BAC Information

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BAC

Clone NameB6Ng01-206F07
Chromosome2 (Build37)16 (Build37)
Map Location 171,739,061 - 171,739,49388,969,783 - 88,970,991
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC668955, LOC100043743
Downstream geneLOC100043744, Cbln4, Mc3r, 2010011I20Rik, Aurka, Cstf1, F730031O20Rik, 2410001C21Rik, A330041C17Rik, 1700029J11Rik, LOC629957, Tcfap2c, LOC100043750, Bmp7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-206F07.bB6Ng01-206F07.g
ACCGA025775GA025776
length9951,199
definitionB6Ng01-206F07.b B6Ng01-206F07.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(171,739,061 - 171,739,493)(88,969,783 - 88,970,991)
sequence
gaattctttgcatatattggatattagtcccctatgggatttaggattgg
taaagatcctttcccaatctgttggtggcctttttgtcttattgacagtg
tcttttgccttagagaaactttacaattttatctggtcccatttgttgat
tcttgatttttcagcattgctgttctgttcaggaattttccctctacacc
catatcttcgaggcttttccccactttctcctctatacattttagtgtct
ctggtttatgtggagttccttgatacacttagtcttgagctttgtacaag
gatataagaatggatcaattcacattattccacatgataactgccagttg
agccagtaccaattgctgaaaatgttgtctttttccaatggacagtttta
gctcctttgtcaaagatcacatgaccataggtgtgtgggttcatttctgg
gtcttcaattctattgcattgatctatctgtctgtcactttaccagtacc
atgcagtgtctgtttttttcttaagattataagccatttatctttattaa
atttttaaaatttattaggtattttcttcatttacatttccaatgctttc
ccaaaagtcctccttaacccccccccccccacacacacacacacacactc
ctacttcttggccctggagttctcctgtactgaggcatataaagtttgca
agaccaatgggcctttctttctaatgacggctgactaggccatcttctgc
tacatatgcagctagagacaccagctccggggtgtactagttagttcata
ttgtttgttccacatatagggttgcagatccctttagctccttgggtatt
ttctctagctcctccaccgggagccctgtgttccatccaatagatgactg
tgagcatccacttctgtgtttgctaggcccggcaaaagctcacaaagaca
gctatatctgggtctttcagcaaatcttgcctgtgtatgcaatgg
gaattccatctctatggaatacaaccacttcttcaggattccatgttaat
ggcacatacaattcatatactcaaacatgatacatgcatgtatgcaagta
tgcacacacatacacacacacgaattaaaaatggaacaaatactttaaaa
attcaaagaataagagtaaaaataaataaaagaataaagttaatttaaaa
ttataggaaatagctaaaagtgtccaaatcacatctgtatgaacactaaa
ttccagtgcagctgaggaatagcagagtcaagtaaaaacataatggatga
cactggataatatcagaaaataatcagaataataagcatgtgtctaagaa
aagaaaaaaaacagagagaaatattagtgaagtagaagacaaactcttaa
ctgacatctaatgaagtctgtagttagaaagattagtcaaagcagtatgt
aaacttacagcctaaaatgaaaagataccttcaatcggcatactggcagg
gccattcattatataggaatatgagtaataaacaaattcaaatcattgtt
ccatattcttgagataaacacacctgggttggtggcaaggcaatataagt
ctatttaatgccagataactaactatgaaactacaaaggattaaacagta
aaatttatgtcatagtttagtccaagaaatgaaggactttaaagattaag
aaatattcctcagagtgtcttggaaattattcaaatgctttcaatggcaa
gaatattagatctcaatataaatttcaaagagtgattgtggaacagggtt
tatgtggtttcattaaagcacaagggggataatgagtgctaaagaattca
tacccaagcattcaattatatcattttgcagaaaaagagccacagactta
ttattgtaaaagtctaggaagattcagagttgtgagcatgtctggaacaa
tgaagtcagggattaaacagatacccgagaagtcctatgcaacagcaact
gctatgagattgctgtactatctccactaggactaacctgatggccagat
gagtaaatattatgtactatggtgcatagaagagtaggagttattttatt
ccactttatatcctaatatcagctctctctacaatccctctcaacaggct
ttcttattcctctccctttcctctctggaagaggagacaccctatgtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_171739061_171739493
seq2: B6Ng01-206F07.b_596_1039 (reverse)

