BAC Information

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BAC

Clone NameB6Ng01-213D19
Chromosome16 (Build37)
Map Location 92,278,740 - 92,420,087
singlet/doubletdoublet
Overlap geneKcne2, 1190017O12Rik, 4930563D23Rik, Kcne1, Dscr1
Upstream geneIfnar2, Il10rb, Ifnar1, LOC665939, LOC665947, Ifngr2, Tmem50b, ORF28, Gart, Son, Donson, Cryzl1, LOC100040653, Itsn1, Atp5o, Mrps6, Slc5a3
Downstream gene2410124H12Rik, Clic6, Runx1, EG666023, LOC100040747
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-213D19.bB6Ng01-213D19.g
ACCGA030826GA030827
length1,0221,141
definitionB6Ng01-213D19.b B6Ng01-213D19.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(92,278,740 - 92,279,760)(92,418,972 - 92,420,087)
sequence
gaattccaaccctgacttcctttggtgatgaacagtaacatggaaatgta
agctgaataaaccctttcctccccaacttgcttcttggtcatgatgtttg
tgcaggaatagaaaccctgacaaagacatcaagttatacccaagtggcta
tttcttgtttatctagaagaacacattaactatgtccctccccagaagca
tgtactgaacacaatccccagcatggcggtggaaggagttggagagacac
tgagagagacaaacatcagcagaataccttcctctactccaggagcgctg
gcagggaggatctttaaatgtagtatctgtacatttgttacattgcaagc
aataagctgtagatgttcgtggtaatggtgcaccttaggtggcttcctgc
tccatcttgtgagttataaccaaagaccatagactaggtaatttatgata
gggaggagtccattggctcacagttctaaaaggcagagaagtctaagact
gaaggggaagagctaagggccttctcattataccttattgtggcagcagg
cacatagtaagatgaacagcatgaaccaagagaaatgaacttccaagctc
ctagacttccagctatttacaagaacccatttagaagtgtggaatcctca
tgatgtacatacctcctgtgaggtctaattccatccaccgtcgtgctgga
gactgtttctggcacatgcttctggggaggaacacagtcaaaccataaca
ggtatgcagctaatgtcttctagataaaaaataaatagccactcaggtat
gacttgacctttctcaaggcctttgtccttcaaggtcagctagaggccct
gactgcagaggaccgcctatctgcaaaatcgtatctcatgctgtagagat
gaaagagattcagtgtagatgccaacacacctttcaaagactggctttag
ttaccacttcctgaattctctttcctctgagcttccagcatatggtcctt
tggggttctggaggatgctgca
gaattccagcagagcaaggaactgcctggtctaagtggatacttctgcct
tgtaagggtctctactgtgtgtgttaccagcctggcgaaggccccgcttt
tgtgttacatattggaaataaaccaggaaccctgaagccctgtttggacc
tgggctggagggtcagcagtgccagcctggctgtgagcatcagttttcta
agttcccctccacagtttgtcattttagagtcttgggttctcaccactaa
tgctagttttgagcagccacggtgaatcagttggcagatgtgcttttaaa
ccctggagcatagtagaccatcacctaaccaccaggttaggaagtgaacg
attataaaagaaataaatagaacatttagatgagatcacaggttaagttc
cggatggtgcccacgtaagtagttcacgtctgcgctcatgctgacccatg
tcccttaatgtctgactctccttttacccgctgcctctgcgggcctccag
gggcacaaggcacagcaagccagcactcaggctaagcatgtttgggcaca
gcaccttagtcatggacagggacagtgaaagcatgaatcaggaaggcaga
gggcagagaaactgagacacgcacgaggctttggtcataacccagcgccc
aagagctgactgcgcagcagtaaaaccccaagtaaagacagaaagttggt
gccagggactggggtgacgctgtcatgggcctgacctggctttttttttt
ttttttttaatttaagaatgtggatttgggggacttttggatttaaaagt
ggtggaatgcttttaatgggggcttaatgggccatcctggtaggaataat
ggaaagctttggttgctgagaagtgatttgaactgttcagacctggctca
aagaggtttcagaagaggagagtttgaagtattgaaattctagagtctgt
tcctgtgggtgttttggtgaaagaattgtggctgcttttttgcctctgtc
tgaagaactctaccctggaggcttagggtgaagaagagtatatttatttg
ccattgacaaatcaagtctcaaaaaaagccatgcaagagacttttgttct
ctggttagccttcatgaagaacatttttggaacgagcctag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_92278740_92279760
seq2: B6Ng01-213D19.b_45_1066

