BAC Information

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BAC

Clone NameB6Ng01-211G19
Chromosome16 (Build37)
Map Location 72,799,599 - 72,924,837
singlet/doubletdoublet
Overlap geneRobo1
Upstream genenone
Downstream geneLOC100039310, LOC100039318, LOC100039326, Robo2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-211G19.bB6Ng01-211G19.g
ACCGA029495GA029496
length1,097852
definitionB6Ng01-211G19.b B6Ng01-211G19.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(72,923,723 - 72,924,837)(72,799,599 - 72,800,449)
sequence
gaattccgtctaggactgtggcagctgcagttccccggctacttccgtct
tttgctgaacttcgcctcttcctcctccgagcaatttataaattggtgaa
gtgcacctatgataatttgatgacagactacatctagcccagctaattgc
aggcaagtgggaggcaccctgcagagacacagttaagttagagggagagg
atacttttcattgtgaaggataaattaagacctttccttataatgggagc
acaccaccagaggacctattcatgaagtgttattttaacaaagagaaaaa
aagcaaagattaagaaacatggacttcttaatgtctacctagttttcttg
cataagtgggggcttaaagacaagaatagaagacttgaatttggcatttt
ctgctgcaaatccattgggggggggcactacagcatggtccctaaaacaa
tcaagggagaaaactcccgtctaatttataatattccaaactccagctgg
ccactgcagccagctgatgaaatggcaggcagatgacccagcataagctt
ttagctgattcccgaggtgtctgattcccaagccatttagactagaaccc
caaagtgaatcgcgtaaaaaaaccaagcaatataaagagcggttttgtca
taaagtagcctttgcaagccatctcctaaaagcaagggagctgatttggc
ttttacgtctatgaaaattctgggcagattacatggtagtattcagcttg
gatatgaaaaattaatttagcccacagctactaaacttaatgtattattt
ccttcacaggtctcatgaaacaatgtcctgctgttttaaaggtaaaagcc
aagtcttatgggcaattttcactctcccacaaacctggttggctttttat
cgcctccccaagccatctggctataattctgaatttacatatagcccgct
acgaccgtctgaaataaaaatctacgagatatgactgcactctagaataa
ggatgacaatgtcatagtatttgagaagagaaagcctcgctttcaactct
gcttctttttggttacagacagagctgaaatactttgcacagcaaag

gaattcaccctgaagtccacgttgcttattgctcttcatctaacaacagt
caaagggttaaacttcatagcctctatttgtgtgtttattttatttccat
ttgttcagtacccattaaaagtataatattacattggtaactctcattaa
aatgttgagtaacttctcttattggatgaccataaaaccatttaaatgga
atttctacttaaacaagtggaaaatatttctgcttccgtccttgcctctt
tttactgggtgtttgttgtccatggtccttgcagagtcataaataaaacc
tgccattttttttttaaattcctggtgaggatgcattttcaatagcatat
aaagggagagtatagaaaagggtggccccagttaggaaattagctcatta
tggtcaaatgcagtgaaccaaacgacttatcccgttgaagatgctgagct
cctaaaaatagtcagacttttcgaaattagacaataaaagaaaaatgcga
ttccttgtttttatttgtcactttagtggcatttttattatttccttcaa
atgttttagcaccagatataaatgcctccatccacaaggctagtcctttc
cattggatagagggaggactcttgaatgtaaaaggaggagtctgtgagat
ggatggggttgggagcaaaggtggtgctcccattacaccctctcacaacc
tgaggatgctgacctcagcccataggtgcttctgcagcctctgtctttca
tgtgttgcttcagaatcctctcatcgatatttttccccattattagagaa
tcaaatcaactcttctctgtttggattattttgccccagcctgaaacaat
ga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_72923723_72924837
seq2: B6Ng01-211G19.b_46_1142 (reverse)

seq1  CTTTGCTGTTGGCAAAGTATTTTCAGCTCTTGTCCTTGTAACTCAAAAGA  50
      |||||||||  |||||||| ||||||||| ||||  ||||||  ||||||
seq2  CTTTGCTGT--GCAAAGTA-TTTCAGCTC-TGTC--TGTAACCAAAAAGA  44

seq1  GCCAAGAGTTTGAAAGCGAGCTTTTCTCTTCTCAAATACTATGAACATTT  100
        | |||| |||||||||||  ||||||||||||||||||||| ||| ||
seq2  AGC-AGAG-TTGAAAGCGAGGCTTTCTCTTCTCAAATACTATG-ACA-TT  90

