BAC Information

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BAC

Clone NameB6Ng01-204B05
Chromosome16 (Build37)
Map Location 18,431,429 - 18,559,681
singlet/doubletdoublet
Overlap geneTxnrd2, Gnb1l
Upstream geneCrkl, Aifm3, Lztr1, Thap7, 4930451C15Rik, P2rxl1, Slc7a4, Smpd4, Pcqap, EG433050, Map1lc3-ps8, EG665892, LOC100042830, Klhl22, Scarf2, Car15, Dgcr2, Tssk1, Tssk2, Es2el, Gscl, Slc25a1, Vpreb2, Dgcr6, Prodh, Rtn4r, EG665975, Zdhhc8, Ranbp1, Htf9c, Dgcr8, D16H22S680E, LOC100042884, Arvcf, Comt
Downstream geneTbx1, Gp1bb, Sept5, LOC622795, Cldn5, Cdc45l, Ufd1l, 2510002D24Rik, Mrpl40, Hira, Igl, Igl-C1, Igl-J1, Igl-C3, Igl-J3p, Igl-J3, Igl-V1, Igl-C4, Igl-J4, Igl-C2, Igl-J2, Igl-V3, Igl-V2, Olfr164, Olfr165, Olfr166, Olfr167, Olfr168
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-204B05.bB6Ng01-204B05.g
ACCGA024120GA024121
length936447
definitionB6Ng01-204B05.b B6Ng01-204B05.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(18,558,981 - 18,559,681)(18,431,429 - 18,431,881)
sequence
gaattcatgaatgctccagcatgatgggcacagtgtcaccggactttaat
ctcaacactcaggagggagaggcaggcaggtctctgagtttggatccagt
gtggtccaaatagcaagtttccaaacagccaggactatatacagaaacca
tatatctcaaaacaaaacaaaacaacaacaacaaaacaacccaggattct
tcactgtataaaacacaaccctctgggctgctatggcagcacacgtcatc
ctggttcttaggagacagaggcagggtcaggagttcaaagtcatccttgg
ctacatagtaagactgagggaagtttgggctgcatgaaatgtctcaaaaa
ttaaaaataagggggctggaaagatggctcagccattaagagcacttgct
gttcttctagaggacccatattcgattcctgtcacccacattttacctgt
cagccatctgtaactgcagtttcaggggatctgacacctccttctggcct
ctgctggcactgaacacacatggttaacaggcacacacaaaacacccaca
cacataaaatacaaatatttttaaaatattaaaataaaagaaaatgtatg
aaagaatgaaaaaaaagaataaaagaatatcagaaacaactgcagcaggg
cggcagagcaaaagggctatacaagagacacacctacatcttgaagggcc
aggaaggattaagaaaacctaaaccttggtctaagccacactaacagctg
gttgatagacctcttttccagaaagtgactgaagaaaactaggaaggtaa
ttacttttattggttgtttctaaagctggcttttaaatgcataaagcaag
aaacaatgggggatggagaagagggtaagggcagggccagctcagctctc
actatgggcctaggccacattattgtgcctaccggg
tctagggaaactggagcagctgggtatatggtgtatttcttttggggatt
tcctccccgtccattttctcagcaatattttgtagcttgttctctccccc
acccccatctctttatttatttttcttccccctccccacttgctccaggc
ccctcttgctccagccccatttgctctggcccatagtttttttgtttttt
gttttgtttctcattaggaatggttgtgagccaccatgtggttgctggga
tttgaactcatgacctctggaaggccggtcagtgctcttaaccactgaaa
catctcaccagccttttttttttttttttttttaagatttttggtttggt
ttggtttggtttggttttggttttttcgagacagggtttctctgtgtagc
cctggctgtcctagaactcactctatagaccaggctggcctcgaact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_18558981_18559681
seq2: B6Ng01-204B05.b_47_747 (reverse)

seq1  TGGCCCTTCAAGATGTAGGTGTGTCTCTTGTATAGCCCTTTTGCTCTGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCCTTCAAGATGTAGGTGTGTCTCTTGTATAGCCCTTTTGCTCTGCC  50

seq1  GCCCTGCTGCAGTTGTTTCTGATATTCTTTTATTCTTTTTTTTCATTCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTGCTGCAGTTGTTTCTGATATTCTTTTATTCTTTTTTTTCATTCTT  100

seq1  TCATACATTTTCTTTTATTTTAATATTTTAAAAATATTTGTATTTTATGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATACATTTTCTTTTATTTTAATATTTTAAAAATATTTGTATTTTATGT  150

seq1  GTGTGGGTGTTTTGTGTGTGCCTGTTAACCATGTGTGTTCAGTGCCAGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGGGTGTTTTGTGTGTGCCTGTTAACCATGTGTGTTCAGTGCCAGCA  200

