BAC Information

Click to search

BAC

Clone NameB6Ng01-203C11
Chromosome16 (Build37)
Map Location 33,347,724 - 33,472,228
singlet/doubletdoublet
Overlap geneZfp148
Upstream geneUbxd7, Tm4sf19, 0610012D17Rik, Pcyt1a, Osta, Zdhhc19, LOC385820, Tfrc, Tnk2, ENSMUSG00000075265, LOC672302, Muc4, Muc20, 1700021K19Rik, Fyttd1, Lrch3, EG625660, Iqcg, Rpl35a, Lmln, LOC638791, Osbpl11, Snx4
Downstream geneSlc12a8, 4632417D23Rik, Heg1, Muc13, Itgb5, Umps, Kalrn, LOC100043670
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-203C11.bB6Ng01-203C11.g
ACCGA023447GA023448
length9561,165
definitionB6Ng01-203C11.b B6Ng01-203C11.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(33,347,724 - 33,348,682)(33,471,057 - 33,472,228)
sequence
gaattctttcctccctaagttgattttggtcatggtgtttcttcatagca
atggcaaccctaattgtgtttgcttgcttgatttagcgtggctccacacc
cttctgcagaagcaaagctttttgccttactgaaatactttgaatacttc
tggagacctcagacctgtttcttacaatagtcacttgggaaacaatctgg
caattttattttatttttttataaagctgaccatcccttaataaaggact
tagcagtcctattcctattgagtaactgaagagttcatcaactgtaaatc
aatccaggagcaatccatgaaatgctcttcagatataaaagagcagagct
actgccacaagcgaagaaagccatggaggagactaaacttgtaagagaag
tcggatccaaagggctgcacgcttagctggagtggtggcagggcctgtaa
ttccagaatttgaccaaagaagggtgagttcaagtccatcctgggctaca
tagggaaactactgcaaaaacaagaaccaaccaaaaaaagcttgttctag
gatcctgctcacatgctgcctttcaaaacccgcagggacaggaagccatc
agtggctgcctgtgactgggggtttcgtttttggtgagactcaaacccag
ggcttcgcacaccctgggcatctgtgctactgttgagctacatccccggc
ttcgatgaggatgttctgcaagggtaatctggtgatgctaatctgttata
caactgtatacatttgtcagagctcaatgaaagaattttacttaaaaaga
tgaatgacgcctggtattgatggcccacaccttaatccaagcactcggga
ggcagaaggcagggaattctctgagtcaaggtcaacttgtcttacagagc
gagttccaggacagccaatagagagaactctgtcttgagagtgttatcct
ctagac
gaattccagacctagaatctgcatggcaggagaaaaagaccctcctgagg
gctttcctcctgagtgccaccatagtaggcacgcacatgtacacacatgc
atggaaacctcccactaaaacttcaccacttctaaaacatcaacgttcta
cacagcagaaaaagtcaggctcccaggcagtgatggccaagtctatctag
agcaagtagatcccgctgctgacatcctactccagtgatacacagtgttt
ccaagtacttcacaaggcagcactcacgggcaacagtgaaaagcctcact
ttaaatgacttttattgcccaaacactattttctgttccatgtagatatt
tctcccaccattagttacaacaaaagttgatggactcatttcaggttaga
tcaaaatatttcctccattttttgaaaatagtcttaaagaagaatgtctc
aatgatatttaactcaatatggcgttggttcatgtaaactatgtgactag
atttaaaaatattcttgcctatgttccagacagatcatttttcagtcact
ataaatttgggactaacttcttgaaacaccaccagcaatactgatataat
gtaaaggttggtctctgcctctaggttctgataaacagctcctaaaatcc
ttgtattttcctgagggactggaattactcaatgtttttcatgccattct
tagggtttttgaccctgcttcctgacagtgcctgaaacccctgtcccctc
ctcagctatggtagtgctaagtgtcttctgtcctgcagcagacagagcgc
ttcaactcctgggcatttccagcccagaagcctcttctgttttactgagc
tgacttttggtgggatcatagggaggttcaaggcgatgctattcacaaga
acatcaggccttgattagccttcaattctcaccacactctccccaatctc
aagcaacctccttaaagcccctgcatgcatacactcagaggcctctggtg
ggcaacacatccatgttccaggaagtggaggacccttccagactcacttc
atatctggctgtcatccacatctttacagcacgttgtaaatacaagttaa
aggccttttctgactctgtgattcggtagactggagtagggggtcatgga
ccctcagctacaact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_33347724_33348682
seq2: B6Ng01-203C11.b_44_999

seq1  GAATTCTTTCCTCCCTAAGTTGATTTTGGTCATGGTGTTTCTTCATAGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTCCTCCCTAAGTTGATTTTGGTCATGGTGTTTCTTCATAGCA  50

seq1  ATGGCAACCCTAATTGTGTTTGCTTGCTTGATTTAGCGTGGCTCCACACC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCAACCCTAATTGTGTTTGCTTGCTTGATTTAGCGTGGCTCCACACC  100

