BAC Information

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BAC

Clone NameB6Ng01-202O07
Chromosome16 (Build37)
Map Location 59,611,365 - 59,763,152
singlet/doubletdoublet
Overlap geneArl6, Epha6
Upstream geneGm813, E330017A01Rik, Cpox, LOC100043790, Gpr15, Cldnd1, Olfr172, Olfr173, Olfr174, Olfr178, Olfr180, Olfr1563-ps1, Olfr181, Olfr182-ps1, Olfr183, Olfr185-ps1, Olfr186, Olfr187, Olfr188-ps1, Olfr189-ps1, Olfr190, Olfr191, Olfr192, Olfr193, Olfr1540-ps1, Olfr194, Olfr195, Olfr196, Olfr197, Olfr198, Olfr199, Olfr200-ps1, Olfr201, Olfr202, Olfr203, Olfr204, Olfr205, GA_x5J8B7U0478-6-340, Olfr206, Olfr207, Gabrr3, LOC100043803, Mina, BC043118, LOC672884
Downstream geneLOC100043804, EG668168, LOC668170
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-202O07.bB6Ng01-202O07.g
ACCGA023263GA023264
length8641,154
definitionB6Ng01-202O07.b B6Ng01-202O07.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(59,762,287 - 59,763,152)(59,611,365 - 59,612,497)
sequence
gaattcagtgtcagagaaagaagtggaaattttagtgtaactacaggcaa
aaaccactgaacatttgacagaaaagatgatagaattgatgctctaagag
ctacctgtgcctggcatgttgaaaagaatgtataaaggaacaaggaaaga
tatagggaagatgcttgattcagaactggtacttggtataaatcagtgta
aacccaaagattggagaagggcaggcagccttggggaacaaaatctctga
gaaaagaaaaaaggcaggcaaaatagatactgtcctgataatttgtggag
tgtgtgtatgtgtgtgcgtgtgtatgtgtgtgtgtgtgtgctttgctttg
ctttttataagttaagaaattgaagtgctggagagatggttcagaggtta
agagtactgactgctcttccagaggtcctgagttcaattcccagcaacca
cacagtggcttacaaccatctgtaatgggatctgatatactcttctggtg
tgtctgaagacaactacagtgtacctatataaataaaaatagataatatt
ttaaaaaagaaaaagaaaagaaattgagagtgaaagaaatttagtgatgt
gctcaccaccataacatatggtcattttataaaatctagagtgtctagag
cagtatataagacccagtaggcacttactacacactcatttcacacgatc
tcaggagattcaagaccatggtcatttcatggctgtcttgttcccaaatt
ctgagaacttttcccttctacaagctttatgaattaaaatgaaaagcaaa
ttatatacacatttatgaataatgtttctatgtgggtcatcaaatagttt
taagtataatatta
gaattcagttccaggaatccacgtgatagaaggacagaaccaactcctga
aaattgtcatcttactccacatagcatttcctccacagaaaaacaaaaac
aaacaaacaaacaaacaaacaaaacgtgttgtggtggtttgaatatgctt
ggcccatggaaagtagccattgttagaagtgtgccaccgtgggagtggac
tttttgagagcctcctcctagcttgatggtggaagatggcatctcttcct
ggctgcttttgaatcaagatgtagaactcagcttcttctccaccacgttt
gcctgcatgttggcatgctttccaccaaagatgataatggagtgaacctc
tgaaattataaactagcctcaattacatgttgtcctttgtaagagttacc
ttggtcatggtgtctcttcatagcaatagaaaccctaactaaggcacacg
tttaaaaaatatatcatttctatctatatttgaggcaactctagactgat
gacatcctgaacgcatactaataaaagaagcttatggcatgctatcaaaa
tagacacaccactaaccactacaatattctgatgatctttagttttgcaa
atgtccattaattggtgtttctagactttgagaaattggattatatatct
ttgactgctatttttatgaaatctgtaaagacatctacctccaatggata
catgtaccaatgtgtctgcattactcaccttttgccttgttatttttgtg
actaagaatgtttaagatgctatataattatagcttttaattcaaatgca
atgttttcagaactggcatcactgttgtgagaatagtttcagtgtctatt
taaaagggaagtatgaacttgagtttacaattataaatggtatttcttta
ggttgtcagaagttacattatgttgtgttcctgagattatgtcctaaaaa
ttctgaagaacattccaaaataagcagtttaataaacagtttagctgagg
ttagtgaatcctgctgtactgactacccaagaaagacttccttaaagcag
tggaatttgaactggaggatacaccctttgaagcggtgtgcaccagattt
ctcttctttctttgctcccttaactggtaaagatgaaagaggcttccctc
tgca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_59762287_59763152
seq2: B6Ng01-202O07.b_46_909 (reverse)

seq1  TAATATTATTACTTAAAACTATTTGATGACCCACATAGAAACATTATTCA  50
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  TAATATTA-TACTTAAAACTATTTGATGACCCACATAGAAACATTATTCA  49