seq1  CCATTGCCTACACTAGCAAGATTTTGCTGAAAGGACCCTGATATAGCTGT  50
      ||||||| |||||  |||||| |||||||||| ||||| |||||||||||
seq2  CCATTGCATACACAGGCAAGA-TTTGCTGAAA-GACCCAGATATAGCTGT  48

seq1  CTCTTGTGAGGCTATGCCAGGGCCTAGCAAACACAGAAGTGGATGCTCAC  100
      || |||||||  | |||| |||||||||||||||||||||||||||||||
seq2  CT-TTGTGAGCTTTTGCC-GGGCCTAGCAAACACAGAAGTGGATGCTCAC  96

seq1  AGTCAGCTATTGGATGGATCACAGGGCTCCCAATGGAGGAGCTAGAGAAA  150
      ||||| |||||||||||| ||||||||||||  |||||||||||||||||
seq2  AGTCATCTATTGGATGGAACACAGGGCTCCCGGTGGAGGAGCTAGAGAAA  146

seq1  GTACCCAAGGAGCTAAAGGGATCTGCAACCCTATAGGTGGAAC-AACAAT  199
       |||||||||||||||||||||||||||||||||| ||||||| ||||||
seq2  ATACCCAAGGAGCTAAAGGGATCTGCAACCCTATATGTGGAACAAACAAT  196

seq1  ATGAACTAACCAGTAGCCCCTGGAGCTCGTGTCTCTAGCTGCATATGTAT  249
      |||||||||| ||||  ||| |||||| ||||||||||||||||||||| 
seq2  ATGAACTAACTAGTACACCCCGGAGCTGGTGTCTCTAGCTGCATATGTAG  246

seq1  CAGAAGATGGCCTAGTCGGCCATCAGTGAAAGGAGAGGCCCATTGGTCTT  299
      ||||||||||||||||| ||| ||| |  || || |||||||||||||||
seq2  CAGAAGATGGCCTAGTCAGCCGTCATTAGAAAGAAAGGCCCATTGGTCTT  296

seq1  GCAAACTTTATATGCCTCAGTACAGGGGAACGCCAGGGCCAAGAAGTTGG  349
      |||||||||||||||||||||||||| |||| ||||||||||||||| ||
seq2  GCAAACTTTATATGCCTCAGTACAGGAGAACTCCAGGGCCAAGAAGTAGG  346

seq1  AGT-------TGGGGGGGGGGTGGGAGGGAGGGCATGG-GGACTTTTGGG  391
      |||       || | | | || ||| ||| ||  | || |||||||||||
seq2  AGTGTGTGTGTGTGTGTGTGGGGGGGGGGGGGTTAAGGAGGACTTTTGGG  396

seq1  ATAGCATTGGAAATGTAAATGAAGAAAATACCTAA------TTAAAAA  433
      | |||||||||||||||||||||||||||||||||      |||||||
seq2  AAAGCATTGGAAATGTAAATGAAGAAAATACCTAATAAATTTTAAAAA  444

seq1: chr16_88969783_88970991
seq2: B6Ng01-206F07.g_69_1267

seq1  GAATTCCATCTCTATGGAATACAACCACTTCTTCAGGATTCCATGTTAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATCTCTATGGAATACAACCACTTCTTCAGGATTCCATGTTAAT  50

seq1  GGCACATACAATTCATATACTCAAACATGATACATGCATGTATGCAAGTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACATACAATTCATATACTCAAACATGATACATGCATGTATGCAAGTA  100

seq1  TGCACACACATACACACACACGAATTAAAAATGGAACAAATACTTTAAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACACACATACACACACACGAATTAAAAATGGAACAAATACTTTAAAA  150

seq1  ATTCAAAGAATAAGAGTAAAAATAAATAAAAGAATAAAGTTAATTTAAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAAAGAATAAGAGTAAAAATAAATAAAAGAATAAAGTTAATTTAAAA  200

seq1  TTATAGGAAATAGCTAAAAGTGTCCAAATCACATCTGTATGAACACTAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAGGAAATAGCTAAAAGTGTCCAAATCACATCTGTATGAACACTAAA  250

seq1  TTCCAGTGCAGCTGAGGAATAGCAGAGTCAAGTAAAAACATAATGGATGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAGTGCAGCTGAGGAATAGCAGAGTCAAGTAAAAACATAATGGATGA  300

seq1  CACTGGATAATATCAGAAAATAATCAGAATAATAAGCATGTGTCTAAGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGGATAATATCAGAAAATAATCAGAATAATAAGCATGTGTCTAAGAA  350

