BAC Information

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BAC

Clone NameB6Ng01-213H09
Chromosome16 (Build37)
Map Location 73,501,308 - 73,680,902
singlet/doubletdoublet
Overlap genenone
Upstream geneRobo1, LOC100039310, LOC100039318, LOC100039326
Downstream geneRobo2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-213H09.bB6Ng01-213H09.g
ACCGA030982GA030983
length1,2311,078
definitionB6Ng01-213H09.b B6Ng01-213H09.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(73,679,676 - 73,680,902)(73,501,308 - 73,502,380)
sequence
gaattctctgtcgtcacagccttgcgacatgtttttttccaatgtaatat
ttttattgattatttaagaatttcatacaatgcatcatcggttcacactc
aacctacccttgtgtcccaccccacgattaaaaaatataccaagtacaat
tggtgccacccccatgctcacctgagcgcggtcaaactccccgtggccac
tgggatttcttgtgacatttaactcacttgattttcatccaggaatcact
attgccctggcctggattgcagtgatgatttgaaagctgattatctacac
attgcctatgctttcttttctccctgccccgtgcatcagcatttgccctg
aattatccccggtcccttccctcctagtttagaggtctcggacactgtta
ctctccacagaaactcctggctggatgctttgtgtctgttaggaaaaaaa
gaacgtactgaaaactcactcacgtcaatcctttcattttgctttaatga
ttttgtgagtgagtaaattggatcgtaacgctgctgaaggaggtttccgg
gcagatgtttaatggtgtaacagaggaaatatctcaggggaaactatgct
caggttagctgcaaaagtgtatgtgtctctttctgccaaagatacgggac
aaagagaatggggtagagagaggagtcaggtgacattactcggtgaatca
gtgaacgctgcctttaaaagatcgttcttttaaaacacactaagaaggta
ttttccagcttccccctctttcctctcagttgtcttcacagagatgtaac
caagcatgcaggatgtgagcgagtcaccatgatggtcgctgcacatacag
tccagagcaaaatgctgataaagagcttggtatagcagaactatctgact
cggacttttcttattttgaccagaaaggtttatcgattttttatggacga
aaccttctaagaacactgggggagtttttatagcctccttctttttcttt
tctagacatcattttgattttagaaaaataaagtatttcccttgcttcat
tttattaaatgaaaacaaacagttgagctattgtcccactgctgtatgta
tgtgtcattatgttgtttatttatacgatacagagatattgtcatccaag
gtatatatgtgccatgagcctaaatctcctactgtctctgcagcttcgcc
acccttgcttcttagaacgtttgtcttttac

gaattcagagtgtaggagagtgaatgcaatgagcttgtaacaggtccttg
ttggtgatgccaatataactgcttgcatacaaagggagtgagatcttcca
ttcatgaaatgtttgttaaccactgaaaagacaagtcccatgtgaggaga
ataatttagtactgaggtggaaacgtttgtacaatgtgtttgaacataga
atggaagaaatgcttccttcctttacttcttcatctttgataggttttca
ttcaagaagcttatattatagaggacaaaatcacctttatgtatgtattt
ctaattcatgttcaagtggtacaaattctacacagaccagggaaaagttg
gcaaatactatggaaagtgtagtgagggtatggaatagtgaaaaggtaga
aaacctcgtgtgtgtgtgtgtaaaactttatttgtatatcggacaggaga
cataccaatgccatggcacacaagtggaagtcagagaacaaatttgtggg
attaggttttctccatcaacaagatataggtttcgggaatcaaacttagg
ttaggcttggttcaagtgcctttacaggctgaagcatcaatctcttttct
ttagaaaattgccaacttagctaggtgttaagcataaggtggaatcatta
gagattatagaaaatggctttgcagtttgctacatattctaccccagagt
aaagagttatgaaggaagaacactggaaaactgtgaagacaggtttgtac
agcggaagattccttcaaagggggatattctttgaaaaatatccagaagt
agggattgttaaattaagattgatggaagggacatggaaattaaagaatg
agatggaccattcgtagggacaaaagaaagagactagcctctcataggag
cagatactgttcttgaaattaaactatcagaggataccagtctctcagca
agaatgggactctgtgttatttgatgcaagggcttggcccccttaatagt
tggcaaaaatgagcattacagatgggtagtttcatcttgcaggtcagttt
ccctgaatgcttaaaaagtacgtaccaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_73679676_73680902
seq2: B6Ng01-213H09.b_47_1277 (reverse)

