BAC Information

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BAC

Clone NameB6Ng01-208M23
Chromosome16 (Build37)
Map Location 66,632,872 - 66,724,675
singlet/doubletdoublet
Overlap geneCadm2
Upstream geneEG383186, Vgll3, LOC664846, LOC100039035
Downstream gene9330155M09Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-208M23.bB6Ng01-208M23.g
ACCGA027589GA027590
length1,1661,132
definitionB6Ng01-208M23.b B6Ng01-208M23.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(66,632,872 - 66,634,041)(66,723,517 - 66,724,675)
sequence
gaattcacactgaagcaaactttatatcttataacgttttaagcacttca
agtgaaattacacaaaatgtctggcagacaaagttggtggcatttttcct
cccaacaaaattaatcattgcctccaggactaagtcagacttgtctgaat
tcaatttgaccacgcagattttacaactcacttgaactattttgcttttg
gcaaagaatctctgtgtctgccactgctgtaaacctgcgcttggcatcgt
ttgaactatgaatatggacacaataacaagaggatctgcctaagaagcta
atggctttttcatcggtctttctctcaccagtaataggctagcagatttt
gtgtaatttttacctggggatagtaatgttagaaatatgttttttgaagt
taaaaataaaagatcatcattttctctacaggaatagatgaaaggacaaa
ttacaagataccaggactgctgagaatagcctagagccaccaggcatttg
ttgaaagaaagaaaaggtgtggacaaatatgttctaacataaaacacatc
attagtttacatatccttcttaagtttcatacctgctcaggaaaatattt
ttttgaattagcaatattttaaaatttttatttttttattcatttattta
tccatttttataaacattatacttttgaacccacagtcttgtgcattcca
aacaccatgttattactgaactaacaatttttctttaattcagttatata
aagggatctggccctgcggaggtagggtgaggatataacagggaagggtt
gaaaattgattatttgtctgtttgtagaaagctttgttatatgaaaatgt
atcacaatgttatggaagccgagctgtgtcaaagtcagtttgcaggcacc
cactgggtagagagtagagatgagaaggaacaaggctggcagaatctaaa
cctaaggaaaaccattgtgcagccaagtatgaggataaggctcctaaatt
aagcagtctgaacagatttccttcttaagatttgtgtttggatagctttt
gggagaatgtataaagacatttacattgctagcatatcaatttaagtatg
ataccattcgaaactgacagatatcataaccaaatctgcttagtgtacac
tctaagtcttagactt

gaattcattgagtagggagagcattggtaaattatcttcaaatctccctg
tatgagtgcaaagtctctaagcctctgctacctgtgtttgtttgattttt
gtttgtttgtttgtttacttattcctttacttgtgtggagtaaaatggtt
gccagatcttcactacaaggagagaaaggatctgcaaattaattaccagt
aaattaatacaaaattatgcaaatatgtcttattagttttctttccatta
agagaatttcaacatcacatagacaaataattttcagctctgaaataata
gcttttctgaaaatgcaatcactgtcttgaaagatcttagcaactgcaat
cctagcccttagcacacaatctgatttttctttgatgaagttaaaggtat
gcacatgttattaattcagtcatgttgcccattaaaaaaagtcatgtaaa
taaaaattcttctgtttgttttccctttggagtttatctgtttgctagaa
attgtgactgtggcattttacctgtttaaaggacaaatagttttaattac
ccttaatagaattttaagttgtttttttttttttaactgagaatgaaatc
caattctctgatatgcttgatgttctgatactagagagcaagtcattttc
taaaattgttaataggtttacctggacatgacttcttgatattcttttgg
ggaactgtattggatagttttagatctccatgagctagaatcatctaaga
agagggaaccccatacacgaaaacgccttcataagatcacgctataggca
agtctgttctgcattttcttaattagttattgataggaagagagccccat
cccattgtgagtggtattgtcactggattctataagacagcaagggtcag
caagccacaaggagcaagccagtgagctgcatggctccatggtctgtgca
ttagctcctactctggtcttcccggactgaatcctgttctgacttcagtc
actataatagttatgtggagtaatacccagctgctttggtcatgtgttta
tcaaagcgtaatacacagtaagcaggaacttaaaacgaagctggcatacc
ggaggagtccttagccttgtgaagctgatgac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_66632872_66634041
seq2: B6Ng01-208M23.b_49_1214