seq1  CTTCTGCAGAAGCAAAGCTTTTTGCCTTACTGAAATACTTTGAATACTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGCAGAAGCAAAGCTTTTTGCCTTACTGAAATACTTTGAATACTTC  150

seq1  TGGAGACCTCAGACCTGTTTCTTACAATAGTCACTTGGGAAACAATCTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGACCTCAGACCTGTTTCTTACAATAGTCACTTGGGAAACAATCTGG  200

seq1  CAATTTTATTTTATTTTTTTATAAAGCTGACCATCCCTTAATAAAGGACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTTTATTTTATTTTTTTATAAAGCTGACCATCCCTTAATAAAGGACT  250

seq1  TAGCAGTCCTATTCCTATTGAGTAACTGAAGAGTTCATCAACTGTAAATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAGTCCTATTCCTATTGAGTAACTGAAGAGTTCATCAACTGTAAATC  300

seq1  AATCCAGGAGCAATCCATGAAATGCTCTTCAGATATAAAAGAGCAGAGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCAGGAGCAATCCATGAAATGCTCTTCAGATATAAAAGAGCAGAGCT  350

seq1  ACTGCCACAAGCGAAGAAAGCCATGGAGGAGACTAAACTTGTAAGAGAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCCACAAGCGAAGAAAGCCATGGAGGAGACTAAACTTGTAAGAGAAG  400

seq1  TCGGATCCAAAGGGCTGCACGCTTAGCTGGAGTGGTGGCAGGGCCTGTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGGATCCAAAGGGCTGCACGCTTAGCTGGAGTGGTGGCAGGGCCTGTAA  450

seq1  TTCCAGAATTTGACCAAAGAAGGGTGAGTTCAAGTCCATCCTGGGCTACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAGAATTTGACCAAAGAAGGGTGAGTTCAAGTCCATCCTGGGCTACA  500

seq1  TAGGGAAACTACTGCAAAAACAAGAACCAACCAAAAAAAGCTTGTTCTAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGAAACTACTGCAAAAACAAGAACCAACCAAAAAAAGCTTGTTCTAG  550

seq1  GATCCTGCTCACATGCTGCCTTTCAAAACCCGCAGGGACAGGAAGCCATC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCTGCTCACATGCTGCCTTTCAAAACCCGCAGGGACAGGAAGCCATC  600

seq1  AGTGGCTGCCTGTGACTGGGGGTTTCGTTTTTGGTGAGACTCAAACCCAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGCTGCCTGTGACTGGGGGTTTCGTTTTTGGTGAGACTCAAACCCAG  650

seq1  GGCTTCGCACACCCTGGGCATCTGTGCTACTGTTGAGCTACATCCCCGGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTCGCACACCCTGGGCATCTGTGCTACTGTTGAGCTACATCCCCGGC  700

seq1  TTCGATGAGGATGTTCTGCAAGGGTAATCTGGTGATGCTAATCTGTTATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGATGAGGATGTTCTGCAAGGGTAATCTGGTGATGCTAATCTGTTATA  750

seq1  CAACTGTATACATTTGTCAGAGCTCAATGAAAGAATTTTACTTAAAAAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTGTATACATTTGTCAGAGCTCAATGAAAGAATTTTACTTAAAAAGA  800

seq1  TGAATGACGCCTGGTATTGATGGCCCACACCTTAATCCAAGCACTCGGGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATGACGCCTGGTATTGATGGCCCACACCTTAATCCAAGCACTCGGGA  850

seq1  GGCAG-AGGCAGGGGAATCTCTGAGTTCAAGGTCAACTTGTTTTACAGAG  899
      ||||| |||||||| | |||||||| ||||||||||||||| ||||||||
seq2  GGCAGAAGGCAGGGAATTCTCTGAG-TCAAGGTCAACTTGTCTTACAGAG  899

seq1  CGAGTTCCAGGACAGCCAATACAGAGAAACTCTGTCTTTAAAAAGTGTTA  949
      ||||||||||||||||||||| |||| |||||||||||   | |||||||
seq2  CGAGTTCCAGGACAGCCAATAGAGAG-AACTCTGTCTT--GAGAGTGTTA  946

seq1  TCCTCTATAC  959
      ||||||| ||
seq2  TCCTCTAGAC  956

seq1: chr16_33471057_33472228
seq2: B6Ng01-203C11.g_65_1229 (reverse)

seq1  AGTTGTAAGCTGAGGGTTCCCATGACCCCCTACTTCAGTCTTACGATTCA  50
      |||||| ||||||||||  ||||||||||||||| ||||||  ||| |||
seq2  AGTTGT-AGCTGAGGGT--CCATGACCCCCTACTCCAGTCTACCGAATCA  47

seq1  CAGAACTCAGAAAAGCCCTTT-ACTTGTATTTACAACGTTGCTGTAAAGG  99
      ||| | ||||||||| ||||| |||||||||||||||| ||||||||| |
seq2  CAG-AGTCAGAAAAGGCCTTTAACTTGTATTTACAACG-TGCTGTAAA-G  94

