BAC Information

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BAC

Clone NameB6Ng01-208K18
Chromosome16 (Build37)
Map Location 87,683,562 - 87,802,642
singlet/doubletdoublet
Overlap geneBach1, LOC100039901
Upstream geneN6amt1, Zfp294, ORF5, LOC100040088, Usp16, Cct8, B130034C11Rik, LOC435486, ORF63
Downstream geneGrik1, EG622373, Cldn17, Cldn8, Gm312, 2310079G19Rik, 2310002B14Rik, EG665513, 2310061N02Rik, Krtap13-1, Krtap13, 2310034C09Rik, 2310057N15Rik, EG546672
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-208K18.bB6Ng01-208K18.g
ACCGA027490GA027491
length1,182971
definitionB6Ng01-208K18.b B6Ng01-208K18.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(87,683,562 - 87,684,746)(87,801,675 - 87,802,642)
sequence
atcttggttttcctagatcattagctctaactacttcagctcaacccctt
ggttctgcctgggaattctgtctgtgcaatagagagcgcatgctcacaag
atgtatatatcccttgtggatttcctctttgggggaacattgtcccatgt
ccctagactccaagatgtaaaggactccatgataaatttgcactcctttt
ttaaagtgtttgcctggttgtggtagagcaggaagtcttattcctgccat
gccatcttgggcagaagtaaagatctagataattctacagcgcctccttg
acttttaaaattggctagagtgattcgcctcatcctttcctggctggcac
atttgtctcctaaatcttgcgtaattctagttatgaagaggcaggaaact
agccccacctgcgtgactttcttccctggggaatgaaaggagacatacct
ggcacttgtagaatcccctatcactgaattctatctgtgtgactgatccg
ctttcttccaaggagatgcatagtttcacatctccttttgctttttgaat
gcctcttgccgctactcccaacacttatctgattgaaacaaagaatttac
ctgaatgaatattccagatcaggggccaaggcacagacattcacattagt
cggagttggacctgagccttggcttaattactaggtaaacataatattcc
ttgagctattactacctgatgcattgtgggattttaacctaggtggtttc
atttgattctcctgatgacattattttgtgggaaattggtattattagga
gttcaatatagaaatctgctttgggagtcagatgcctaattttagccctg
atactgctcctttctaggtttatattactagggacattcttcagcttctt
taatccttgactttttttttgcccctctggacttgcaatggtactatgtt
cctctatggacacatgagtgctataagataaaagaattcaccaagtactc
agaatggctatggtacagagagctcataaaggtctaggccatgggctggg
atgtagcccaggttttagagttttgcactgtgttgtgtgtgaaggctctg
ggcctggaatcctaagtctgtattaattcctgggtgcacatcgtatccta
gcgcgtgatgaatggctgaagttaggggaacc
gaattcaaagggatgacataagtgatctacacagggaggctggggcgagg
gtccataaagtacttcaaacactctgccactttgctggtgtgccatcagt
aaagggaacatggcttctgggaagggaagatggcctctagggaggtagag
ccacaagcacagtgataggtagagttaagtgggacaaagactaataaaga
cgtcacagatgaggtgttgtgcctagtgtctagatgaggatatgggaggt
acaaagatggagttggtaaagaaacccccctgctacaaaaatagaactac
gaccttcaggttcaaatatgcactgaagccaaaaacactccttccaagag
gaagaggcagttagaaacatctgtcgtttgtgttccatcagttgctacag
gaaagtggttccctgcctcccacttcccaatatcccccaccactcatctt
taaataccgaagaagacaaaagcatcatgagtagtaatagaggagtagaa
gctgggtgggaaaatgcagatgtctcttgacttcctgtcgggtcctgttc
cattaactcagctgtacacataaaagacacacaaataccttatctactga
atactgtgggtcagcaacacatagcacgtagaatattgatctcttttgtc
ttccattactgtgaggctggctagctacactgcccagtatcgtaagagag
gattagagtgcatgaactagccttgcaaaagactcaaattcaaaacacag
ttcccactgaatgtggactgctttggtcctgtggcagtggaatagtggaa
tgggacatttctatactttaacaatcataaggagatatagtgatgaaagg
cagtttggtgctcaaccctgagagaatgaaccttgggcttagaacatgtc
accaagtgatgaagatgtagtcttgtgccaggcttcaagctaaggtgtgt
gtgtgtgtgtatgtgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_87683562_87684746
seq2: B6Ng01-208K18.b_55_1236

seq1  ATCTTGGTTTTCCTAGATCATTAGCTCTAACTACTTCAGCTCAACCCCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTGGTTTTCCTAGATCATTAGCTCTAACTACTTCAGCTCAACCCCTT  50

seq1  GGTTCTGCCTGGGAATTCTGTCTGTGCAATAGAGAGCGCATGCTCACAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCTGCCTGGGAATTCTGTCTGTGCAATAGAGAGCGCATGCTCACAAG  100

seq1  ATGTATATATCCCTTGTGGATTTCCTCTTTGGGGGAACATTGTCCCATGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATATATCCCTTGTGGATTTCCTCTTTGGGGGAACATTGTCCCATGT  150

