BAC Information

Click to search

BAC

Clone NameB6Ng01-209F19
Chromosome16 (Build37)
Map Location 90,886,448 - 91,041,134
singlet/doubletdoublet
Overlap gene4931408A02Rik, LOC665863, 1110004E09Rik, 4930534H18Rik, Synj1, 1810007M14Rik
Upstream geneTiam1, LOC100040496, LOC640694, LOC100040440, Sod1, Sfrs15, LOC545175, Hunk, 2610039C10Rik, Mrap, 4921511H13Rik
Downstream gene4932438H23Rik, H3f3a-ps2, Olig2, Olig1, Ifnar2, Il10rb, Ifnar1, LOC665939, LOC665947, Ifngr2, Tmem50b, ORF28, Gart, Son, Donson, Cryzl1, LOC100040653, Itsn1, Atp5o
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-209F19.bB6Ng01-209F19.g
ACCGA027998GA027999
length1,026322
definitionB6Ng01-209F19.b B6Ng01-209F19.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(91,040,021 - 91,041,134)(90,886,448 - 90,886,769)
sequence
gaattcagtgttctccccagaggtagaaacatctgttggtaggtaccata
ggttgtccttcctgttcttgaaacagcagtcctggaagtactgttggaac
acatcgtctagatctctgtacttgtaagtccttaggtaggcaaagatgaa
ttaacttaaaagcatcattgatgaaaccctggctttgtggtattcctaaa
ctaaactgaagggctcagtggagccttgtcgaggcaggcccttatatata
ccaggctggcctccacccacacaggctagggtagccttgagagtaatcac
ctccttacagctgtgggcctcctgtgctcccggggatcaatactcaaaca
tgtatccatttgaggtgcagaactgaaaaaaacatatatacatacacaca
catataataacttttaactgagaatgtactggggttgtttacttctatat
acccattaagatgcctattttttttttttacaaaaaaaaggaaaacccct
cagcaaattgcaaatgttgacaacataaagaaactagaatatttctgcac
tactggtgaggaaggtgaacaacaaatactgtatgatttgataatagttg
atatttagaacagtcaaaatgagtaactaggacagttgctaagaggacct
gggtagggctggcacttccgaaggtcccgagttcaaatcccagcaaccac
atggtggctcacaaccatccgtaacgaaatctgatgccctcttctggagt
gtctgataacagctacagtgtacttacatataataaataaataaatctta
aaaaaaaaaaaaaagaggacctggggtagaggtagagtttgagttatgtg
acttagaccagaagactcaggactgacaacttgtgaccgacatagctttg
aaagaaacactaaggtcttgaagaaggggatttgttgtggctcatcctcc
cagcactcccctgcagcttagcacaccagttgaagtcagtctggcatagg
acacgtgtgttgcacctgctactgcc
aagtggtggaatatcttgttatcacatgtattggggaggagggagcctgg
cagcaacagaagcaaaacccatgtgggcgggaaataaccacctttaaaga
aacgacaaaatcctgggaatggttcggagctcagcatcaagcagggcaca
gccagccagccctgagtcagacctgaattaccttggccacttcctgaggt
cacggctaggataaagtctctggagatgagataaagtctttgggggaaag
ataagttctgtggcctaagcactgttgagagtctattattattggtcctc
acagcttatatctggggggttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_91040021_91041134
seq2: B6Ng01-209F19.b_47_1072 (reverse)

seq1  GGCAGTAGCAGTTTGTGCATTTGTTGACAATCAGTTGCTTAGGTGTGATG  50
                                                        
seq2  --------------------------------------------------  0

seq1  TCCCCAGATCTAGTCAATGACAGGCAGGCTGTCAGACTTTCCTTCCCAAG  100
                                                        
seq2  --------------------------------------------------  0

seq1  CTTCACTAGGGCACT-GCGTGTGC-ACACAC--GTCCTAT-CCAG-CTG-  143
               |||| | ||  |||| ||||||  ||||||| |||| ||| 
seq2  ---------GGCAGTAGCAGGTGCAACACACGTGTCCTATGCCAGACTGA  41

seq1  -CTCACCT-GTGTGCT-AGCTGCA-GGGAGTGCTGGGAAGATGAG-CAC-  187
        ||| || ||||||| ||||||| ||||||||||||| |||||| ||| 
seq2  CTTCAACTGGTGTGCTAAGCTGCAGGGGAGTGCTGGGAGGATGAGCCACA  91

seq1  ACAAATCCC--TCTTCAAGACCTTGGT-TTTCTTTTCAAGCTATGTCTGT  234
      |||||||||  ||||||||||||| || |||||||  |||||||||| ||
seq2  ACAAATCCCCTTCTTCAAGACCTTAGTGTTTCTTTCAAAGCTATGTCGGT  141

seq1  CACAAG-TGTCAGTCCTGAGTCTTCTGGTCT-AGTCACAT-ACTC-AACT  280
      |||||| |||||||||||||||||||||||| |||||||| |||| ||||
seq2  CACAAGTTGTCAGTCCTGAGTCTTCTGGTCTAAGTCACATAACTCAAACT  191

seq1  CTACCTCTA-CCCAGGTCCTCTTTTTTTTTTTTTTTAAGATTTATTTATT  329
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  CTACCTCTACCCCAGGTCCTCTTTTTTTTTTTTTTTAAGATTTATTTATT  241

seq1  TATTATATGTAAGTACACTGTAGCTGTTATCAGACACTCCAGAAGAGGGC  379
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTATATGTAAGTACACTGTAGCTGTTATCAGACACTCCAGAAGAGGGC  291