seq1  GTAAAAG-CAAACTGTCTAGGAAGCAAAGGGGGTGGGCGAGCTGCAGAGG  49
      ||||||| |||||  |||| |||||||   ||||||   ||||||||| |
seq2  GTAAAAGACAAACGTTCTAAGAAGCAA---GGGTGGCGAAGCTGCAGA-G  46

seq1  GCAGTAGGGAGATTTAAGCTCAATGCACATTATATA-CTTGGATGACAAT  98
       ||||| ||||||||| |||||  ||||| |||||| |||||||||||||
seq2  ACAGTA-GGAGATTTAGGCTCATGGCACA-TATATACCTTGGATGACAAT  94

seq1  ATCTCTGTATCGTAT-AATAA--CACAT-ATGACACATACATACAGCAGT  144
      ||||||||||||||| |||||   |||| |||||||||||||||||||||
seq2  ATCTCTGTATCGTATAAATAAACAACATAATGACACATACATACAGCAGT  144

seq1  GGGACAATTAGCTCAAATTGTTTGTTTTCATTTAAATTAAAATGAAGCAA  194
      ||||||| |||||| || |||||||||||||||||  |||||||||||||
seq2  GGGACAA-TAGCTC-AACTGTTTGTTTTCATTTAA--TAAAATGAAGCAA  190

seq1  GGGAAATACTT--ATTTTCTAAAATCAAAATGATGTCTAG-AAAGAAAA-  240
      |||||||||||   |||||||||||||||||||||||||| |||||||| 
seq2  GGGAAATACTTTATTTTTCTAAAATCAAAATGATGTCTAGAAAAGAAAAA  240

seq1  -GAGGAGGCTATAAAAACT-CCCCAGTGTTCTTAGAAGGTTTCGTCCAT-  287
        ||||||||||||||||| ||||||||||||||||||||||||||||| 
seq2  GAAGGAGGCTATAAAAACTCCCCCAGTGTTCTTAGAAGGTTTCGTCCATA  290

seq1  AAAAATCGATAAACCTTTCTGGTC-AAATAAGAAAAGTCCGAGTCAGATA  336
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  AAAAATCGATAAACCTTTCTGGTCAAAATAAGAAAAGTCCGAGTCAGATA  340

seq1  GTTCTGCTATACCAAGCTCTTTATCAGCATTTTGCTCTGGACTGTATGTG  386
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTGCTATACCAAGCTCTTTATCAGCATTTTGCTCTGGACTGTATGTG  390

seq1  CAGCGACCATCATGGTGACTCGCTCACATCCTGCATGCTTGGTTACATCT  436
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCGACCATCATGGTGACTCGCTCACATCCTGCATGCTTGGTTACATCT  440

seq1  CTGTGAAGACAACTGAGAGGAAAGAGGGGGAAGCTGGAAAATACCTTCTT  486
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGAAGACAACTGAGAGGAAAGAGGGGGAAGCTGGAAAATACCTTCTT  490

seq1  AGTGTGTTTTAAAAGAACGATCTTTTAAAGGCAGCGTTCACTGATTCACC  536
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTGTTTTAAAAGAACGATCTTTTAAAGGCAGCGTTCACTGATTCACC  540

seq1  GAGTAATGTCACCTGACTCCTCTCTCTACCCCATTCTCTTTGTCCCGTAT  586
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTAATGTCACCTGACTCCTCTCTCTACCCCATTCTCTTTGTCCCGTAT  590

seq1  CTTTGGCAGAAAGAGACACATACACTTTTGCAGCTAACCTGAGCATAGTT  636
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGGCAGAAAGAGACACATACACTTTTGCAGCTAACCTGAGCATAGTT  640

seq1  TCCCCTGAGATATTTCCTCTGTTACACCATTAAACATCTGCCCGGAAACC  686
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCTGAGATATTTCCTCTGTTACACCATTAAACATCTGCCCGGAAACC  690