seq1  TATATGTGTATATAATTTGCTTTTTCATTTTAATTCATTAAGCTTGTAGA  100
      || ||||||||||||||||| ||||||||||||||||| |||||||||||
seq2  TAAATGTGTATATAATTTGC-TTTTCATTTTAATTCATAAAGCTTGTAGA  98

seq1  AGGGAAAAGTTCTCAGAATTTGGGAACAAGACAGCCATGAAATGACCATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAAAAGTTCTCAGAATTTGGGAACAAGACAGCCATGAAATGACCATG  148

seq1  TTCTTGAATCTCCTGAGATCGTGTGAAATGAGTGTGTAGTAAGTGCCTAC  200
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTGAATCTCCTGAGATCGTGTGAAATGAGTGTGTAGTAAGTGCCTAC  198

seq1  TGGGTCTTATATACTGCTCTAGACACTCTAGATTTTATAAAATGACCATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTCTTATATACTGCTCTAGACACTCTAGATTTTATAAAATGACCATA  248

seq1  TGTTATGGTGGTGAGCACATCACTAAATTTCTTTCACTCTCAATTTCTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTATGGTGGTGAGCACATCACTAAATTTCTTTCACTCTCAATTTCTTT  298

seq1  TCTTTTTCTTTTTTAAAATATTATCTATTTTTATTTATATAGGTACACTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTTCTTTTTTAAAATATTATCTATTTTTATTTATATAGGTACACTG  348

seq1  TAGTTGTCTTCAGACACACCAGAAGAGTATATCAGATCCCATTACAGATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTGTCTTCAGACACACCAGAAGAGTATATCAGATCCCATTACAGATG  398

seq1  GTTGTAAGCCACTGTGTGGTTGCTGGGAATTGAACTCAGGACCTCTGGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTAAGCCACTGTGTGGTTGCTGGGAATTGAACTCAGGACCTCTGGAA  448

seq1  GAGCAGTCAGTACTCTTAACCTCTGAACCATCTCTCCAGCACTTCAATTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAGTCAGTACTCTTAACCTCTGAACCATCTCTCCAGCACTTCAATTT  498

seq1  CTTAACTTATAAAAAGCAAAGCAAAGCACACACACACACACATACACACG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAACTTATAAAAAGCAAAGCAAAGCACACACACACACACATACACACG  548

seq1  CACACACATACACACACTCCACAAATTATCAGGACAGTATCTATTTTGCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACATACACACACTCCACAAATTATCAGGACAGTATCTATTTTGCC  598

seq1  TGCCTTTTTTCTTTTCTCAGAGATTTTGTTCCCCAAGGCTGCCTGCCCTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTTTTTTCTTTTCTCAGAGATTTTGTTCCCCAAGGCTGCCTGCCCTT  648

seq1  CTCCAATCTTTGGGTTTACACTGATTTATACCAAGTACCAGTTCTGAATC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAATCTTTGGGTTTACACTGATTTATACCAAGTACCAGTTCTGAATC  698

seq1  AAGCATCTTCCCTATATCTTTCCTTGTTCCTTTATACATTCTTTTCAACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCATCTTCCCTATATCTTTCCTTGTTCCTTTATACATTCTTTTCAACA  748

seq1  TGCCAGGCACAGGTAGCTCTTAGAGCATCAATTCTATCATCTTTTCTGTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAGGCACAGGTAGCTCTTAGAGCATCAATTCTATCATCTTTTCTGTC  798

seq1  AAATGTTCAGTGGTTTTTGCCTGTAGTTACACTAAAATTTCCACTTCTTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTTCAGTGGTTTTTGCCTGTAGTTACACTAAAATTTCCACTTCTTT  848

seq1  CTCTGACACTGAATTC  866
      ||||||||||||||||
seq2  CTCTGACACTGAATTC  864

seq1: chr16_59611365_59612497
seq2: B6Ng01-202O07.g_68_1220

seq1  GAATTCAGTTCCAGGAATCCACGTGATAGAAGGACAGAACCAACTCCTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTTCCAGGAATCCACGTGATAGAAGGACAGAACCAACTCCTGA  50

seq1  AAATTGTCATCTTACTCCACATAGCATTTCCTCCACAGAAAAACAAAAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTGTCATCTTACTCCACATAGCATTTCCTCCACAGAAAAACAAAAAC  100

seq1  AAACAAACAAACAAACAAACAAAACGTGTTGTGGTGGTTTGAATATGCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAACAAACAAACAAACAAAACGTGTTGTGGTGGTTTGAATATGCTT  150

seq1  GGCCCATGGAAAGTAGCCATTGTTAGAAGTGTGCCACCGTGGGAGTGGAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCATGGAAAGTAGCCATTGTTAGAAGTGTGCCACCGTGGGAGTGGAC  200