seq1  GAATTCCAACCCTGACTTCCTTTGGTGATGAACAGTAACATGGAAATGTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAACCCTGACTTCCTTTGGTGATGAACAGTAACATGGAAATGTA  50

seq1  AGCTGAATAAACCCTTTCCTCCCCAACTTGCTTCTTGGTCATGATGTTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGAATAAACCCTTTCCTCCCCAACTTGCTTCTTGGTCATGATGTTTG  100

seq1  TGCAGGAATAGAAACCCTGACAAAGACATCAAGTTATACCCAAGTGGCTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGGAATAGAAACCCTGACAAAGACATCAAGTTATACCCAAGTGGCTA  150

seq1  TTTCTTGTTTATCTAGAAGAACACATTAACTATGTCCCTCCCCAGAAGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTGTTTATCTAGAAGAACACATTAACTATGTCCCTCCCCAGAAGCA  200

seq1  TGTACTGAACACAATCCCCAGCATGGCGGTGGAAGGAGTTGGAGAGACAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACTGAACACAATCCCCAGCATGGCGGTGGAAGGAGTTGGAGAGACAC  250

seq1  TGAGAGAGACAAACATCAGCAGAATACCTTCCTCTACTCCAGGAGCGCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAGAGACAAACATCAGCAGAATACCTTCCTCTACTCCAGGAGCGCTG  300

seq1  GCAGGGAGGATCTTTAAATGTAGTATCTGTACATTTGTTACATTGCAAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGGAGGATCTTTAAATGTAGTATCTGTACATTTGTTACATTGCAAGC  350

seq1  AATAAGCTGTAGATGTTCGTGGTAATGGTGCACCTTAGGTGGCTTCCTGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAGCTGTAGATGTTCGTGGTAATGGTGCACCTTAGGTGGCTTCCTGC  400

seq1  TCCATCTTGTGAGTTATAACCAAAGACCATAGACTAGGTAATTTATGATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATCTTGTGAGTTATAACCAAAGACCATAGACTAGGTAATTTATGATA  450

seq1  GGGAGGAGTCCATTGGCTCACAGTTCTAAAAGGCAGAGAAGTCTAAGACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGGAGTCCATTGGCTCACAGTTCTAAAAGGCAGAGAAGTCTAAGACT  500

seq1  GAAGGGGAAGAGCTAAGGGCCTTCTCATTATACCTTATTGTGGCAGCAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGGGAAGAGCTAAGGGCCTTCTCATTATACCTTATTGTGGCAGCAGG  550

seq1  CACATAGTAAGATGAACAGCATGAACCAAGAGAAATGAACTTCCAAGCTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATAGTAAGATGAACAGCATGAACCAAGAGAAATGAACTTCCAAGCTC  600

seq1  CTAGACTTCCAGCTATTTACAAGAACCCATTTAGAAGTGTGGAATCCTCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGACTTCCAGCTATTTACAAGAACCCATTTAGAAGTGTGGAATCCTCA  650

seq1  TGATGTACATACCTCCTGTGAGGTCTAATTCCATCCACCGTCGTGCTGGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGTACATACCTCCTGTGAGGTCTAATTCCATCCACCGTCGTGCTGGA  700

seq1  GACTGTTTCTGGCACATGCTTCTGGGGAGGAACACAGTCAAACCATAACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGTTTCTGGCACATGCTTCTGGGGAGGAACACAGTCAAACCATAACA  750

