BAC Information

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BAC

Clone NameB6Ng01-205K18
Chromosome16 (Build37)
Map Location 91,492,937 - 91,664,819
singlet/doubletdoublet
Overlap geneIfnar1, LOC665939, LOC665947, Ifngr2, Tmem50b, ORF28, Gart, Son
Upstream geneHunk, 2610039C10Rik, Mrap, 4921511H13Rik, 4931408A02Rik, LOC665863, 1110004E09Rik, 4930534H18Rik, Synj1, 1810007M14Rik, 4932438H23Rik, H3f3a-ps2, Olig2, Olig1, Ifnar2, Il10rb
Downstream geneDonson, Cryzl1, LOC100040653, Itsn1, Atp5o, Mrps6, Slc5a3, Kcne2, 1190017O12Rik, 4930563D23Rik, Kcne1, Dscr1, 2410124H12Rik, Clic6, Runx1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-205K18.bB6Ng01-205K18.g
ACCGA025291GA025292
length803839
definitionB6Ng01-205K18.b B6Ng01-205K18.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(91,492,937 - 91,493,734)(91,663,991 - 91,664,819)
sequence
gaattctctttactggacacaaatgtgtatatcaaaacacagtttcgtgt
cagagcagaggaagggaacagcacatcttcgtggaatgaggttgatccgt
ttattccattctacacaggtaagaagccgccatggctggctatattgttc
ctctcttcctctctaatgagcattacaagcgcagttctctggtgcagctc
ccttctgcagaggcctcttccctggccttctgtattagtggctttccccg
tgtggttatcaagagccttttagcaggtccataaagccagggctcttttc
ctcggatttcagagatgttattggcatgttcactcggattgtctcttatc
cacacaatggacatgtgtgtaacttactgcagaggctgagtagtccacgg
gaatgagttttttgtttttaaagtagagcaatttcatgccttcatgtttc
tggggtttgggggtttgtttgtttgtttgtttttcttttttaaaagtact
tttgccagactgtggttgtgtaaacctttaacccaagccatggggaaaca
gagttaggtagacctctgagttccaggacagcaagagaaaccctgtctca
aaaacaaacaaacaaaaaagtgtatattttaacgatgtacccagtagttt
tttcattctactcttgtaatggtcaaatgttgctaaatgtgaaaaagata
gaacctcatgtaatcagacgcccttcgacagcctcagttctcttttaagc
tttatttttatttatgcatatgtgagatgtgtatgctacacattatgtgg
ggg
gaattccaatgcagtctaaaggaaagcttccttttattttgtcagtgcca
ggagttaaccctacatcctcacacatcctaggcacacacactacacagaa
caactctcccggccctatgttcaggagatgccgtcactactcatcaccac
agttaaactccacatgggttttaaaacagccccacaagccgtgctgcttc
atcagtccatagcactttactaatactcacattcaaattgaaaaaaatgg
gcttgggttcactgagtttaaagggatgatgataaaaaggaggttcttct
tcctcttcatccgaaacatgaggtttattcactattacatcatcatcttc
tttactctgtgcaatctgtttgcatttctttaaagtaaaaacaaacaaaa
gatgaatatggtttacaaaaacagcatgtaattttaaaaaaaaatattgt
aagatcaatttcaagtaatcaacattttatgatagcttataaaaccgtaa
tttagatcattcgctattatttaaacacacaatggctgctcagtcagtca
acaacatttattgagcacctactatgtgcagagcactgtactgggcactg
tcttgggaaaaaaatacaaaaaaaaaaaaaaaccaacaaaacaaatcaaa
aaaaaattaggaaggaaggaagagataagaaaaagaagaaaagaaaagat
aaaaagtggaaaagacatggtcccctgctccaaaaggagcttacaatcta
atacgaggacaaatagtatcataccctatgaagtaatttgaagaaccttt
ttacagagcaacccaatacaagtgcaaactgattataat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_91492937_91493734
seq2: B6Ng01-205K18.b_43_844

seq1  GAATTCTCTTTACTGGACACAAATGTGTATATCAAAACACAGTTTCGTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTTTACTGGACACAAATGTGTATATCAAAACACAGTTTCGTGT  50