seq1  GAGGCCAGAAGGAGGTGTCAGATCCCCTGAAACTGCAGTTACAGATGGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCCAGAAGGAGGTGTCAGATCCCCTGAAACTGCAGTTACAGATGGCT  250

seq1  GACAGGTAAAATGTGGGTGACAGGAATCGAATATGGGTCCTCTAGAAGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGGTAAAATGTGGGTGACAGGAATCGAATATGGGTCCTCTAGAAGAA  300

seq1  CAGCAAGTGCTCTTAATGGCTGAGCCATCTTTCCAGCCCCCTTATTTTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAAGTGCTCTTAATGGCTGAGCCATCTTTCCAGCCCCCTTATTTTTA  350

seq1  ATTTTTGAGACATTTCATGCAGCCCAAACTTCCCTCAGTCTTACTATGTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTGAGACATTTCATGCAGCCCAAACTTCCCTCAGTCTTACTATGTA  400

seq1  GCCAAGGATGACTTTGAACTCCTGACCCTGCCTCTGTCTCCTAAGAACCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAAGGATGACTTTGAACTCCTGACCCTGCCTCTGTCTCCTAAGAACCA  450

seq1  GGATGACGTGTGCTGCCATAGCAGCCCAGAGGGTTGTGTTTTATACAGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGACGTGTGCTGCCATAGCAGCCCAGAGGGTTGTGTTTTATACAGTG  500

seq1  AAGAATCCTGGGTTGTTTTGTTGTTGTTGTTTTGTTTTGTTTTGAGATAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATCCTGGGTTGTTTTGTTGTTGTTGTTTTGTTTTGTTTTGAGATAT  550

seq1  ATGGTTTCTGTATATAGTCCTGGCTGTTTGGAAACTTGCTATTTGGACCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTTTCTGTATATAGTCCTGGCTGTTTGGAAACTTGCTATTTGGACCA  600

seq1  CACTGGATCCAAACTCAGAGACCTGCCTGCCTCTCCCTCCTGAGTGTTGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGGATCCAAACTCAGAGACCTGCCTGCCTCTCCCTCCTGAGTGTTGA  650

seq1  GATTAAAGTCCGGTGACACTGTGCCCATCATGCTGGAGCATTCATGAATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTAAAGTCCGGTGACACTGTGCCCATCATGCTGGAGCATTCATGAATT  700

seq1  C  701
      |
seq2  C  701

seq1: chr16_18431429_18431881
seq2: B6Ng01-204B05.g_66_518

seq1  GAATTCTCTAGGGAAACTGGAGCAGCTGGGTATATGGTGTATTTCTTTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTAGGGAAACTGGAGCAGCTGGGTATATGGTGTATTTCTTTTG  50

seq1  GGGATTTCCTCCCCGTCCATTTTCTCAGCAATATTTTGTAGCTTGTTCTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATTTCCTCCCCGTCCATTTTCTCAGCAATATTTTGTAGCTTGTTCTC  100

seq1  TCCCCCACCCCCATCTCTTTATTTATTTTTCTTCCCCCTCCCCACTTGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCCACCCCCATCTCTTTATTTATTTTTCTTCCCCCTCCCCACTTGCT  150

seq1  CCAGGCCCCTCTTGCTCCAGCCCCATTTGCTCTGGCCCATAGTTTTTTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGCCCCTCTTGCTCCAGCCCCATTTGCTCTGGCCCATAGTTTTTTTG  200

seq1  TTTTTTGTTTTGTTTCTCATTAGGAATGGTTGTGAGCCACCATGTGGTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTGTTTTGTTTCTCATTAGGAATGGTTGTGAGCCACCATGTGGTTG  250

seq1  CTGGGATTTGAACTCATGACCTCTGGAAGGCCGGTCAGTGCTCTTAACCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGATTTGAACTCATGACCTCTGGAAGGCCGGTCAGTGCTCTTAACCA  300

seq1  CTGAAACATCTCACCAGCCTTTTTTTTTTTTTTTTTTTTAAGATTTTTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAACATCTCACCAGCCTTTTTTTTTTTTTTTTTTTTAAGATTTTTGG  350

seq1  TTTGGTTTGGTTTGGTTTGGTTTTGGTTTTTTCGAGACAGGGTTTCTCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGTTTGGTTTGGTTTGGTTTTGGTTTTTTCGAGACAGGGTTTCTCTG  400

seq1  TGTAGCCCTGGCTGTCCTAGAACTCACTCTATAGACCAGGCTGGCCTCGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGCCCTGGCTGTCCTAGAACTCACTCTATAGACCAGGCTGGCCTCGA  450

seq1  ACT  453
      |||
seq2  ACT  453