BAC Information

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BAC

Clone NameB6Ng01-213N07
Chromosome16 (Build37)
Map Location 72,162,250 - 72,275,888
singlet/doubletdoublet
Overlap genenone
Upstream genenone
Downstream geneRobo1, LOC100039310, LOC100039318
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-213N07.bB6Ng01-213N07.g
ACCGA031247GA031248
length1,0851,050
definitionB6Ng01-213N07.b B6Ng01-213N07.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(72,274,808 - 72,275,888)(72,162,250 - 72,163,301)
sequence
gaattcacttctagctcaggggtctttggtctctgcttctgctgtaaacg
gtgtcttgagctatagggtaccttttattgttgttgaattatcatggaca
accatgtttgcttacaacattatcaccaaaatctttctgttcagtttaaa
tgaaaagtaaaatgttgactacagaagtttaaaattaatttaggtaattt
ttatttgttcctcctgcacaaagtctatgttcctgtttttttatccaaat
aaaaaatatgattcaaaaaagtatgattcaaattaattgttaattctctc
cagctccatatttaaccatgtcttcttgtatcccttttctcatattcaaa
gtagatatgtaacctgaaaaattttaccaacattctctatgtttactaaa
ttcaagttgtccatcatagttaaaaaccttcaagttatggtttcagtgtc
ttagaaacaggtttttttttttttttttttttgtatagccttatatgtcc
tgggcttagctctgtagaccaggctggcctcaaaccaagagatccatcta
cctctgcctccagattgccggggttaaaactctgcacctttgcctggaaa
gtatgttcttgaggcagaacctttatatacattttctggaaaggcatatt
tataaaatatttcatcatcaatttttttcaaaaggggaatataacaggaa
cttatgattgaaattcatatatcaatttacagtttagggacaaaaatgat
actatgtgatactactactgacagtttaggtaataattcctaggtaactt
ctttagattttagaaaagaatcatatagaatgggaagactataggtagat
aatcaatttttggcataaaaatttatatggcctctactcttacgaaaaac
ttatataaataaatggcaaaacaaatttactagaaccaatattctaatct
tgttttgcagaatgttctttgttcttaaatggctaagttgaaaggacact
tgaaggtgatttgctgtctaaaatgaacaagttatttgaaaaaaaagaaa
tctgttttgactagtatcaacagaaactgataagt

attgagcaattcatatatgttgttagcacttgatatcattttatttctag
gatagtgtttattaaatgaaatttattattattattttaacaagtagatg
caggatatggactcataatagcattgctcaatttgtccatggaaggtctt
gtttttcaagtgaaaggaggtgaattctcatcgttagcggccaagaccaa
agctcatccctgtgattcaatgagcaattgttctgttgttgtgttttccc
tgatgaagagcactgctctaactctcagcattccttcagtgcttgtaatt
ctttgaaacatgggctttcctgcatccactttggcatgcttgctgtcttt
gttcagccctttaggtagttatgttgctgaaacatttggggtgtattttc
tgacattactaggagtcagccctgaaaacatacaaataacattatacata
ttgagttggttatatttataaatacacacacacacacaacacacatgcat
gtgacaattaccaagagtctataaatttgaaggagaacagaagaaatata
tgggagcactcataagcatgaaagggaaggggaaattctataagtatatt
atcatatattttaaaaataatcgggtgtggaggcagcagaatgtgatagc
agcatctgggaaggtgcctgtctcaaaaacggcagtttcagtgttgatca
cataatctgtctcagtaagtcataaaggaagacttttaaattctcctcaa
tttgtgaccttgtgcacctacctgaacaaaaaaaagtgcacaaaaataca
tacattgtgcacaaaagattaattaaaatgttgcctaatttgtaccaaac
tattctgcatgcccacataaaatacatatatttaatttaaaaataatttt
ttcatgatttaacctttatgctcattgcacatttaaaatttattttcttc
tttgtgttaaattcctttggctgccatcttcacagctttatagttgagga
tatcatattcatggctgtaaatgttatgagcgtgttacattgaaaatttc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_72274808_72275888
seq2: B6Ng01-213N07.b_50_1134 (reverse)

seq1  ACTTATCAGTTTCTGTTGGATACTAGTCAAAACAGAATTTCTTTTTTATC  50
      ||||||||||||||||| ||||||||||||||||| ||||||||||| ||
seq2  ACTTATCAGTTTCTGTT-GATACTAGTCAAAACAG-ATTTCTTTTTTTTC  48

seq1  AAATAAC-TGTTCATTTTAGACAGCAAATCACC-TCAAGTGTCCTTTCAA  98
      ||||||| ||||||||||||||||||||||||| ||||||||||||||||
seq2  AAATAACTTGTTCATTTTAGACAGCAAATCACCTTCAAGTGTCCTTTCAA  98