seq1  GAATTCACACTGAAGCAAACTTTATATCTTATAACGTTTTAAGCACTTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACACTGAAGCAAACTTTATATCTTATAACGTTTTAAGCACTTCA  50

seq1  AGTGAAATTACACAAAATGTCTGGCAGACAAAGTTGGTGGCATTTTTCCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAAATTACACAAAATGTCTGGCAGACAAAGTTGGTGGCATTTTTCCT  100

seq1  CCCAACAAAATTAATCATTGCCTCCAGGACTAAGTCAGACTTGTCTGAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAACAAAATTAATCATTGCCTCCAGGACTAAGTCAGACTTGTCTGAAT  150

seq1  TCAATTTGACCACGCAGATTTTACAACTCACTTGAACTATTTTGCTTTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATTTGACCACGCAGATTTTACAACTCACTTGAACTATTTTGCTTTTG  200

seq1  GCAAAGAATCTCTGTGTCTGCCACTGCTGTAAACCTGCGCTTGGCATCGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAGAATCTCTGTGTCTGCCACTGCTGTAAACCTGCGCTTGGCATCGT  250

seq1  TTGAACTATGAATATGGACACAATAACAAGAGGATCTGCCTAAGAAGCTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAACTATGAATATGGACACAATAACAAGAGGATCTGCCTAAGAAGCTA  300

seq1  ATGGCTTTTTCATCGGTCTTTCTCTCACCAGTAATAGGCTAGCAGATTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCTTTTTCATCGGTCTTTCTCTCACCAGTAATAGGCTAGCAGATTTT  350

seq1  GTGTAATTTTTACCTGGGGATAGTAATGTTAGAAATATGTTTTTTGAAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTAATTTTTACCTGGGGATAGTAATGTTAGAAATATGTTTTTTGAAGT  400

seq1  TAAAAATAAAAGATCATCATTTTCTCTACAGGAATAGATGAAAGGACAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAATAAAAGATCATCATTTTCTCTACAGGAATAGATGAAAGGACAAA  450

seq1  TTACAAGATACCAGGACTGCTGAGAATAGCCTAGAGCCACCAGGCATTTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAAGATACCAGGACTGCTGAGAATAGCCTAGAGCCACCAGGCATTTG  500

seq1  TTGAAAGAAAGAAAAGGTGTGGACAAATATGTTCTAACATAAAACACATC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAAGAAAGAAAAGGTGTGGACAAATATGTTCTAACATAAAACACATC  550

seq1  ATTAGTTTACATATCCTTCTTAAGTTTCATACCTGCTCAGGAAAATATTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGTTTACATATCCTTCTTAAGTTTCATACCTGCTCAGGAAAATATTT  600

seq1  TTTTGAATTAGCAATATTTTAAAATTTTTATTTTTTTATTCATTTATTTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGAATTAGCAATATTTTAAAATTTTTATTTTTTTATTCATTTATTTA  650

seq1  TCCATTTTTATAAACATTATACTTTTGAACCCACAGTCTTGTGCATTCCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATTTTTATAAACATTATACTTTTGAACCCACAGTCTTGTGCATTCCA  700

seq1  AACACCATGTTATTACTGAACTAACAATTTTTCTTTAATTCAGTTATATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACCATGTTATTACTGAACTAACAATTTTTCTTTAATTCAGTTATATA  750

seq1  AAGGGATCTGGCCCTGCGGAGGTAGGGTGAGGATATAACAGGGAAGGGTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGATCTGGCCCTGCGGAGGTAGGGTGAGGATATAACAGGGAAGGGTT  800

