCCCACAGTACGTGACATT  993

seq1  CAAGTTCTCATTATGAAAACAAATAATAAATTGTAAAATCATAATAGGCT  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTTCTCATTATGAAAACAAATAATAAATTGTAAAATCATAATAGGCT  1043

seq1  CACTCCAGCTTAGGGGTTTTGGCAGTCCCCATCTATGCAGCCTTTGCCAT  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCCAGCTTAGGGGTTTTGGCAGTCCCCATCTATGCAGCCTTTGCCAT  1093

seq1  TGTGTCTAGGTAGAATTC  1112
      ||||||||||||||||||
seq2  TGTGTCTAGGTAGAATTC  1111


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