seq1  ATGTGGATGAACAGCCAGATATGAAGTGAGTCTGGAAGGGTCCTCCACTT  149
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGGATG-ACAGCCAGATATGAAGTGAGTCTGGAAGGGTCCTCCACTT  143

seq1  CCTGGAACATGGATGTGTTGCCCACCAGAGGCCTCTGAGTGTTATGCATG  199
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  CCTGGAACATGGATGTGTTGCCCACCAGAGGCCTCTGAGTG-TATGCATG  192

seq1  CAGGGGCTTTAAGGAGGTTGCTTGAGATTGGGGAGAGTGTGGTGAGAATT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGGCTTTAAGGAGGTTGCTTGAGATTGGGGAGAGTGTGGTGAGAATT  242

seq1  GAAGGCTAATCAAGGCCTGATGTTCTTGTGAATAGCATCGCCTTGAACCT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGCTAATCAAGGCCTGATGTTCTTGTGAATAGCATCGCCTTGAACCT  292

seq1  CCCTATGATCCCACCAAAAGTCAGCTCAGTAAAACAGAAGAGGCTTCTGG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTATGATCCCACCAAAAGTCAGCTCAGTAAAACAGAAGAGGCTTCTGG  342

seq1  GCTGGAAATGCCCAGGAGTTGAAGCGCTCTGTCTGCTGCAGGACAGAAGA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGAAATGCCCAGGAGTTGAAGCGCTCTGTCTGCTGCAGGACAGAAGA  392

seq1  CACTTAGCACTACCATAGCTGAGGAGGGGACAGGGGTTTCAGGCACTGTC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTAGCACTACCATAGCTGAGGAGGGGACAGGGGTTTCAGGCACTGTC  442

seq1  AGGAAGCAGGGTCAAAAACCCTAAGAATGGCATGAAAAACATTGAGTAAT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGCAGGGTCAAAAACCCTAAGAATGGCATGAAAAACATTGAGTAAT  492

seq1  TCCAGTCCCTCAGGAAAATACAAGGATTTTAGGAGCTGTTTATCAGAACC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGTCCCTCAGGAAAATACAAGGATTTTAGGAGCTGTTTATCAGAACC  542

seq1  TAGAGGCAGAGACCAACCTTTACATTATATCAGTATTGCTGGTGGTGTTT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGGCAGAGACCAACCTTTACATTATATCAGTATTGCTGGTGGTGTTT  592

seq1  CAAGAAGTTAGTCCCAAATTTATAGTGACTGAAAAATGATCTGTCTGGAA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAAGTTAGTCCCAAATTTATAGTGACTGAAAAATGATCTGTCTGGAA  642

seq1  CATAGGCAAGAATATTTTTAAATCTAGTCACATAGTTTACATGAACCAAC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGGCAAGAATATTTTTAAATCTAGTCACATAGTTTACATGAACCAAC  692

seq1  GCCATATTGAGTTAAATATCATTGAGACATTCTTCTTTAAGACTATTTTC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATATTGAGTTAAATATCATTGAGACATTCTTCTTTAAGACTATTTTC  742

seq1  AAAAAATGGAGGAAATATTTTGATCTAACCTGAAATGAGTCCATCAACTT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAATGGAGGAAATATTTTGATCTAACCTGAAATGAGTCCATCAACTT  792

seq1  TTGTTGTAACTAATGGTGGGAGAAATATCTACATGGAACAGAAAATAGTG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTGTAACTAATGGTGGGAGAAATATCTACATGGAACAGAAAATAGTG  842

seq1  TTTGGGCAATAAAAGTCATTTAAAGTGAGGCTTTTCACTGTTGCCCGTGA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGGCAATAAAAGTCATTTAAAGTGAGGCTTTTCACTGTTGCCCGTGA  892

seq1  GTGCTGCCTTGTGAAGTACTTGGAAACACTGTGTATCACTGGAGTAGGAT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTGCCTTGTGAAGTACTTGGAAACACTGTGTATCACTGGAGTAGGAT  942

seq1  GTCAGCAGCGGGATCTACTTGCTCTAGATAGACTTGGCCATCACTGCCTG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGCAGCGGGATCTACTTGCTCTAGATAGACTTGGCCATCACTGCCTG  992

seq1  GGAGCCTGACTTTTTCTGCTGTGTAGAACGTTGATGTTTTAGAAGTGGTG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCCTGACTTTTTCTGCTGTGTAGAACGTTGATGTTTTAGAAGTGGTG  1042

seq1  AAGTTTTAGTGGGAGGTTTCCATGCATGTGTGTACATGTGCGTGCCTACT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTTTAGTGGGAGGTTTCCATGCATGTGTGTACATGTGCGTGCCTACT  1092

seq1  ATGGTGGCACTCAGGAGGAAAGCCCTCAGGAGGGTCTTTTTCTCCTGCCA  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTGGCACTCAGGAGGAAAGCCCTCAGGAGGGTCTTTTTCTCCTGCCA  1142

seq1  TGCAGATTCTAGGTCTGGAATTC  1172
      |||||||||||||||||||||||
seq2  TGCAGATTCTAGGTCTGGAATTC  1165