seq1  GAAAATTGATTATTTGTCTGTTTGTAGAAAGCTTTGTTATATGAAAATGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATTGATTATTTGTCTGTTTGTAGAAAGCTTTGTTATATGAAAATGT  850

seq1  ATCACAATGTTATGGAAGCCGAGCTGTGTCAAAGTCAGTTTGCAGGCACC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACAATGTTATGGAAGCCGAGCTGTGTCAAAGTCAGTTTGCAGGCACC  900

seq1  CACTGGGTAGAGAGTAAGAGATGAGAAGGAACAAGGCTGGCAGAATCTAA  950
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  CACTGGGTAGAGAGT-AGAGATGAGAAGGAACAAGGCTGGCAGAATCTAA  949

seq1  ACCTAAGGAAAACCATTGTGCAGCCAAGTATGAGGATTAGGCTCCTAAAT  1000
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  ACCTAAGGAAAACCATTGTGCAGCCAAGTATGAGGATAAGGCTCCTAAAT  999

seq1  TAAGCAGTCTGAACAGATTTCCTTCTT-AGATTTGTGTTTGGATTAGGCT  1049
      ||||||||||||||||||||||||||| ||||||||||||||||   |||
seq2  TAAGCAGTCTGAACAGATTTCCTTCTTAAGATTTGTGTTTGGAT--AGCT  1047

seq1  TTTGGGAGATTGTATAAAGACCATATACATTGCTTAGCATACCAATTTAA  1099
      ||||||||| |||||||||| ||| |||||||| ||||||| ||||||||
seq2  TTTGGGAGAATGTATAAAGA-CATTTACATTGC-TAGCATATCAATTTAA  1095

seq1  GTATTGGTTACATTCAGAAACTGACAGATA-CAT-ACACAATCTGGCCTA  1147
      ||| || |  ||||| |||||||||||||| ||| ||  ||||| || ||
seq2  GTA-TGATACCATTC-GAAACTGACAGATATCATAACCAAATCT-GCTTA  1142

seq1  GTGAACACTCT-AGTCATAGACTT  1170
      ||| ||||||| |||| |||||||
seq2  GTGTACACTCTAAGTCTTAGACTT  1166


seq1: chr16_66723517_66724675
seq2: B6Ng01-208M23.g_66_1197 (reverse)

seq1  GTCATCAAACCTCCACAGGGCTAAGGGCCTCCCCTCCCGGTGATGCCAGG  50
      ||||||  | || |||| |||||| || ||||    ||||| |||||| |
seq2  GTCATC--AGCTTCACAAGGCTAA-GGACTCC---TCCGGT-ATGCCA-G  42

seq1  CTTCGTTTTTTAGTTCCTGCCTTACTTGTGGTTAATAACGCCTGTGATAA  100
      ||||| |||| |||||||| ||||||    ||  || ||| || |||| |
seq2  CTTCG-TTTTAAGTTCCTG-CTTACT----GTGTATTACG-CTTTGAT-A  84

seq1  AACACCATGACCAAAAGCAGCTTGGGGTTATACCTCCACATAACTATTTA  150
      |||| ||||||| |||||||||   || |||  ||||||||||||| |||
seq2  AACA-CATGACC-AAAGCAGCT---GGGTATTACTCCACATAACTA-TTA  128

seq1  TAGTGACTGAAAGTCAGAACAGGAATTCAGTCCGGGAAGGAACCAGGAGG  200
      ||||||||| ||||||||||||| |||||||||||||||  |||||   |
seq2  TAGTGACTG-AAGTCAGAACAGG-ATTCAGTCCGGGAAG--ACCAG--AG  172

seq1  TAGGAGCTAATGCACAGACCATGGAGCCATGCAGCTCACTGGCTTGCTCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAGCTAATGCACAGACCATGGAGCCATGCAGCTCACTGGCTTGCTCC  222

seq1  TTGTGGCTTGCTGA-CCTTGCTGTCTTATAGAATCCAGTGACAATACCAC  299
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  TTGTGGCTTGCTGACCCTTGCTGTCTTATAGAATCCAGTGACAATACCAC  272