seq1  CAGAGCAGAGGAAGGGAACAGCACATCTTCGTGGAATGAGGTTGATCCGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGCAGAGGAAGGGAACAGCACATCTTCGTGGAATGAGGTTGATCCGT  100

seq1  TTATTCCATTCTACACAGGTAAGAAGCCGCCATGGCTGGCTATATTGTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTCCATTCTACACAGGTAAGAAGCCGCCATGGCTGGCTATATTGTTC  150

seq1  CTCTCTTCCTCTCTAATGAGCATTACAAGCGCAGTTCTCTGGTGCAGCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTTCCTCTCTAATGAGCATTACAAGCGCAGTTCTCTGGTGCAGCTC  200

seq1  CCTTCTGCAGAGGCCTCTTCCCTGGCCTTCTGTATTAGTGGCTTTCCCCG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCTGCAGAGGCCTCTTCCCTGGCCTTCTGTATTAGTGGCTTTCCCCG  250

seq1  TGTGGTTATCAAGAGCCTTTTAGCAGGTCCATAAAGCCAGGGCTCTTTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGTTATCAAGAGCCTTTTAGCAGGTCCATAAAGCCAGGGCTCTTTTC  300

seq1  CTCGGATTTCAGAGATGTTATTGGCATGTTCACTCGGATTGTCTCTTATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGGATTTCAGAGATGTTATTGGCATGTTCACTCGGATTGTCTCTTATC  350

seq1  CACACAATGGACATGTGTGTAACTTACTGCAGAGGCTGAGTAGTCCACGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACAATGGACATGTGTGTAACTTACTGCAGAGGCTGAGTAGTCCACGG  400

seq1  GAATGAGTTTTTTGTTTTTAAAGTAGAGCAATTTCATGCCTTCATGTTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGAGTTTTTTGTTTTTAAAGTAGAGCAATTTCATGCCTTCATGTTTC  450

seq1  TGGGGTTTGGGGGTTTGTTTGTTTGTTTGTTTTTCTTTTTTAAAAGTACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGTTTGGGGGTTTGTTTGTTTGTTTGTTTTTCTTTTTTAAAAGTACT  500

seq1  TTTGCCAGACTGTGGTTGTGTAAACCTTTAACCCAAGCCATGGGGAAACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCCAGACTGTGGTTGTGTAAACCTTTAACCCAAGCCATGGGGAAACA  550

seq1  GAGTTAGGTAGACCTCTGAGTTCCAGGACAGCAAGAGAAACCCTGTCTCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTAGGTAGACCTCTGAGTTCCAGGACAGCAAGAGAAACCCTGTCTCA  600

seq1  AAAACAAACAAACAAAAAAGTGTATATTTTAACGATGTACCCAGTAGTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAAACAAACAAAAAAGTGTATATTTTAACGATGTACCCAGTAGTTT  650

seq1  TTTCATTCTACTCTTGTAATGGTC-AATG-TGCTAAATGTG-AAAAGATA  697
      |||||||||||||||||||||||| |||| ||||||||||| ||||||||
seq2  TTTCATTCTACTCTTGTAATGGTCAAATGTTGCTAAATGTGAAAAAGATA  700

seq1  GAACC-CATGTAATCAGACGCCCTTCGACAGCCTCAGGTTCTCTTTTAAG  746
      ||||| |||||||||||||||||||||||||||||| |||||||||||||
seq2  GAACCTCATGTAATCAGACGCCCTTCGACAGCCTCA-GTTCTCTTTTAAG  749

seq1  CTTTATTTTTATTTATGCATATGTGAGATGTGTATGCTACACA-TATGTG  795
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  CTTTATTTTTATTTATGCATATGTGAGATGTGTATGCTACACATTATGTG  799

seq1  GGG  798
      |||
seq2  GGG  802

seq1: chr16_91663991_91664819
seq2: B6Ng01-205K18.g_75_913 (reverse)

seq1  ATTAT-ATCAGTTTGCACTTGTTATTGTGTTGCTCTGTAAAAAGGTTCTT  49
      ||||| ||||||||||||||| ||||| ||||||||||||||||||||||
seq2  ATTATAATCAGTTTGCACTTG-TATTGGGTTGCTCTGTAAAAAGGTTCTT  49