seq1  TTTTTGAGAGCCTCCTCCTAGCTTGATGGTGGAAGATGGCATCTCTTCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGAGAGCCTCCTCCTAGCTTGATGGTGGAAGATGGCATCTCTTCCT  250

seq1  GGCTGCTTTTGAATCAAGATGTAGAACTCAGCTTCTTCTCCACCACGTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGCTTTTGAATCAAGATGTAGAACTCAGCTTCTTCTCCACCACGTTT  300

seq1  GCCTGCATGTTGGCATGCTTTCCACCAAAGATGATAATGGAGTGAACCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGCATGTTGGCATGCTTTCCACCAAAGATGATAATGGAGTGAACCTC  350

seq1  TGAAATTATAAACTAGCCTCAATTACATGTTGTCCTTTGTAAGAGTTACC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATTATAAACTAGCCTCAATTACATGTTGTCCTTTGTAAGAGTTACC  400

seq1  TTGGTCATGGTGTCTCTTCATAGCAATAGAAACCCTAACTAAGGCACACG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTCATGGTGTCTCTTCATAGCAATAGAAACCCTAACTAAGGCACACG  450

seq1  TTTAAAAAATATATCATTTCTATCTATATTTGAGGCAACTCTAGACTGAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAAAATATATCATTTCTATCTATATTTGAGGCAACTCTAGACTGAT  500

seq1  GACATCCTGAACGCATACTAATAAAAGAAGCTTATGGCATGCTATCAAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATCCTGAACGCATACTAATAAAAGAAGCTTATGGCATGCTATCAAAA  550

seq1  TAGACACACCACTAACCACTACAATATTCTGATGATCTTTAGTTTTGCAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACACACCACTAACCACTACAATATTCTGATGATCTTTAGTTTTGCAA  600

seq1  ATGTCCATTAATTGGTGTTTCTAGACTTTGAGAAATTGGATTATATATCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCCATTAATTGGTGTTTCTAGACTTTGAGAAATTGGATTATATATCT  650

seq1  TTGACTGCTATTTTTATGAAATCTGTAAAGACATCTACCTCCAATGGATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACTGCTATTTTTATGAAATCTGTAAAGACATCTACCTCCAATGGATA  700

seq1  CATGTACCAATGTGTCTGCATTACTCACCTTTTGCCTTGTTATTTTTGTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTACCAATGTGTCTGCATTACTCACCTTTTGCCTTGTTATTTTTGTG  750

seq1  ACTAAGAATGTTTAAGATGCTATATAATTATAGCTTTTAATTCAAATGCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAGAATGTTTAAGATGCTATATAATTATAGCTTTTAATTCAAATGCA  800

seq1  ATGTTTTCAGAACTGGCATCACTGTTGTGAGAATAGTTTCAGTGTCTATT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTTTCAGAACTGGCATCACTGTTGTGAGAATAGTTTCAGTGTCTATT  850

seq1  TAAAAAGGAAGTATGAACTTGAGTTTACAATTATAAATGGTATTTCTTTA  900
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAGGGAAGTATGAACTTGAGTTTACAATTATAAATGGTATTTCTTTA  900

seq1  GGTTGTCAGAAGTTACA-TATGTTGTGTTCCTGAGA-TATGTC--TAAAA  946
      ||||||||||||||||| |||||||||||||||||| ||||||   ||||
seq2  GGTTGTCAGAAGTTACATTATGTTGTGTTCCTGAGATTATGTCCTAAAAA  950

seq1  TTCTGAAGAACATTC--ACAT-AGCAGTTT-ATAAACAG-TTAGCTGAGG  991
      |||||||||||||||  | || |||||||| |||||||| ||||||||||
seq2  TTCTGAAGAACATTCCAAAATAAGCAGTTTAATAAACAGTTTAGCTGAGG  1000

seq1  -TAGTGGAATCTGCTGTAACTGACTACCCA--GAAGAC-TCCTT-AAGCA  1036
       ||||| |  ||||||| ||||||||||||   ||||| ||||| |||||
seq2  TTAGTGAATCCTGCTGT-ACTGACTACCCAAGAAAGACTTCCTTAAAGCA  1049

seq1  GTG--AATTGAACT-GAGGATACACCC-CTGAAGCGGTGTTGCACCCAGG  1082
      |||  | ||||||| ||||||||||||  |||||||||| |||| |||| 
seq2  GTGGAATTTGAACTGGAGGATACACCCTTTGAAGCGGTG-TGCA-CCAGA  1097

seq1  TTTCTCTTCTTTCTTTGCTTCCTTAGCT-GTAAAG-TG-AAGA-GCTT-C  1127
      ||||||||||||||||||| ||||| || |||||| || |||| |||| |
seq2  TTTCTCTTCTTTCTTTGCTCCCTTAACTGGTAAAGATGAAAGAGGCTTCC  1147

seq1  CTCTGC  1133
      ||||||
seq2  CTCTGC  1153