seq1  TCCTTCAGCAGCGTTACGATCCAATTTACTCACTCACAAAATCATTAAAG  736
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTCAGCAGCGTTACGATCCAATTTACTCACTCACAAAATCATTAAAG  740

seq1  CAAAATGAAAGGATTGACGTGAGTGAGTTTTCAGTACGTTCTTTTTTTCC  786
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATGAAAGGATTGACGTGAGTGAGTTTTCAGTACGTTCTTTTTTTCC  790

seq1  TAACAGACACAAAGCATCCAGCCAGGAGTTTCTGTGGAGAGTAACAGTGT  836
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAGACACAAAGCATCCAGCCAGGAGTTTCTGTGGAGAGTAACAGTGT  840

seq1  CCGAGACCTCTAAACTAGGAGGGAAGGGACCGGGGATAATTCAGGGCAAA  886
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGAGACCTCTAAACTAGGAGGGAAGGGACCGGGGATAATTCAGGGCAAA  890

seq1  TGCTGATGCACGGGGCAGGGAGAAAAGAAAGCATAGGCAATGTGTAGATA  936
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGATGCACGGGGCAGGGAGAAAAGAAAGCATAGGCAATGTGTAGATA  940

seq1  ATCAGCTTTCAAATCATCACTGCAATCCAGGCCAGGGCAATAGTGATTCC  986
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGCTTTCAAATCATCACTGCAATCCAGGCCAGGGCAATAGTGATTCC  990

seq1  TGGATGAAAATCAAGTGAGTTAAATGTCACAAGAAATCCCAGTGGCCACG  1036
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATGAAAATCAAGTGAGTTAAATGTCACAAGAAATCCCAGTGGCCACG  1040

seq1  GGGAGTTTGACCGCGCTCAGGTGAGCATGGGGGTGGCACCAATTGTACTT  1086
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGTTTGACCGCGCTCAGGTGAGCATGGGGGTGGCACCAATTGTACTT  1090

seq1  GGTATATTTTTTAATCGTGGGGTGGGACACAAGGGTAGGTTGAGTGTGAA  1136
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATATTTTTTAATCGTGGGGTGGGACACAAGGGTAGGTTGAGTGTGAA  1140

seq1  CCGATGATGCATTGTATGAAATTCTTAAATAATCAATAAAAATATTACAT  1186
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGATGATGCATTGTATGAAATTCTTAAATAATCAATAAAAATATTACAT  1190

seq1  TGGAAAAAAACATGTCGCAAGGCTGTGACGACAGAGAATTC  1227
      |||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAAAAAACATGTCGCAAGGCTGTGACGACAGAGAATTC  1231


seq1: chr16_73501308_73502380
seq2: B6Ng01-213H09.g_70_1147

seq1  GAATTCAGAGTGTAGGAGAGTGAATGCAATGAGCTTGTAACAGGTCCTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAGTGTAGGAGAGTGAATGCAATGAGCTTGTAACAGGTCCTTG  50

seq1  TTGGTGATGCCAATATAACTGCTTGCATACAAAGGGAGTGAGATCTTCCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTGATGCCAATATAACTGCTTGCATACAAAGGGAGTGAGATCTTCCA  100

seq1  TTCATGAAATGTTTGTTAACCACTGAAAAGACAAGTCCCATGTGAGGAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATGAAATGTTTGTTAACCACTGAAAAGACAAGTCCCATGTGAGGAGA  150

seq1  ATAATTTAGTACTGAGGTGGAAACGTTTGTACAATGTGTTTGAACATAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTTAGTACTGAGGTGGAAACGTTTGTACAATGTGTTTGAACATAGA  200

seq1  ATGGAAGAAATGCTTCCTTCCTTTACTTCTTCATCTTTGATAGGTTTTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAAGAAATGCTTCCTTCCTTTACTTCTTCATCTTTGATAGGTTTTCA  250

seq1  TTCAAGAAGCTTATATTATAGAGGACAAAATCACCTTTATGTATGTATTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAGAAGCTTATATTATAGAGGACAAAATCACCTTTATGTATGTATTT  300

