BAC Information

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BAC

Clone NameB6Ng01-216F04
Chromosome16 (Build37)
Map Location 36,004,008 - 36,157,252
singlet/doubletdoublet
Overlap geneKpna1, Wdr5b, 2310056P07Rik, Ccdc58, Csta, Stfa2l1
Upstream genePtplb, Adcy5, Sec22a, Pdia5, Sema5b, EG546663, Dirc2, Hspbap1, Parp14, LOC667133, LOC100043217, Dtx3l, Parp9
Downstream geneEG433016, EG627962, EG408196, 2010005H15Rik, Stfa1, EG209324, LOC100038854, BC100530, LOC639105, Stfa2, Stfa3, Casr, EG667232, Cd86, Ildr1, LOC667246, Slc15a2, LOC667023, Eaf2, Iqcb1, LOC628101, Golgb1, Hcls1, Fbxo40, LOC100043252, Polq, Stxbp5l
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-216F04.bB6Ng01-216F04.g
ACCGA033045GA033046
length6061,069
definitionB6Ng01-216F04.b B6Ng01-216F04.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(36,156,647 - 36,157,252)(36,004,008 - 36,005,080)
sequence
gaattcagtttcaagctctggggaaagtaaggctgcagtaaagagtatgg
cttggccgactttatcttgaaatgttaaaggcactctggcttaatgttcc
acatttagctgtaccaaagtttgaacaaaacccatatatttctggtttct
gtgatatcccacactcttactgcaatgtcaaaatgtgaatcaaattatga
aggtttgatttgggatcaacctttttgctgaaatacatggactcaccttg
tcagcaatctcctgaatttctgatgtggcaggtctggcctctgacaagcc
tccctttatttttctggtgtattcagtcattgctgggcagggtgctgaga
agaaatgatccagcaagcaaagagactcagggttttaaaggtttctgtaa
actcctcctctatcatgtattatttccacagtatcagaggaactggggga
atgagtgtgatctcaggcaagtcttactgcatccctgaggggaaatgctg
agtagagttggggggaaatgagttgggggaagtgagcaaatgggtgtgcc
aagactcatgtgtggtgagcatggttcctctctgctatctctgtggcaat
aatgtt
gaattccttggatttagagatagttataggtgattgtgagccaccatgtt
ggtgctaagagttgaacccaagtactttgcaagaaaggcaagtgctctta
accgctgaaccatctcttcagccccttattttgagctgttaatacagttt
aataaaatacatctttgtagtgctggggatttaatcagccttttcaggct
agacaaacagcattgcctctgagccacctcagccctgtatatggcttttt
tttttttttaaagtttttgccatttcagtcgccaaatatcttctcctggt
agtcactaatactcattatttattctttatgagaacctctgtgtgaaaga
aaacacatgttttccctttttcctatacaaatgatggtgtgtggtacact
attgtgttttatgtcactgtgtagctctccagttatgtaacaaaagaagg
ttccttttagattgacagagtatataattccttctggaatttttaataga
gtgaagtttttagaaaatttagcttcacagcaaaacagtaaaaaataaaa
agcaaaaaccaaaccaaaccaaaagtacaagatttctttgtactgttctg
actacctacgtgtatagcgtctcccttccttagcccaagtatcagagtgg
tacattagttaatgggccactgttagcataccttcttacctggagcctgg
gatttgtttacttttaggtcctctcttagtaggatcatgccttaaagctc
ctctatttatcaccccgcccccaaagccaccaattattttattctctcca
tagttttgcctgtgccaggataagcatggttagaattacatcttgtgtag
actgttgaggttggcctttcagttggtaatgatgccacttctatttcttt
cctgtctctggcttacaccccatttcactggaactgtactctttcttata
tcattgttgtagaactgtgctttctgtggtaaatggcatttgagttttat
attctgattataaatctgagcagaatagcctgaactaatgagacaataat
aggtatgagctcatgtttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_36156647_36157252
seq2: B6Ng01-216F04.b_48_653 (reverse)