seq1  GGTATGCAGCTAATGTCTTCTAGATAAAAAATAAATAGCCACTCAGGTAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATGCAGCTAATGTCTTCTAGATAAAAAATAAATAGCCACTCAGGTAT  800

seq1  GACTTGACC-TTCTCAAGGCCTTTGTCCTTCAAGGTCAGCTAGAGGCCCT  849
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  GACTTGACCTTTCTCAAGGCCTTTGTCCTTCAAGGTCAGCTAGAGGCCCT  850

seq1  GACTGCAGAGGACCGCCTATCTGCAAAATCGTATCTCATGCTGTAGAGAT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGCAGAGGACCGCCTATCTGCAAAATCGTATCTCATGCTGTAGAGAT  900

seq1  GAAAGAGATTCAGTGTAGATGCCAACACACCTTTCCAAAGACTGGC-TTA  948
      |||||||||||||||||||||||||||||||||| ||||||||||| |||
seq2  GAAAGAGATTCAGTGTAGATGCCAACACACCTTT-CAAAGACTGGCTTTA  949

seq1  GTTACCACTTCCTGAATTCTCTTTCCTCTGAGCTACCAGCATATTGTCCT  998
      |||||||||||||||||||||||||||||||||| ||||||||| |||||
seq2  GTTACCACTTCCTGAATTCTCTTTCCTCTGAGCTTCCAGCATATGGTCCT  999

seq1  TTGGGGTTCTGGAGGATGCTGCA  1021
      |||||||||||||||||||||||
seq2  TTGGGGTTCTGGAGGATGCTGCA  1022

seq1: chr16_92418972_92420087
seq2: B6Ng01-213D19.g_68_1208 (reverse)

seq1  CTAGGCTTGTT-CAAAAATGTTCTTCATGAGGCTTAACCAGAGAAC-AAA  48
      ||||||| ||| |||||||||||||||||| |  |||||||||||| |||
seq2  CTAGGCTCGTTCCAAAAATGTTCTTCATGAAGGCTAACCAGAGAACAAAA  50

seq1  GTCTC-TGCTGGGCTTTTTTTGAGACTTGCTTTGTCAAT-GCAACTAATA  96
      ||||| |||  |||||||||||||||||| ||||||||| |||| ||| |
seq2  GTCTCTTGCATGGCTTTTTTTGAGACTTGATTTGTCAATGGCAAATAA-A  99

seq1  TA-ACTC-TCTTCA-CCTTAGCCTC--AGGTAGAG-TCTTCAGACA-AGG  139
      || |||| |||||| ||| ||||||   ||||||| |||||||||| |||
seq2  TATACTCTTCTTCACCCTAAGCCTCCAGGGTAGAGTTCTTCAGACAGAGG  149

seq1  GCAAAAAGCAGCCAC-ATTC-TTCACCAAAACA-CCACAGGAACAGACTC  186
        ||||||||||||| |||| |||||||||||| ||||||||||||||||
seq2  CAAAAAAGCAGCCACAATTCTTTCACCAAAACACCCACAGGAACAGACTC  199

seq1  TAGAATTTC-ATAC-TCAAACTCTCCTCTTCTGAAACCTC-TTGGGCCAG  233
      ||||||||| |||| ||||||||||||||||||||||||| ||| |||||
seq2  TAGAATTTCAATACTTCAAACTCTCCTCTTCTGAAACCTCTTTGAGCCAG  249

seq1  GTCTGAACAGTTCAAATCAC-TCTCAGCAA-CAAAGCTTTCCA-TATTCC  280
      |||||||||||||||||||| ||||||||| |||||||||||| ||||||
seq2  GTCTGAACAGTTCAAATCACTTCTCAGCAACCAAAGCTTTCCATTATTCC  299

seq1  TACCAGGATGGCCCATTAAG-CCCCATTTAAAGCATTCCACCACTTTTTA  329
      |||||||||||||||||||| ||||||| ||||||||||||||| |||||
seq2  TACCAGGATGGCCCATTAAGCCCCCATTAAAAGCATTCCACCAC-TTTTA  348