seq1  TCACAATGGGATGGGGCTCTCTTCCTATCAATAACTAATTAAGAAAATGC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAATGGGATGGGGCTCTCTTCCTATCAATAACTAATTAAGAAAATGC  322

seq1  AGAACAGACTTGCCTATAGCGTGATCTTATGAAGGCGTTTTCGTGTATGG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACAGACTTGCCTATAGCGTGATCTTATGAAGGCGTTTTCGTGTATGG  372

seq1  GGTTCCCTCTTCTTAGATGATTCTAGCTCATGGAGATCTAAAACTATCCA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCCCTCTTCTTAGATGATTCTAGCTCATGGAGATCTAAAACTATCCA  422

seq1  ATACAGTTCCCCAAAAGAATATCAAGAAGTCATGTCCAGGTAAACCTATT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAGTTCCCCAAAAGAATATCAAGAAGTCATGTCCAGGTAAACCTATT  472

seq1  AACAATTTTAGAAAATGACTTGCTCTCTAGTATCAGAACATCAAGCATAT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAATTTTAGAAAATGACTTGCTCTCTAGTATCAGAACATCAAGCATAT  522

seq1  CAGAGAATTGGATTTCATTCTCAGTTAAAAAAAAAAAAACAACTTAAAAT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGAATTGGATTTCATTCTCAGTTAAAAAAAAAAAAACAACTTAAAAT  572

seq1  TCTATTAAGGGTAATTAAAACTATTTGTCCTTTAAACAGGTAAAATGCCA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATTAAGGGTAATTAAAACTATTTGTCCTTTAAACAGGTAAAATGCCA  622

seq1  CAGTCACAATTTCTAGCAAACAGATAAACTCCAAAGGGAAAACAAACAGA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCACAATTTCTAGCAAACAGATAAACTCCAAAGGGAAAACAAACAGA  672

seq1  AGAATTTTTATTTACATGACTTTTTTTAATGGGCAACATGACTGAATTAA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATTTTTATTTACATGACTTTTTTTAATGGGCAACATGACTGAATTAA  722

seq1  TAACATGTGCATACCTTTAACTTCATCAAAGAAAAATCAGATTGTGTGCT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACATGTGCATACCTTTAACTTCATCAAAGAAAAATCAGATTGTGTGCT  772

seq1  AAGGGCTAGGATTGCAGTTGCTAAGATCTTTCAAGACAGTGATTGCATTT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGCTAGGATTGCAGTTGCTAAGATCTTTCAAGACAGTGATTGCATTT  822

seq1  TCAGAAAAGCTATTATTTCAGAGCTGAAAATTATTTGTCTATGTGATGTT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAAAAGCTATTATTTCAGAGCTGAAAATTATTTGTCTATGTGATGTT  872

seq1  GAAATTCTCTTAATGGAAAGAAAACTAATAAGACATATTTGCATAATTTT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATTCTCTTAATGGAAAGAAAACTAATAAGACATATTTGCATAATTTT  922

seq1  GTATTAATTTACTGGTAATTAATTTGCAGATCCTTTCTCTCCTTGTAGTG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTAATTTACTGGTAATTAATTTGCAGATCCTTTCTCTCCTTGTAGTG  972

seq1  AAGATCTGGCAACCATTTTACTCCACACAAGTAAAGGAATAAGTAAACAA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATCTGGCAACCATTTTACTCCACACAAGTAAAGGAATAAGTAAACAA  1022

seq1  ACAAACAAACAAAAATCAAACAAACACAGGTAGCAGAGGCTTAGAGACTT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAACAAACAAAAATCAAACAAACACAGGTAGCAGAGGCTTAGAGACTT  1072

seq1  TGCACTCATACAGGGAGATTTGAAGATAATTTACCAATGCTCTCCCTACT  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACTCATACAGGGAGATTTGAAGATAATTTACCAATGCTCTCCCTACT  1122

seq1  CAATGAATTC  1159
      ||||||||||
seq2  CAATGAATTC  1132


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