seq1  AACATTATTGGCACAGAGATTGCAGAGAGGAACCATGCTCACCACACCTG  50
      |||||||||| ||||||||| |||||||||||||||||||||||||| ||
seq2  AACATTATTGCCACAGAGATAGCAGAGAGGAACCATGCTCACCACACATG  50

seq1  AGTCTTGGCACACCCATTTGCTCACTTCCCCCAACTCATTTCCCCCCAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTTGGCACACCCATTTGCTCACTTCCCCCAACTCATTTCCCCCCAAC  100

seq1  TCTACTCAGCATTTCCCCTCAGGGATGCAGTAAGACTTGCCTGAGATCAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACTCAGCATTTCCCCTCAGGGATGCAGTAAGACTTGCCTGAGATCAC  150

seq1  ACTCATTCCCCCAGTTCCTCTGATACTGTGGAAATAATACATGATAGAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCATTCCCCCAGTTCCTCTGATACTGTGGAAATAATACATGATAGAGG  200

seq1  AGGAGTTTACAGAAACCTTTAAAACCCTGAGTCTCTTTGCTTGCTGGATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGTTTACAGAAACCTTTAAAACCCTGAGTCTCTTTGCTTGCTGGATC  250

seq1  ATTTCTTCTCAGCACCCTGCCCAGCAATGACTGAATACACCAGAAAAATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTTCTCAGCACCCTGCCCAGCAATGACTGAATACACCAGAAAAATA  300

seq1  AAGGGAGGCTTGTCAGAGGCCAGACCTGCCACATCAGAAATTCAGGAGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGAGGCTTGTCAGAGGCCAGACCTGCCACATCAGAAATTCAGGAGAT  350

seq1  TGCTGACAAGGTGAGTCCATGTATTTCAGCAAAAAGGTTGATCCCAAATC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGACAAGGTGAGTCCATGTATTTCAGCAAAAAGGTTGATCCCAAATC  400

seq1  AAACCTTCATAATTTGATTCACATTTTGACATTGCAGTAAGAGTGTGGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCTTCATAATTTGATTCACATTTTGACATTGCAGTAAGAGTGTGGGA  450

seq1  TATCACAGAAACCAGAAATATATGGGTTTTGTTCAAACTTTGGTACAGCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCACAGAAACCAGAAATATATGGGTTTTGTTCAAACTTTGGTACAGCT  500

seq1  AAATGTGGAACATTAAGCCAGAGTGCCTTTAACATTTCAAGATAAAGTCG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTGGAACATTAAGCCAGAGTGCCTTTAACATTTCAAGATAAAGTCG  550

seq1  GCCAAGCCATACTCTTTACTGCAGCCTTACTTTCCCCAGAGCTTGAAACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAAGCCATACTCTTTACTGCAGCCTTACTTTCCCCAGAGCTTGAAACT  600

seq1  GAATTC  606
      ||||||
seq2  GAATTC  606

seq1: chr16_36004008_36005080
seq2: B6Ng01-216F04.g_66_1134

seq1  GAATTCCTTGGATTTAGAGATAGTTATAGGTGATTGTGAGCCACCATGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTGGATTTAGAGATAGTTATAGGTGATTGTGAGCCACCATGTT  50

seq1  GGTGCTAAGAGTTGAACCCAAGTACTTTGCAAGAAAGGCAAGTGCTCTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCTAAGAGTTGAACCCAAGTACTTTGCAAGAAAGGCAAGTGCTCTTA  100

seq1  ACCGCTGAACCATCTCTTCAGCCCCTTATTTTGAGCTGTTAATACAGTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCGCTGAACCATCTCTTCAGCCCCTTATTTTGAGCTGTTAATACAGTTT  150

seq1  AATAAAATACATCTTTGTAGTGCTGGGGATTTAATCAGCCTTTTCAGGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAATACATCTTTGTAGTGCTGGGGATTTAATCAGCCTTTTCAGGCT  200

seq1  AGACAAACAGCATTGCCTCTGAGCCACCTCAGCCCTGTATATGGCTTTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAAACAGCATTGCCTCTGAGCCACCTCAGCCCTGTATATGGCTTTTT  250