seq1  GTCATCTTTATTTCTAGAGTGCAGTCATAATTCCTCCGTAGATTTTTATT  150
      |||||| ||| ||||||||||||||||||  |    ||||||||||||||
seq2  GTCATCCTTA-TTCTAGAGTGCAGTCATATCT----CGTAGATTTTTATT  135

seq1  TCAGACGGTCGTAGCGGTGGCTATATGTAAATTCAGAATTATAGCCAGAT  200
      ||||||||||||||||  ||||||||||||||||||||||||||||||||
seq2  TCAGACGGTCGTAGCG--GGCTATATGTAAATTCAGAATTATAGCCAGAT  183

seq1  GGCTTGGGGAGGCGATAAAAAGCCAACCAGGTTTTGTGGGAGAGTGAAAA  250
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  GGCTTGGGGAGGCGATAAAAAGCCAACCAGG-TTTGTGGGAGAGTGAAAA  232

seq1  TTGCCCATAAGACTTGGCTTTTACCTTTAAAACAGCAGGACATTGTTTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCCATAAGACTTGGCTTTTACCTTTAAAACAGCAGGACATTGTTTCA  282

seq1  TGAGACCTGTGAAGGAAATAATACATTAAGTTTAGTAGCTGTGGGCTAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGACCTGTGAAGGAAATAATACATTAAGTTTAGTAGCTGTGGGCTAAA  332

seq1  TTAATTTTTCATATCCAAGCTGAATACTACCATGTAATCTGCCCAGAATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTTTTCATATCCAAGCTGAATACTACCATGTAATCTGCCCAGAATT  382

seq1  TTCATAGACGTAAAAGCCAAATCAGCTCCCTTGCTTTTAGGAGATGGCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATAGACGTAAAAGCCAAATCAGCTCCCTTGCTTTTAGGAGATGGCTT  432

seq1  GCAAAGGCTACTTTATGACAAAACCGCTCTTTATATTGCTTGGTTTTTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAGGCTACTTTATGACAAAACCGCTCTTTATATTGCTTGGTTTTTTT  482

seq1  ACGCGATTCACTTTGGGGTTCTAGTCTAAATGGCTTGGGAATCAGACACC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGCGATTCACTTTGGGGTTCTAGTCTAAATGGCTTGGGAATCAGACACC  532

seq1  TCGGGAATCAGCTAAAAGCTTATGCTGGGTCATCTGCCTGCCATTTCATC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGGGAATCAGCTAAAAGCTTATGCTGGGTCATCTGCCTGCCATTTCATC  582

seq1  AGCTGGCTGCAGTGGCCAGCTGGAGTTTGGAATATTATAAATTAGACGGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGGCTGCAGTGGCCAGCTGGAGTTTGGAATATTATAAATTAGACGGG  632

seq1  AGTTTTCTCCCTTGATTGTTTTAGGGACCATGCTGTAGTGCCCCCCCCCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTCTCCCTTGATTGTTTTAGGGACCATGCTGTAGTGCCCCCCCCCA  682

seq1  ATGGATTTGCAGCAGAAAATGCCAAATTCAAGTCTTCTATTCTTGTCTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGATTTGCAGCAGAAAATGCCAAATTCAAGTCTTCTATTCTTGTCTTT  732

seq1  AAGCCCCCACTTATGCAAGAAAACTAGGTAGACATTAAGAAGTCCATGTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCCCCACTTATGCAAGAAAACTAGGTAGACATTAAGAAGTCCATGTT  782

seq1  TCTTAATCTTTGCTTTTTTTCTCTTTGTTAAAATAACACTTCATGAATAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAATCTTTGCTTTTTTTCTCTTTGTTAAAATAACACTTCATGAATAG  832

seq1  GTCCTCTGGTGGTGTGCTCCCATTATAAGGAAAGGTCTTAATTTATCCTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTCTGGTGGTGTGCTCCCATTATAAGGAAAGGTCTTAATTTATCCTT  882

seq1  CACAATGAAAAGTATCCTCTCCCTCTAACTTAACTGTGTCTCTGCAGGGT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAATGAAAAGTATCCTCTCCCTCTAACTTAACTGTGTCTCTGCAGGGT  932

seq1  GCCTCCCACTTGCCTGCAATTAGCTGGGCTAGATGTAGTCTGTCATCAAA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCCCACTTGCCTGCAATTAGCTGGGCTAGATGTAGTCTGTCATCAAA  982

seq1  TTATCATAGGTGCACTTCACCAATTTATAAATTGCTCGGAGGAGGAAGAG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCATAGGTGCACTTCACCAATTTATAAATTGCTCGGAGGAGGAAGAG  1032