seq1  ATCAGATTTCGTTACGGATGGTTGTGAGCCACCATGTGGTTGCTGGGATT  429
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGATTTCGTTACGGATGGTTGTGAGCCACCATGTGGTTGCTGGGATT  341

seq1  TGAACTCGGGACCTTCGGAAGTGCCAGCCCTACCCAGGTCCTCTTAGCAA  479
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACTCGGGACCTTCGGAAGTGCCAGCCCTACCCAGGTCCTCTTAGCAA  391

seq1  CTGTCCTAGTTACTCATTTTGACTGTTCTAAATATCAACTATTATCAAAT  529
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCCTAGTTACTCATTTTGACTGTTCTAAATATCAACTATTATCAAAT  441

seq1  CATACAGTATTTGTTGTTCACCTTCCTCACCAGTAGTGCAGAAATATTCT  579
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACAGTATTTGTTGTTCACCTTCCTCACCAGTAGTGCAGAAATATTCT  491

seq1  AGTTTCTTTATGTTGTCAACATTTGCAATTTGCTGAGGGGTTTTCCTTTT  629
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTCTTTATGTTGTCAACATTTGCAATTTGCTGAGGGGTTTTCCTTTT  541

seq1  TTTTGTAAAAAAAAAAAATAGGCATCTTAATGGGTATATAGAAGTAAACA  679
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTAAAAAAAAAAAATAGGCATCTTAATGGGTATATAGAAGTAAACA  591

seq1  ACCCCAGTACATTCTCAGTTAAAAGTTATTATATGTGTGTGTATGTATAT  729
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCAGTACATTCTCAGTTAAAAGTTATTATATGTGTGTGTATGTATAT  641

seq1  ATGTTTTTTTCAGTTCTGCACCTCAAATGGATACATGTTTGAGTATTGAT  779
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTTTTTTCAGTTCTGCACCTCAAATGGATACATGTTTGAGTATTGAT  691

seq1  CCCCGGGAGCACAGGAGGCCCACAGCTGTAAGGAGGTGATTACTCTCAAG  829
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCGGGAGCACAGGAGGCCCACAGCTGTAAGGAGGTGATTACTCTCAAG  741

seq1  GCTACCCTAGCCTGTGTGGGTGGAGGCCAGCCTGGTATATATAAGGGCCT  879
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACCCTAGCCTGTGTGGGTGGAGGCCAGCCTGGTATATATAAGGGCCT  791

seq1  GCCTCGACAAGGCTCCACTGAGCCCTTCAGTTTAGTTTAGGAATACCACA  929
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCGACAAGGCTCCACTGAGCCCTTCAGTTTAGTTTAGGAATACCACA  841

seq1  AAGCCAGGGTTTCATCAATGATGCTTTTAAGTTAATTCATCTTTGCCTAC  979
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCAGGGTTTCATCAATGATGCTTTTAAGTTAATTCATCTTTGCCTAC  891

seq1  CTAAGGACTTACAAGTACAGAGATCTAGACGATGTGTTCCAACAGTACTT  1029
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGGACTTACAAGTACAGAGATCTAGACGATGTGTTCCAACAGTACTT  941

seq1  CCAGGACTGCTGTTTCAAGAACAGGAAGGACAACCTATGGTACCTACCAA  1079
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGACTGCTGTTTCAAGAACAGGAAGGACAACCTATGGTACCTACCAA  991

seq1  CAGATGTTTCTACCTCTGGGGAGAACACTGAATTC  1114
      |||||||||||||||||||||||||||||||||||
seq2  CAGATGTTTCTACCTCTGGGGAGAACACTGAATTC  1026

seq1: chr16_90886448_90886769
seq2: B6Ng01-209F19.g_73_394

seq1  AAGTGGTGGAATATCTTGTTATCACATGTATTGGGGAGGAGGGAGCCTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGGTGGAATATCTTGTTATCACATGTATTGGGGAGGAGGGAGCCTGG  50

seq1  CAGCAACAGAAGCAAAACCCATGTGGGCGGGAAATAACCACCTTTAAAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAACAGAAGCAAAACCCATGTGGGCGGGAAATAACCACCTTTAAAGA  100

seq1  AACGACAAAATCCTGGGAATGGTTCGGAGCTCAGCATCAAGCAGGGCACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGACAAAATCCTGGGAATGGTTCGGAGCTCAGCATCAAGCAGGGCACA  150

seq1  GCCAGCCAGCCCTGAGTCAGACCTGAATTACCTTGGCCACTTCCTGAGGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGCCAGCCCTGAGTCAGACCTGAATTACCTTGGCCACTTCCTGAGGT  200

seq1  CACGGCTAGGATAAAGTCTCTGGAGATGAGATAAAGTCTTTGGGGGAAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGGCTAGGATAAAGTCTCTGGAGATGAGATAAAGTCTTTGGGGGAAAG  250

seq1  ATAAGTTCTGTGGCCTAAGCACTGTTGAGAGTCTATCAGCAGTGGTCCTC  300
      |||||||||||||||||||||||||||||||||||| |  | ||||||||
seq2  ATAAGTTCTGTGGCCTAAGCACTGTTGAGAGTCTATTATTATTGGTCCTC  300

seq1  ACAGCTTAGATCTGGGGGGTTG  322
      |||||||| |||||||||||||
seq2  ACAGCTTATATCTGGGGGGTTG  322