seq1  CTTAGCCATCTAAGAACAAAG-ACATTCTGCAAAAC-AGATTAG-ATATT  145
      ||||||||| ||||||||||| |||||||||||||| ||||||| |||||
seq2  CTTAGCCATTTAAGAACAAAGAACATTCTGCAAAACAAGATTAGAATATT  148

seq1  GGTTTCTAGTAAATTTGTTTTGCCATTTATTTATATAAGTTTTTCGTAAG  195
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  GG-TTCTAGTAAATTTGTTTTGCCATTTATTTATATAAGTTTTTCGTAAG  197

seq1  AGTAGAGGCCATATAAA-TTTTATGCC-AAAATTGATTATCTACCTATAG  243
      ||||||||||||||||| ||||||||| ||||||||||||||||||||||
seq2  AGTAGAGGCCATATAAATTTTTATGCCAAAAATTGATTATCTACCTATAG  247

seq1  TCTTCCCATTCTATATGATTCTTTTCTAAAATCTAAAGAAGTTACCTAGG  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCCCATTCTATATGATTCTTTTCTAAAATCTAAAGAAGTTACCTAGG  297

seq1  AATTATTACCTAAACTGTCAGTAGTAGTATCACATAGTATCATTTTTGTC  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATTACCTAAACTGTCAGTAGTAGTATCACATAGTATCATTTTTGTC  347

seq1  CCTAAACTGTAAATTGATATATGAATTTCAATCATAAGTTCCTGTTATAT  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAACTGTAAATTGATATATGAATTTCAATCATAAGTTCCTGTTATAT  397

seq1  TCCCCTTTTGAAAAAAATTGATGATGAAATATTTTATAAATATGCCTTTC  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCTTTTGAAAAAAATTGATGATGAAATATTTTATAAATATGCCTTTC  447

seq1  CAGAAAATGTATATAAAGGTTCTGCCTCAAGAACATACTTTCCAGGCAAA  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAAATGTATATAAAGGTTCTGCCTCAAGAACATACTTTCCAGGCAAA  497

seq1  GGTGCAGAGTTTTAACCCCGGCAATCTGGAGGCAGAGGTAGATGGATCTC  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCAGAGTTTTAACCCCGGCAATCTGGAGGCAGAGGTAGATGGATCTC  547

seq1  TTGGTTTGAGGCCAGCCTGGTCTACAGAGCTAAGCCCAGGACATATAAGG  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTTTGAGGCCAGCCTGGTCTACAGAGCTAAGCCCAGGACATATAAGG  597

seq1  CTATACAAAAAAAAAAAAAAAAAAAAACCTGTTTCTAAGACACTGAAACC  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATACAAAAAAAAAAAAAAAAAAAAACCTGTTTCTAAGACACTGAAACC  647

seq1  ATAACTTGAAGGTTTTTAACTATGATGGACAACTTGAATTTAGTAAACAT  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACTTGAAGGTTTTTAACTATGATGGACAACTTGAATTTAGTAAACAT  697

seq1  AGAGAATGTTGGTAAAATTTTTCAGGTTACATATCTACTTTGAATATGAG  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAATGTTGGTAAAATTTTTCAGGTTACATATCTACTTTGAATATGAG  747

seq1  AAAAGGGATACAAGAAGACATGGTTAAATATGGAGCTGGAGAGAATTAAC  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGGATACAAGAAGACATGGTTAAATATGGAGCTGGAGAGAATTAAC  797

seq1  AATTAATTTGAATCATACTTTTTTGAATCATATTTTTTATTTGGATAAAA  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAATTTGAATCATACTTTTTTGAATCATATTTTTTATTTGGATAAAA  847

seq1  AAACAGGAACATAGACTTTGTGCAGGAGGAACAAATAAAAATTACCTAAA  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGGAACATAGACTTTGTGCAGGAGGAACAAATAAAAATTACCTAAA  897

seq1  TTAATTTTAAACTTCTGTAGTCAACATTTTACTTTTCATTTAAACTGAAC  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTTTAAACTTCTGTAGTCAACATTTTACTTTTCATTTAAACTGAAC  947

seq1  AGAAAGATTTTGGTGATAATGTTGTAAGCAAACATGGTTGTCCATGATAA  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGATTTTGGTGATAATGTTGTAAGCAAACATGGTTGTCCATGATAA  997

seq1  TTCAACAACAATAAAAGGTACCCTATAGCTCAAGACACCGTTTACAGCAG  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAACAACAATAAAAGGTACCCTATAGCTCAAGACACCGTTTACAGCAG  1047

seq1  AAGCAGAGACCAAAGACCCCTGAGCTAGAAGTGAATTC  1081
      ||||||||||||||||||||||||||||||||||||||
seq2  AAGCAGAGACCAAAGACCCCTGAGCTAGAAGTGAATTC  1085


seq1: chr16_72162250_72163301
seq2: B6Ng01-213N07.g_77_1126

seq1  ATTGAGCAATTCATATATGTTGTTAGCACTTGATATCATTTTATTTCTAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAGCAATTCATATATGTTGTTAGCACTTGATATCATTTTATTTCTAG  50