seq1  GCGAAGTTCAGCAAAAGACGGAAGTAGCCGGGGAACTGCAGCTGCCACAG  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGAAGTTCAGCAAAAGACGGAAGTAGCCGGGGAACTGCAGCTGCCACAG  1082

seq1  TCCTAGACGGAATTC  1115
      |||||||||||||||
seq2  TCCTAGACGGAATTC  1097


seq1: chr16_72799599_72800449
seq2: B6Ng01-211G19.g_67_918

seq1  GAATTCACCCTGAAGTCCACGTTGCTTATTGCTCTTCATCTAACAACAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACCCTGAAGTCCACGTTGCTTATTGCTCTTCATCTAACAACAGT  50

seq1  CAAAGGGTTAAACTTCATAGCCTCTATTTGTGTGTTTATTTTATTTCCAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGGGTTAAACTTCATAGCCTCTATTTGTGTGTTTATTTTATTTCCAT  100

seq1  TTGTTCAGTACCCATTAAAAGTATAATATTACATTGGTAACTCTCATTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTCAGTACCCATTAAAAGTATAATATTACATTGGTAACTCTCATTAA  150

seq1  AATGTTGAGTAACTTCTCTTATTGGATGACCATAAAACCATTTAAATGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTTGAGTAACTTCTCTTATTGGATGACCATAAAACCATTTAAATGGA  200

seq1  ATTTCTACTTAAACAAGTGGAAAATATTTCTGCTTCCGTCCTTGCCTCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTACTTAAACAAGTGGAAAATATTTCTGCTTCCGTCCTTGCCTCTT  250

seq1  TTTACTGGGTGTTTGTTGTCCATGGTCCTTGCAGAGTCATAAATAAAACC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACTGGGTGTTTGTTGTCCATGGTCCTTGCAGAGTCATAAATAAAACC  300

seq1  TGCCATTTTTTTTTTAAATTCCTGGTGAGGATGCATTTTCAATAGCATAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCATTTTTTTTTTAAATTCCTGGTGAGGATGCATTTTCAATAGCATAT  350

seq1  AAAGGGAGAGTATAGAAAAGGGTGGCCCCAGTTAGGAAATTAGCTCATTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGGAGAGTATAGAAAAGGGTGGCCCCAGTTAGGAAATTAGCTCATTA  400

seq1  TGGTCAAATGCAGTGAACCAAACGACTTATCCCGTTGAAGATGCTGAGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCAAATGCAGTGAACCAAACGACTTATCCCGTTGAAGATGCTGAGCT  450

seq1  CCTAAAAATAGTCAGACTTTTCGAAATTAGACAATAAAAGAAAAATGCGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAAAATAGTCAGACTTTTCGAAATTAGACAATAAAAGAAAAATGCGA  500

seq1  TTCCTTGTTTTTATTTGTCACTTTAGTGGCATTTTTATTATTTCCTTCAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTGTTTTTATTTGTCACTTTAGTGGCATTTTTATTATTTCCTTCAA  550

seq1  ATGTTTTAGCACCAGATATAAATGCCTCCATCCACAAGGCTAGTCCTTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTTTAGCACCAGATATAAATGCCTCCATCCACAAGGCTAGTCCTTTC  600

seq1  CATTGGATAGAGGGAGGACTCTTGAATGTAAAAGGAGGAGTCTGTGAGAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGGATAGAGGGAGGACTCTTGAATGTAAAAGGAGGAGTCTGTGAGAT  650

seq1  GGATGGGGTTGGGAGCAAAGGTGGTGCTCCCATTACACCCTCTCACAACC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGGGGTTGGGAGCAAAGGTGGTGCTCCCATTACACCCTCTCACAACC  700

seq1  TGAGGATGCTGACCTCAGCCCATAGGTGCTTCTGCAGCCTCTGTCTTTCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGATGCTGACCTCAGCCCATAGGTGCTTCTGCAGCCTCTGTCTTTCA  750

seq1  TGTGTTGC-TCAGAATCCTCTCATCGATATTTTTTCCCATTATTAGAGAA  799
      |||||||| ||||||||||||||||||||||||| |||||||||||||||
seq2  TGTGTTGCTTCAGAATCCTCTCATCGATATTTTTCCCCATTATTAGAGAA  800

seq1  ACAAATAAACTCATCTCTGCTGGGATTAATTTGCCCCAGCCTGAAGCAAT  849
       ||||| ||||| |||||| | |||||| |||||||||||||||| ||||
seq2  TCAAATCAACTCTTCTCTGTTTGGATTATTTTGCCCCAGCCTGAAACAAT  850

seq1  GA  851
      ||
seq2  GA  852


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