seq1  AAGAAAAAAAACAGAGAGAAATATTAGTGAAGTAGAAGACAAACTCTTAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAAAAAACAGAGAGAAATATTAGTGAAGTAGAAGACAAACTCTTAA  400

seq1  CTGACATCTAATGAAGTCTGTAGTTAGAAAGATTAGTCAAAGCAGTATGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACATCTAATGAAGTCTGTAGTTAGAAAGATTAGTCAAAGCAGTATGT  450

seq1  AAACTTACAGCCTAAAATGAAAAGATACCTTCAATCGGCATACTGGCAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTTACAGCCTAAAATGAAAAGATACCTTCAATCGGCATACTGGCAGG  500

seq1  GCCATTCATTATATAGGAATATGAGTAATAAACAAATTCAAATCATTGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATTCATTATATAGGAATATGAGTAATAAACAAATTCAAATCATTGTT  550

seq1  CCATATTCTTGAGATAAACACACCTGGGTTGGTGGCAAGGCAATATAAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATATTCTTGAGATAAACACACCTGGGTTGGTGGCAAGGCAATATAAGT  600

seq1  CTATTTAATGCCAGATAACTAACTATGAAACTACAAAGGATTAAACAGTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTTAATGCCAGATAACTAACTATGAAACTACAAAGGATTAAACAGTA  650

seq1  AAATTTATGTCATAGTTTAGTCCAAGAAATGAAGGACTTTAAAGATTAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTATGTCATAGTTTAGTCCAAGAAATGAAGGACTTTAAAGATTAAG  700

seq1  AAATATTCCTCAGAGTGTCTTGGAAATTATTCAAATGCTTTCAATGGCAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATTCCTCAGAGTGTCTTGGAAATTATTCAAATGCTTTCAATGGCAA  750

seq1  GAATATTAGATCTCAATATAAATTTCAAAGAGTGATTGTGGAACAGGGTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATATTAGATCTCAATATAAATTTCAAAGAGTGATTGTGGAACAGGGTT  800

seq1  TATGTGGTTTCATTAAAGCACAAGGGGGATAATGAGTGCTAAAGAATTCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTGGTTTCATTAAAGCACAAGGGGGATAATGAGTGCTAAAGAATTCA  850

seq1  TACCCAAGCATTCAATTATATCATTTTGCAGAAAAAGAGCCACAGACTTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCAAGCATTCAATTATATCATTTTGCAGAAAAAGAGCCACAGACTTA  900

seq1  TTATTGTAAAAGTCTAGGAAGATTCAGAGTTGTGAGCATGTCTGGAACAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTGTAAAAGTCTAGGAAGATTCAGAGTTGTGAGCATGTCTGGAACAA  950

seq1  TGAAGTCA-GGATTAAACAGATACCCGAGAAGTCCTATGCAACCAGCAAC  999
      |||||||| ||||||||||||||||||||||||||||||||| |||||||
seq2  TGAAGTCAGGGATTAAACAGATACCCGAGAAGTCCTATGCAA-CAGCAAC  999

seq1  TGCTATGAGAATTGCTGTACTATTCTCCACTA-GACTAACCTGATGGCAA  1048
      ||||||||| |||||||||||| ||||||||| ||||||||||||||| |
seq2  TGCTATGAG-ATTGCTGTACTA-TCTCCACTAGGACTAACCTGATGGCCA  1047

seq1  GAATGAGTAAAATATTATGTAACTATGTTGCATAGAAAGAGTAAGAGTTA  1098
      | |||||| ||||||||||| |||||| ||||||| ||||||| ||||||
seq2  G-ATGAGT-AAATATTATGT-ACTATGGTGCATAG-AAGAGTAGGAGTTA  1093

seq1  -TTTATT-CACTTTATATCCTAATATCAGCTCTCTCCTACCAGTTCCCCT  1146
       |||||| ||||||||||||||||||||||||||| |||| |    ||||
seq2  TTTTATTCCACTTTATATCCTAATATCAGCTCTCT-CTACAA---TCCCT  1139

seq1  CTCACACAGCTCTTTCCCTATTTCCTCTCCCCTTCTCCTCTGAGAAGAGG  1196
      |||| ||||  ||||  ||  |||||||||| |||  ||||| |||||||
seq2  CTCA-ACAG-GCTTT--CTTATTCCTCTCCCTTTCCTCTCTG-GAAGAGG  1184

seq1  AG--ACCCTATGTGT  1209
      ||  |||||||||||
seq2  AGACACCCTATGTGT  1199