seq1  CCCTAGACTCCAAGATGTAAAGGACTCCATGATAAATTTGCACTCCTTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTAGACTCCAAGATGTAAAGGACTCCATGATAAATTTGCACTCCTTTT  200

seq1  TTAAAGTGTTTGCCTGGTTGCGGTAGAGCAGGAAGTCTTATTCCTGCCAT  250
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  TTAAAGTGTTTGCCTGGTTGTGGTAGAGCAGGAAGTCTTATTCCTGCCAT  250

seq1  GCCATCTTGGGCAGAAGTAAAGATCTAGATAATTCTACAGCGCCTCCTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATCTTGGGCAGAAGTAAAGATCTAGATAATTCTACAGCGCCTCCTTG  300

seq1  ACTTTTAAAATTGGCTAGAGTGATTCGCCTCATCCTTTCCTGGCTGGCAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTAAAATTGGCTAGAGTGATTCGCCTCATCCTTTCCTGGCTGGCAC  350

seq1  ATTTGTCTCCTAAATCTTGCGTAATTCTAGTTATGAAGAGGCAGGAAACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGTCTCCTAAATCTTGCGTAATTCTAGTTATGAAGAGGCAGGAAACT  400

seq1  AGCCCCACCTGCGTGACTTTCTTCCCTGGGGAATGAAAGGAGACATACCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCCACCTGCGTGACTTTCTTCCCTGGGGAATGAAAGGAGACATACCT  450

seq1  GGCACTTGTAGAATCCCCTATCACTGAATTCTATCTGTGTGACTGATCCG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACTTGTAGAATCCCCTATCACTGAATTCTATCTGTGTGACTGATCCG  500

seq1  CTTTCTTCCAAGGAGATGCATAGTTTCACATCTCCTTTTGCTTTTTGAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTTCCAAGGAGATGCATAGTTTCACATCTCCTTTTGCTTTTTGAAT  550

seq1  GCCTCTTGCCGCTACTCCCAACACTTATCTGATTGAAACAAAGAATTTAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCTTGCCGCTACTCCCAACACTTATCTGATTGAAACAAAGAATTTAC  600

seq1  CTGAATGAATATTCCAGATCAGGGGCCAAGGCACAGACATTCACATTAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAATGAATATTCCAGATCAGGGGCCAAGGCACAGACATTCACATTAGT  650

seq1  CGGAGTTGGACCTGAGCCTTGGCTTAATTACTAGGTAAACATAATATTCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGAGTTGGACCTGAGCCTTGGCTTAATTACTAGGTAAACATAATATTCC  700

seq1  TTGAGCTATTACTACCTGATGCATTGTGGGATTTTAACCTAGGTGGTTTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGCTATTACTACCTGATGCATTGTGGGATTTTAACCTAGGTGGTTTC  750

seq1  ATTTGATTCTCCTGATGACATTATTTTGTGGGAAATTGGTATTATTAGGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGATTCTCCTGATGACATTATTTTGTGGGAAATTGGTATTATTAGGA  800

seq1  GTTCAATATAGAAATCTGCTTTGGGAGTCAGATGCCTAATTTTAGCCCTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAATATAGAAATCTGCTTTGGGAGTCAGATGCCTAATTTTAGCCCTG  850

seq1  ATACTGCTCCTTTCTAGGTTTATATTACTAGGGACATTCTTCAGCTTCTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTGCTCCTTTCTAGGTTTATATTACTAGGGACATTCTTCAGCTTCTT  900

seq1  TAATCCTTGAC-TTTTTTTTGCCCCTCTGGACTTGCAATGGTACTATGTT  949
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  TAATCCTTGACTTTTTTTTTGCCCCTCTGGACTTGCAATGGTACTATGTT  950

seq1  CCTCTATGGACACATGAGTGCTATAAGATAAAAGAATTCACCAAGTACTC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTATGGACACATGAGTGCTATAAGATAAAAGAATTCACCAAGTACTC  1000

seq1  AGAATGGCTATTGGTACAGAGAAGGCCTCAATAAAGTCTAGCCAATGGGC  1049
      |||||||||| |||||||||||    ||||  || |||||| | ||||||
seq2  AGAATGGCTA-TGGTACAGAGA---GCTCATAAAGGTCTAGGCCATGGGC  1046

seq1  TGGGATGGTAGCCCAGGTTTTTAGAGTTTTTGCACTG---TGTGTGTGAA  1096
      |||||| |||||||||| |||||||| ||||||||||   ||||||||||
seq2  TGGGAT-GTAGCCCAGG-TTTTAGAG-TTTTGCACTGTGTTGTGTGTGAA  1093

seq1  -GCTCTGGGCTTG--ATTCTCAGTCCTGTA-TAAATCCTGGTGGCACACA  1142
       ||||||||| ||  || || ||| ||||| ||| |||||  ||  ||||
seq2  GGCTCTGGGCCTGGAATCCTAAGT-CTGTATTAATTCCTG--GGTGCACA  1140