seq1  CTAATTCATGTTCAAGTGGTACAAATTCTACACAGACCAGGGAAAAGTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATTCATGTTCAAGTGGTACAAATTCTACACAGACCAGGGAAAAGTTG  350

seq1  GCAAATACTATGGAAAGTGTAGTGAGGGTATGGAATAGTGAAAAGGTAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAATACTATGGAAAGTGTAGTGAGGGTATGGAATAGTGAAAAGGTAGA  400

seq1  AAACCTCGTGTGTGTGTGTGTAAAACTTTATTTGTATATCGGACAGGAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCTCGTGTGTGTGTGTGTAAAACTTTATTTGTATATCGGACAGGAGA  450

seq1  CATACCAATGCCATGGCACACAAGTGGAAGTCAGAGAACAAATTTGTGGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACCAATGCCATGGCACACAAGTGGAAGTCAGAGAACAAATTTGTGGG  500

seq1  ATTAGGTTTTCTCCATCAACAAGATATAGGTTTCGGGAATCAAACTTAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGGTTTTCTCCATCAACAAGATATAGGTTTCGGGAATCAAACTTAGG  550

seq1  TTAGGCTTGGTTCAAGTGCCTTTACAGGCTGAAGCATCAATCTCTTTTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGCTTGGTTCAAGTGCCTTTACAGGCTGAAGCATCAATCTCTTTTCT  600

seq1  TTAGAAAATTGCCAACTTAGCTAGGTGTTAAGCATAAGGTGGAATCATTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAAAATTGCCAACTTAGCTAGGTGTTAAGCATAAGGTGGAATCATTA  650

seq1  GAGATTATAGAAAATGGCTTTGCAGTTTGCTACATATTCTACCCCAGAGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATTATAGAAAATGGCTTTGCAGTTTGCTACATATTCTACCCCAGAGT  700

seq1  AAAGAGTTATGAAGGAAGAACACTGGAAAACTGTGAAGACAGGTTTGTAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGTTATGAAGGAAGAACACTGGAAAACTGTGAAGACAGGTTTGTAC  750

seq1  AGCGGAAGATTCCTTCAAAGGGGGAAATTCTTTGAAAAATAT-CAGAAGT  799
      ||||||||||||||||||||||||| |||||||||||||||| |||||||
seq2  AGCGGAAGATTCCTTCAAAGGGGGATATTCTTTGAAAAATATCCAGAAGT  800

seq1  AGGGATTGTTAAATTAAGATTGATGGAAGGGACATGGAAATTAAAGAATG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGATTGTTAAATTAAGATTGATGGAAGGGACATGGAAATTAAAGAATG  850

seq1  AGATGGACCATTCGTAGGGACAAAAGAAAGAGACTAGCCTCTCATAGGAG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGGACCATTCGTAGGGACAAAAGAAAGAGACTAGCCTCTCATAGGAG  900

seq1  CAGA-ACTGTTCTTGAATTAGAACTATCAGAGGATACCAGTCTCTCAGCA  948
      |||| |||||||||||| |  |||||||||||||||||||||||||||||
seq2  CAGATACTGTTCTTGAAATTAAACTATCAGAGGATACCAGTCTCTCAGCA  950

seq1  AGAAT-GGACTCTGTG-TATTTGATGCAAGGGCTTGGCCCCCTT-ATAGG  995
      ||||| |||||||||| ||||||||||||||||||||||||||| |||| 
seq2  AGAATGGGACTCTGTGTTATTTGATGCAAGGGCTTGGCCCCCTTAATAGT  1000

seq1  TTGGGAAAATGAGCATTACAGATGGG-AGTTTCCATC-TGCAGGTCAGTT  1043
      | |  ||||||||||||||||||||| ||||| |||| ||||||||||||
seq2  TGGCAAAAATGAGCATTACAGATGGGTAGTTT-CATCTTGCAGGTCAGTT  1049

seq1  CCCCTGAAGTCTTAAAAAGGTAAGTACCAA  1073
       |||||||  |||||||| ||| |||||||
seq2  TCCCTGAATGCTTAAAAA-GTACGTACCAA  1078


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