seq1  AATCC-AAAGT-CCCCAAATCCACATTCTTAAATT-AAAAAAAAAAAAAA  376
      ||||| ||||| ||||||||||||||||||||||| ||||||||||||||
seq2  AATCCAAAAGTCCCCCAAATCCACATTCTTAAATTAAAAAAAAAAAAAAA  398

seq1  AAAGCCAGGTCAGGCCCATGACAGCGTCACCCCAGTCCCTGGCACCAAC-  425
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  AAAGCCAGGTCAGGCCCATGACAGCGTCACCCCAGTCCCTGGCACCAACT  448

seq1  TTCTGTC-TTACTTGGGGTTTTACTGCTGCGCAGTCAGCTCTTGGGCGCT  474
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTCTTTACTTGGGGTTTTACTGCTGCGCAGTCAGCTCTTGGGCGCT  498

seq1  GGGTTATGACCAAAGCCTCGTGCGTGTCTCAG-TTCTCTGCCCTCTGCCT  523
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  GGGTTATGACCAAAGCCTCGTGCGTGTCTCAGTTTCTCTGCCCTCTGCCT  548

seq1  TCCTGATTCATGCTTTCACTGTCCCTGTCCATGACTAAGGTGCTGTGCCC  573
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGATTCATGCTTTCACTGTCCCTGTCCATGACTAAGGTGCTGTGCCC  598

seq1  AAACATGCTTAGCCTGAGTGCTGGCTTGCTGTGCCTTGTGCCCCTGGAGG  623
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATGCTTAGCCTGAGTGCTGGCTTGCTGTGCCTTGTGCCCCTGGAGG  648

seq1  CCCGCAGAGGCAGCGGGTAAAAGGAGAGTCAGACATTAAGGGACATGGGT  673
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGCAGAGGCAGCGGGTAAAAGGAGAGTCAGACATTAAGGGACATGGGT  698

seq1  CAGCATGAGCGCAGACGTGAACTACTTACGTGGGCACCATCCGGAACTTA  723
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCATGAGCGCAGACGTGAACTACTTACGTGGGCACCATCCGGAACTTA  748

seq1  ACCTGTGATCTCATCTAAATGTTCTATTTATTTCTTTTATAATCGTTCAC  773
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGTGATCTCATCTAAATGTTCTATTTATTTCTTTTATAATCGTTCAC  798

seq1  TTCCTAACCTGGTGGTTAGGTGATGGTCTACTATGCTCCAGGGTTTAAAA  823
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTAACCTGGTGGTTAGGTGATGGTCTACTATGCTCCAGGGTTTAAAA  848

seq1  GCACATCTGCCAACTGATTCACCGTGGCTGCTCAAAACTAGCATTAGTGG  873
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACATCTGCCAACTGATTCACCGTGGCTGCTCAAAACTAGCATTAGTGG  898

seq1  TGAGAACCCAAGACTCTAAAATGACAAACTGTGGAGGGGAACTTAGAAAA  923
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAACCCAAGACTCTAAAATGACAAACTGTGGAGGGGAACTTAGAAAA  948

seq1  CTGATGCTCACAGCCAGGCTGGCACTGCTGACCCTCCAGCCCAGGTCCAA  973
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATGCTCACAGCCAGGCTGGCACTGCTGACCCTCCAGCCCAGGTCCAA  998

seq1  ACAGGGCTTCAGGGTTCCTGGTTTATTTCCAATATGTAACACAAAAGCGG  1023
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGGCTTCAGGGTTCCTGGTTTATTTCCAATATGTAACACAAAAGCGG  1048

seq1  GGCCTTCGCCAGGCTGGTAACACACACAGTAGAGACCCTTACAAGGCAGA  1073
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTTCGCCAGGCTGGTAACACACACAGTAGAGACCCTTACAAGGCAGA  1098

seq1  AGTATCCACTTAGACCAGGCAGTTCCTTGCTCTGCTGGAATTC  1116
      |||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATCCACTTAGACCAGGCAGTTCCTTGCTCTGCTGGAATTC  1141