seq1  TCCGTTATCCTAGCGGCTGATGGATGGCTG-AGGTAGGGGAACC  1185
      ||   ||||||||||  ||||| ||||||| || ||||||||||
seq2  TC--GTATCCTAGCGCGTGATGAATGGCTGAAGTTAGGGGAACC  1182

seq1: chr16_87801675_87802642
seq2: B6Ng01-208K18.g_68_1038 (reverse)

seq1  CACACACACATACACACACACACACACCTTAGCTTGAAGCCTGGCAC-AG  49
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  CACACACACATACACACACACACACACCTTAGCTTGAAGCCTGGCACAAG  50

seq1  ACTACATCTTCATCACTTGGTGACATGTTCTAAGCCCAAGGTTCATTCTC  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACATCTTCATCACTTGGTGACATGTTCTAAGCCCAAGGTTCATTCTC  100

seq1  TCAGGGTTGAGCACCAAACTGCC-TTCATCACTATATCTCCTTATGATTG  148
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  TCAGGGTTGAGCACCAAACTGCCTTTCATCACTATATCTCCTTATGATTG  150

seq1  TT-AAGTATAGAAATGTCCCATTCCACTATTCCACTGCCACAGGACCAAA  197
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAGTATAGAAATGTCCCATTCCACTATTCCACTGCCACAGGACCAAA  200

seq1  GCAGTCCACATTCAGTGGGAACTGTGTTTTGAATTTGAGTCTTTTGCAAG  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTCCACATTCAGTGGGAACTGTGTTTTGAATTTGAGTCTTTTGCAAG  250

seq1  GCTAGTTCATGCACTCTAATCCTCTCTTACGATACTGGGCAGTGTAGCTA  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGTTCATGCACTCTAATCCTCTCTTACGATACTGGGCAGTGTAGCTA  300

seq1  GCCAGCCTCACAGTAATGGAAGACAAAAGAGATCAATATTCTACGTGCTA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGCCTCACAGTAATGGAAGACAAAAGAGATCAATATTCTACGTGCTA  350

seq1  TGTGTTGCTGACCCACAGTATTCAGTAGATAAGGTATTTGTGTGTCTTTT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTGCTGACCCACAGTATTCAGTAGATAAGGTATTTGTGTGTCTTTT  400

seq1  ATGTGTACAGCTGAGTTAATGGAACAGGACCCGACAGGAAGTCAAGAGAC  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTACAGCTGAGTTAATGGAACAGGACCCGACAGGAAGTCAAGAGAC  450

seq1  ATCTGCATTTTCCCACCCAGCTTCTACTCCTCTATTACTACTCATGATGC  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGCATTTTCCCACCCAGCTTCTACTCCTCTATTACTACTCATGATGC  500

seq1  TTTTGTCTTCTTCGGTATTTAAAGATGAGTGGTGGGGGATATTGGGAAGT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTCTTCTTCGGTATTTAAAGATGAGTGGTGGGGGATATTGGGAAGT  550

seq1  GGGAGGCAGGGAACCACTTTCCTGTAGCAACTGATGGAACACAAACGACA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGGCAGGGAACCACTTTCCTGTAGCAACTGATGGAACACAAACGACA  600

seq1  GATGTTTCTAACTGCCTCTTCCTCTTGGAAGGAGTGTTTTTGGCTTCAGT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTTTCTAACTGCCTCTTCCTCTTGGAAGGAGTGTTTTTGGCTTCAGT  650

seq1  GCATATTTGAACCTGAAGGTCGTAGTTCTATTTTTGTAGCAGGGGGGTTT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATATTTGAACCTGAAGGTCGTAGTTCTATTTTTGTAGCAGGGGGGTTT  700

seq1  CTTTACCAACTCCATCTTTGTACCTCCCATATCCTCATCTAGACACTAGG  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTACCAACTCCATCTTTGTACCTCCCATATCCTCATCTAGACACTAGG  750

seq1  CACAACACCTCATCTGTGACGTCTTTATTAGTCTTTGTCCCACTTAACTC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAACACCTCATCTGTGACGTCTTTATTAGTCTTTGTCCCACTTAACTC  800

seq1  TACCTATCACTGTGCTTGTGGCTCTACCTCCCTAGAGGCCATCTTCCCTT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTATCACTGTGCTTGTGGCTCTACCTCCCTAGAGGCCATCTTCCCTT  850

seq1  CCCAGAAGCCATGTTCCCTTTACTGATGGCACACCAGCAAAGTGGCAGAG  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGAAGCCATGTTCCCTTTACTGATGGCACACCAGCAAAGTGGCAGAG  900

seq1  TGTTTGAAGTACTTTATGGACCCTCGCCCCAGCCTCCCTGTGTAGATCAC  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGAAGTACTTTATGGACCCTCGCCCCAGCCTCCCTGTGTAGATCAC  950

seq1  TTATGTCATCCCTTTGAATTC  968
      |||||||||||||||||||||
seq2  TTATGTCATCCCTTTGAATTC  971