seq1  TTTTTTTTTAAAGTTTTTGCCATTTCAGTCGCCAAATATCTTCTCCTGGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTAAAGTTTTTGCCATTTCAGTCGCCAAATATCTTCTCCTGGT  300

seq1  AGTCACTAATACTCATTATTTATTCTTTATGAGAACCTCTGTGTGAAAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCACTAATACTCATTATTTATTCTTTATGAGAACCTCTGTGTGAAAGA  350

seq1  AAACACATGTTTTCCCTTTTTCCTATACAAATGATGGTGTGTGGTACACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACACATGTTTTCCCTTTTTCCTATACAAATGATGGTGTGTGGTACACT  400

seq1  ATTGTGTTTTATGTCACTGTGTAGCTCTCCAGTTATGTAACAAAAGAAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTGTTTTATGTCACTGTGTAGCTCTCCAGTTATGTAACAAAAGAAGG  450

seq1  TTCCTTTTAGATTGACAGAGTATATAATTCCTTCTGGAATTTTTAATAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTTTAGATTGACAGAGTATATAATTCCTTCTGGAATTTTTAATAGA  500

seq1  GTGAAGTTTTTAGAAAATTTAGCTTCACAGCAAAACAGTAAAAAATAAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAGTTTTTAGAAAATTTAGCTTCACAGCAAAACAGTAAAAAATAAAA  550

seq1  AGCAAAAACCAAACCAAACCAAAAGTACAAGATTTCTTTGTACTGTTCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAAAACCAAACCAAACCAAAAGTACAAGATTTCTTTGTACTGTTCTG  600

seq1  ACTACCTACGTGTATAGCGTCTCCCTTCCTTAGCCCAAGTATCAGAGTGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACCTACGTGTATAGCGTCTCCCTTCCTTAGCCCAAGTATCAGAGTGG  650

seq1  TACATTAGTTAATGGGCCACTGTTAGCATACCTTCTTACCTGGAGCCTGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATTAGTTAATGGGCCACTGTTAGCATACCTTCTTACCTGGAGCCTGG  700

seq1  GATTTGTTTACTTTTAGGTCCTCTCTTAGTAGGATCATGCCTTAAAGCTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTGTTTACTTTTAGGTCCTCTCTTAGTAGGATCATGCCTTAAAGCTC  750

seq1  CTCTATTTATCACCCCGCCCCCAAAGCCACCAATTATTTTATTCTCTCCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTATTTATCACCCCGCCCCCAAAGCCACCAATTATTTTATTCTCTCCA  800

seq1  TAGTTTTGCCTGTGCCAGGAT-AGCATGGTTAGAATTACATCTTGTGTAG  849
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  TAGTTTTGCCTGTGCCAGGATAAGCATGGTTAGAATTACATCTTGTGTAG  850

seq1  ACTGTTGAGGTTGGCCTTTCAGTTGGTAATGATG-CACTTCTATTTCTTT  898
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  ACTGTTGAGGTTGGCCTTTCAGTTGGTAATGATGCCACTTCTATTTCTTT  900

seq1  CCTGTCTCTGGCTTACACCCCATTTCACTGGAACTGTACTCTTTCTTTAT  948
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  CCTGTCTCTGGCTTACACCCCATTTCACTGGAACTGTACTCTTTC-TTAT  949

seq1  ATCATTGTTGTAGAACTGTGCTTTCTGTGGTAAAATGGCATTTGAGTTTT  998
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  ATCATTGTTGTAGAACTGTGCTTTCTGTGGT-AAATGGCATTTGAGTTTT  998

seq1  ATATTCTGATAAATAAATCTTGAAGCAGATAAGGCCTGAACTTATGAGAC  1048
      ||||||||||  ||||||||   |||||| |  ||||||||| |||||||
seq2  ATATTCTGAT-TATAAATCT--GAGCAGA-ATAGCCTGAACTAATGAGAC  1044

seq1  AATAATAGTTATGAGCTCATGTTTT  1073
      |||||||| ||||||||||||||||
seq2  AATAATAGGTATGAGCTCATGTTTT  1069