seq1  C-AATTACTTCAT-GTGTATG-TACT-TTTGT-CTCGTATTAGATTGTAA  94
      | ||||||||||| | ||||| |||| ||||| |||||||||||||||||
seq2  CAAATTACTTCATAGGGTATGATACTATTTGTCCTCGTATTAGATTGTAA  99

seq1  GCTCC-TTTGGAGCA-GGGACCATGTC-TTTCCCTTTTTTATCTTTTTCT  141
      ||||| ||||||||| ||||||||||| |||||  |||||||| ||||||
seq2  GCTCCTTTTGGAGCAGGGGACCATGTCTTTTCCACTTTTTATC-TTTTCT  148

seq1  TTTCTTC-TTTTCTTTTCTCTTCCTTCCTTCCTATTTTTTTTTTGTTTTG  190
      ||||||| ||||||| |||||||||||||||||| |||||||||| ||||
seq2  TTTCTTCTTTTTCTTATCTCTTCCTTCCTTCCTAATTTTTTTTTGATTTG  198

seq1  TTTTGTTGGTTTTTTTTTTTTTTTGTA-TTTTTTCCCAAGACAGTGCCCA  239
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  TTTTGTTGGTTTTTTTTTTTTTTTGTATTTTTTTCCCAAGACAGTGCCCA  248

seq1  GTACAGTGCTCTGCACATAGTAGGTGCTCAATAAATGTTGTTGACTGACT  289
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACAGTGCTCTGCACATAGTAGGTGCTCAATAAATGTTGTTGACTGACT  298

seq1  GAGCAGCCATTGTGTGTTTAAATAATAGCGAATGATCTAAATTACGGTTT  339
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAGCCATTGTGTGTTTAAATAATAGCGAATGATCTAAATTACGGTTT  348

seq1  TATAAGCTATCAT-AAATGTTGATTACTTGAAATTGATCTTACAATATTT  388
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  TATAAGCTATCATAAAATGTTGATTACTTGAAATTGATCTTACAATATTT  398

seq1  TTTTTTAAAATTACATGCTGTTTTTGTAAACCATATTCATCTTTTGTTTG  438
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTAAAATTACATGCTGTTTTTGTAAACCATATTCATCTTTTGTTTG  448

seq1  TTTTTACTTTAAAGAAATGCAAACAGATTGCACAGAGTAAAGAAGATGAT  488
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTACTTTAAAGAAATGCAAACAGATTGCACAGAGTAAAGAAGATGAT  498

seq1  GATGTAATAGTGAATAAACCTCATGTTTCGGATGAAGAGGAAGAAGAACC  538
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTAATAGTGAATAAACCTCATGTTTCGGATGAAGAGGAAGAAGAACC  548

seq1  TCCTTTTTATCATCATCCCTTTAAACTCAGTGAACCCAAGCCCATTTTTT  588
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTTTATCATCATCCCTTTAAACTCAGTGAACCCAAGCCCATTTTTT  598

seq1  TCAATTTGAATGTGAGTATTAGTAAAGTGCTATGGACTGATGAAGCAGCA  638
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATTTGAATGTGAGTATTAGTAAAGTGCTATGGACTGATGAAGCAGCA  648

seq1  CGGCTTGTGGGGCTGTTTTAAAACCCATGTGGAGTTTAACTGTGGTGATG  688
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGCTTGTGGGGCTGTTTTAAAACCCATGTGGAGTTTAACTGTGGTGATG  698

seq1  AGTAGTGACGGCATCTCCTGAACATAGGGCCGGGAGAGTTGTTCTGTGTA  738
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGTGACGGCATCTCCTGAACATAGGGCCGGGAGAGTTGTTCTGTGTA  748

seq1  GTGTGTGTGCCTAGGATGTGTGAGGATGTAGGGTTAACTCCTGGCACTGA  788
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGCCTAGGATGTGTGAGGATGTAGGGTTAACTCCTGGCACTGA  798

seq1  CAAAATAAAAGGAAGCTTTCCTTTAGACTGCATTGGAATTC  829
      |||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATAAAAGGAAGCTTTCCTTTAGACTGCATTGGAATTC  839