seq1  GATAGTGTTTATTAAATGAAATTTATTATTATTATTTTAACAAGTAGATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGTGTTTATTAAATGAAATTTATTATTATTATTTTAACAAGTAGATG  100

seq1  CAGGATATGGACTCATAATAGCATTGCTCAATTTGTCCATGGAAGGTCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGATATGGACTCATAATAGCATTGCTCAATTTGTCCATGGAAGGTCTT  150

seq1  GTTTTTCAAGTGAAAGGAGGTGAATTCTCATCGTTAGCGGCCAAGACCAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTCAAGTGAAAGGAGGTGAATTCTCATCGTTAGCGGCCAAGACCAA  200

seq1  AGCTCATCCCTGTGATTCAATGAGCAATTGTTCTGTTGTTGTGTTTTCCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCATCCCTGTGATTCAATGAGCAATTGTTCTGTTGTTGTGTTTTCCC  250

seq1  TGATGAAGAGCACTGCTCTAACTCTCAGCATTCCTTCAGTGCTTGTAATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGAAGAGCACTGCTCTAACTCTCAGCATTCCTTCAGTGCTTGTAATT  300

seq1  CTTTGAAACATGGGCTTTCCTGCATCCACTTTGGCATGCTTGCTGTCTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGAAACATGGGCTTTCCTGCATCCACTTTGGCATGCTTGCTGTCTTT  350

seq1  GTTCAGCCCTTTAGGTAGTTATGTTGCTGAAACATTTGGGGTGTATTTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAGCCCTTTAGGTAGTTATGTTGCTGAAACATTTGGGGTGTATTTTC  400

seq1  TGACATTACTAGGAGTCAGCCCTGAAAACATACAAATAACATTATACATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACATTACTAGGAGTCAGCCCTGAAAACATACAAATAACATTATACATA  450

seq1  TTGAGTTGGTTATATTTATAAATACACACACACACACAACACACATGCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGTTGGTTATATTTATAAATACACACACACACACAACACACATGCAT  500

seq1  GTGACAATTACCAAGAGTCTATAAATTTGAAGGAGAACAGAAGAAATATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACAATTACCAAGAGTCTATAAATTTGAAGGAGAACAGAAGAAATATA  550

seq1  TGGGAGCACTCATAAGCATGAAAGGGAAGGGGAAATTCTATAAGTATATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAGCACTCATAAGCATGAAAGGGAAGGGGAAATTCTATAAGTATATT  600

seq1  ATCATATATTTTAAAAATAATCGGGTGTGGAGGCAGCAGAATGTGATAGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATATATTTTAAAAATAATCGGGTGTGGAGGCAGCAGAATGTGATAGC  650

seq1  AGCATCTGGGAAGGTGCCTGTCTCAAAAACGGCAGTTTCAGTGTTGATCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATCTGGGAAGGTGCCTGTCTCAAAAACGGCAGTTTCAGTGTTGATCA  700

seq1  CATAATCTGTCTCAGTAAGTCATAAAGGAAGACTTTT-AATTCTCCTCAA  749
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  CATAATCTGTCTCAGTAAGTCATAAAGGAAGACTTTTAAATTCTCCTCAA  750

seq1  TTTGTGACCTTGTGCACCTACCTGAACAAAAAAAAGTGCACAAAAATACA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTGACCTTGTGCACCTACCTGAACAAAAAAAAGTGCACAAAAATACA  800

seq1  TACATTGTGCACAAAAGATTAATTAAAATGTTGCCTAAATTGTACCAAAC  849
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  TACATTGTGCACAAAAGATTAATTAAAATGTTGCCTAATTTGTACCAAAC  850

seq1  TATTCTGCATGCCCACATAAAATACATATATTTAATTT-AAAATAATTTT  898
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  TATTCTGCATGCCCACATAAAATACATATATTTAATTTAAAAATAATTTT  900

seq1  TTCATGATTTAACCTTTATGCTCATTGCACATTTAAAATTTATTTTCTTC  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATGATTTAACCTTTATGCTCATTGCACATTTAAAATTTATTTTCTTC  950

seq1  TTTGTGTTATATTCCTTTTGGCTGCCATTCTTCACAGCTTTATAGTTGAG  998
      ||||||||| ||||| ||||||||||| ||||||||||||||||||||||
seq2  TTTGTGTTAAATTCC-TTTGGCTGCCA-TCTTCACAGCTTTATAGTTGAG  998

seq1  GATATCATATTCATGGGCTGTAAAATGTTATGAGTGTGTTACATTGAAAA  1048
      |||||||||||||| |||||| |||||||||||| |||||||||||||||
seq2  GATATCATATTCAT-GGCTGT-AAATGTTATGAGCGTGTTACATTGAAAA  1046

seq1  TTTC  1052
      ||||
seq2  TTTC  1050


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