BAC Information

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BAC

Clone NameB6Ng01-204N03
Chromosome4 (Build37)16 (Build37)
Map Location 75,878,631 - 75,878,66142,718,245 - 42,719,347
singlet/doubletsingletsinglet
Overlap genePtprd
Upstream gene3110001D03Rik, LOC623529, LOC100039833, LOC100039884, LOC667845
Downstream geneLOC667858, LOC667862
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-204N03.bB6Ng01-204N03.g
ACCGA024658GA024659
length2751,141
definitionB6Ng01-204N03.b B6Ng01-204N03.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(75,878,631 - 75,878,661)(42,718,245 - 42,719,347)
sequence
gaattcttatgcactctttgtgggagtataaaatgtgcagccactatgga
aatgagtgtggtgttttctttaaaaatagaaatatagtgtgatcctacta
tatcgcttttgtgtatatgcttgaaagactacatgttgccacagagatat
ttacacatttttgtttatagctgttcattttaaacaaggtagaaaatgga
agcaacctagatgttcatcaattgatggatagataatgtaatatatattt
gtgtgtgtgtgtgtgtgtgtgtgtg
gaattcttgttctaactaagcaaggttctgagaaaagaaaagaaaaaaaa
gatattaatctgagcattgatctcatttggcttttgttttaggaaaatct
gtttcacatcactcttgtacctttctattggtaaagtacaggagaaatta
tcttcaaggctaccaggtaacctcttttggccctgggatagaaacctcaa
gaatatgacatgacatagattggaggcaggaacattggcagtgaaatgca
tcctgggacaattagggaaggaagggtcatgaaaaagcaaagagaactca
accaacaggtctcaagaaagagcaagctagtgttgatttttctgccagtg
tgcagtcactcactgaggtcacacctgaggtgaagtccagtatcaccaac
tattttagcattctgtatctgaaactgtgcagtaggaagagccccaagtt
gaaacatgacctcttctcgaacagcaccacaccctccatttcggtgcctc
tacaggaataagcacgatcatttcttctgcttgacaagtgtgatccacaa
atctctaaagaattctactgtgctaaatattcacgagggtgtctgacggg
gtaaggctagggagattacgcagatacagaagagagccaggcaagacata
taaaatgtgttcttgttcacgttgacaaaacaggaaggaagttcactcat
atatatgaaagattttactgggacttatgggtaaaataaatttaacatcc
tgattattaacatttttggcactaattccaacaaacaataagattacaga
gacagtgttgtgtggctcataacaacatgattcccttcctatttaacttc
attttacttaaaacatttttttttttttttgcgtaaagttttttggagaa
agttatttctggtttcctaagtgaggagagagggccccactcccttttct
ttcatgggtgtggatgaatttcagtccaaacgcatcccagtttctgggaa
aatgggcaagtgagacactttgttggccaatatgaattggtaatagttct
tgactccagaaaatagctgttgccaatagccaactgcaatggagcccttg
ggaagtggatgcaggtctcctttcttcttctctctgtctct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_75878631_75878661
seq2: B6Ng01-204N03.b_290_320 (reverse)

seq1  CACACACACACACACACACACACACAAATAT  31
      |||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACACACAAATAT  31

seq1: chr16_42718245_42719347
seq2: B6Ng01-204N03.g_66_1206 (reverse)

seq1  AGAGAGAGAGAGA---------GAGA-CTGCA-CCACCTCCCAAGGGCTT  39
      ||||| |||||||         |||| ||||| |||| ||||||||||| 
seq2  AGAGACAGAGAGAAGAAGAAAGGAGACCTGCATCCACTTCCCAAGGGCTC  50

seq1  CAATGCAGTT-GCTA-TGGCAACA-CTA-TATCT-GAGTC-AGAACTATT  83
      || ||||||| |||| |||||||| ||| | ||| ||||| |||||||||
seq2  CATTGCAGTTGGCTATTGGCAACAGCTATTTTCTGGAGTCAAGAACTATT  100

seq1  AACAA-TCACCATGG-CAAC-AAGTGTCTCACTTG-CCATTT--CCAGAA  127
      | ||| |||   ||| |||| |||||||||||||| ||||||  ||||||
seq2  ACCAATTCATATTGGCCAACAAAGTGTCTCACTTGCCCATTTTCCCAGAA  150

seq1  ACT-GGATGCGTTTGGACTGAAA-TCAT-CACA-CCATG-AAGAAA--GG  170
      ||| ||||||||||||||||||| |||| |||| ||||| ||||||  ||
seq2  ACTGGGATGCGTTTGGACTGAAATTCATCCACACCCATGAAAGAAAAGGG  200

seq1  GGTGGGG-CCTCTCT-CTCAC-TAGGAAA-CAGAAAT-ACTTTCTCC-AA  214
       |||||| ||||||| ||||| ||||||| ||||||| ||||||||| ||
seq2  AGTGGGGCCCTCTCTCCTCACTTAGGAAACCAGAAATAACTTTCTCCAAA  250

seq1  ATACCTTACGC--AAAAAAAAAAAAATGTTTTAAGTAAAATGAAGTTAAA  262
      | || ||||||  |||||||||||||||||||||||||||||||||||||
seq2  AAACTTTACGCAAAAAAAAAAAAAAATGTTTTAAGTAAAATGAAGTTAAA  300

seq1  TAGGAAGGGAATCATGTTGTTATGAGCCACACAACACTGTCTCTGTAATC  312
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAAGGGAATCATGTTGTTATGAGCCACACAACACTGTCTCTGTAATC  350

seq1  TTATTGTTTGTTGGAATTAGTGCCAAAAATGTTAATAATCAGGATGTTAA  362
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTGTTTGTTGGAATTAGTGCCAAAAATGTTAATAATCAGGATGTTAA  400

seq1  ATTTATTTTACCCATAAGTCCCAGTAAAATCTTTCATATATATGAGTGAA  412
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATTTTACCCATAAGTCCCAGTAAAATCTTTCATATATATGAGTGAA  450

seq1  CTTCCTTCCTGTTTTGTCAACGTGAACAAGAACACATTTTATATGTCTTG  462
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTTCCTGTTTTGTCAACGTGAACAAGAACACATTTTATATGTCTTG  500

seq1  CCTGGCTCTCTTCTGTATCTGCGTAATCTCCCTAGCCTTACCCCGTCAGA  512
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGCTCTCTTCTGTATCTGCGTAATCTCCCTAGCCTTACCCCGTCAGA  550

seq1  CACCCTCGTGAATATTTAGCACAGTAGAATTCTTTAGAGATTTGTGGATC  562
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCTCGTGAATATTTAGCACAGTAGAATTCTTTAGAGATTTGTGGATC  600

seq1  ACACTTGTCAAGCAGAAGAAATGATCGTGCTTATTCCTGTAGAGGCACCG  612
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTTGTCAAGCAGAAGAAATGATCGTGCTTATTCCTGTAGAGGCACCG  650

seq1  AAATGGAGGGTGTGGTGCTGTTCGAGAAGAGGTCATGTTTCAACTTGGGG  662
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGGAGGGTGTGGTGCTGTTCGAGAAGAGGTCATGTTTCAACTTGGGG  700

seq1  CTCTTCCTACTGCACAGTTTCAGATACAGAATGCTAAAATAGTTGGTGAT  712
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTCCTACTGCACAGTTTCAGATACAGAATGCTAAAATAGTTGGTGAT  750

seq1  ACTGGACTTCACCTCAGGTGTGACCTCAGTGAGTGACTGCACACTGGCAG  762
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGACTTCACCTCAGGTGTGACCTCAGTGAGTGACTGCACACTGGCAG  800

seq1  AAAAATCAACACTAGCTTGCTCTTTCTTGAGACCTGTTGGTTGAGTTCTC  812
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATCAACACTAGCTTGCTCTTTCTTGAGACCTGTTGGTTGAGTTCTC  850

seq1  TTTGCTTTTTCATGACCCTTCCTTCCCTAATTGTCCCAGGATGCATTTCA  862
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTTTTTCATGACCCTTCCTTCCCTAATTGTCCCAGGATGCATTTCA  900

seq1  CTGCCAATGTTCCTGCCTCCAATCTATGTCATGTCATATTCTTGAGGTTT  912
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCAATGTTCCTGCCTCCAATCTATGTCATGTCATATTCTTGAGGTTT  950

seq1  CTATCCCAGGGCCAAAAGAGGTTACCTGGTAGCCTTGAAGATAATTTCTC  962
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCCCAGGGCCAAAAGAGGTTACCTGGTAGCCTTGAAGATAATTTCTC  1000

seq1  CTGTACTTTACCAATAGAAAGGTACAAGAGTGATGTGAAACAGATTTTCC  1012
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTACTTTACCAATAGAAAGGTACAAGAGTGATGTGAAACAGATTTTCC  1050

seq1  TAAAACAAAAGCCAAATGAGATCAATGCTCAGATTAATATCTTTTTTTTC  1062
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAACAAAAGCCAAATGAGATCAATGCTCAGATTAATATCTTTTTTTTC  1100

seq1  TTTTCTTTTCTCAGAACCTTGCTTAGTTAGAACAAGAATTC  1103
      |||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTTTTCTCAGAACCTTGCTTAGTTAGAACAAGAATTC  1141