BAC Information

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BAC

Clone NameB6Ng01-216M16
Chromosome16 (Build37)
Map Location 81,841,106 - 81,842,215
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039724, Ncam2, LOC621470
Downstream geneLOC435484, Pgk1-ps1, EG665260
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-216M16.bB6Ng01-216M16.g
ACCGA033387GA033388
length1,1111,031
definitionB6Ng01-216M16.b B6Ng01-216M16.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctgaacaatgaagacatgttattaaaaccaacccctgattaaaga
atggattttaacatttccttttccttccattttaacgtatccctttgttt
tactttccaagtttaaaaaaatgacaatatcttatctcatggaaacaaac
atttggccatatgagataataggcagcagtgagaattcgtagttacttga
gtcaaagtcatttgacgttgctaagactgaagatgaacacatcccactac
cacagtccatatgtgtacaaacatgtgcccaactgaccatggaggtgtct
aagtagtagagaaagtgggtctgatcattgttaagtgactgagaaagtaa
acaagctattgcgtgattgtattctgaagatgtaatctgcacataactct
gaagagttaagtgctgtaaggaagtatgtgaatttagagatgagaatcta
tgacaatcttaatgattattatgtaagaaaaatgagaacgtttcattttt
atgcatacacgcgcacatacacacacacacacacacacacacacacacac
acatgtatattagttatttgagaattacattcatgtttatagcatgttca
cctaccctacctcaacttttctatcatccaagagtactctcttcgattca
cgccaaattttgtttctttattcccctattaaaatcagtttgtgatgtcc
aaatattctgttttatggctatactctcagagaaacctacctttcctctc
ccagaagcttagtttgccataaatacagatctatttttgttttcctacat
ccagaccaccagttatatcagcaccatttattgaaaatgctttctttttt
tccactgtgtttttgcttctttgtcaaagatcaagtgtccataggtgtgt
cggcttacttatgggtcttcaattctattccactgatcaacctatctgtc
tctgtaagaatactctgtgttttttactgctatgcccttgtaatacactt
gcagtcttggttgcagatttccctcacaagatctttttttactgtggaaa
acttgtttgtctatctttttttccctcatttttttcatacgaagtgagaa
ttgcctctttc
gaattcctcttttgagaattctctgtttagatcatttttaataaccccgt
tttaacagggttatttgttttgttggtgtataacttcttgagttacaaat
atattttaggtattgtcagatggagggttggtgagtatcctttctcaatc
tgtaggctatcatttgatactattgatagtgttcttttacttacagaagc
ttttcagtttcatgtagtcccattcattaattgttgatcttttagttcct
gagcgattagtgctctgtttagcaagttgtctcctttttattattattat
tgttattggatattttctttatttacatttcaaatgttattcccttttcc
agttttcttcctgaaccccttgtcctatccctctcctccccctgcttcta
tgagggtgttcctcactcacccacccactcctgtattcccaccctggcat
tcccctacattggggcattgagccttcacagtaccaagggcctctccaca
cttgtctcctatatgaatgagttcaaggctattccaggctttctgttcct
ttagatttagagtatatgattttatgttgagtttttttttttctgaattt
tgacttagggtgttaaatatggatatattttcattcttctaaatgcagac
atctagctagaccagcactatttgaagatgttcttcctttccttttatgg
ttttttgattctttatccaaaataaagtgtctatatgttttcttagctta
ggagctggaaacccttccctttcttgttgtcttattcttatgtttgttca
tttcacagtatccaaaatttcctgcatgttttgtgtcatgaactttttag
attttgcaatttcgttgactgatgtatagattttgttacagtatcatcta
tgcttgatattctttccttcatatcttggattctgtgctgatgcttctgc
ctatacctttctgtctctttccaggcttccaatctcaggatagcttctgt
tccgtgttttctttataattctattgcattg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_81841106_81842215
seq2: B6Ng01-216M16.b_43_1153

seq1  GAATTCTGAACAATGAAGACATGTTATTAAAACCAACCCCTGATTAAAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGAACAATGAAGACATGTTATTAAAACCAACCCCTGATTAAAGA  50

seq1  ATGGATTTTAACATTTCCTTTTCCTTCCATTTTAACGTATCCCTTTGTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGATTTTAACATTTCCTTTTCCTTCCATTTTAACGTATCCCTTTGTTT  100

seq1  TACTTTCCAAGTTTAAAAAAATGACAATATCTTATCTCATGGAAACAAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTTCCAAGTTTAAAAAAATGACAATATCTTATCTCATGGAAACAAAC  150

seq1  ATTTGGCCATATGAGATAATAGGCAGCAGTGAGAATTCGTAGTTACTTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGGCCATATGAGATAATAGGCAGCAGTGAGAATTCGTAGTTACTTGA  200

seq1  GTCAAAGTCATTTGACGTTGCTAAGACTGAAGATGAACACATCCCACTAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAAAGTCATTTGACGTTGCTAAGACTGAAGATGAACACATCCCACTAC  250

seq1  CACAGTCCATATGTGTACAAACATGTGCCCAACTGACCATGGAGGTGTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGTCCATATGTGTACAAACATGTGCCCAACTGACCATGGAGGTGTCT  300

seq1  AAGTAGTAGAGAAAGTGGGTCTGATCATTGTTAAGTGACTGAGAAAGTAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAGTAGAGAAAGTGGGTCTGATCATTGTTAAGTGACTGAGAAAGTAA  350

seq1  ACAAGCTATTGCGTGATTGTATTCTGAAGATGTAATCTGCACATAACTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGCTATTGCGTGATTGTATTCTGAAGATGTAATCTGCACATAACTCT  400

seq1  GAAGAGTTAAGTGCTGTAAGGAAGTATGTGAATTTAGAGATGAGAATCTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGTTAAGTGCTGTAAGGAAGTATGTGAATTTAGAGATGAGAATCTA  450

seq1  TGACAATCTTAATGATTATTATGTAAGAAAAATGAGAACGTTTCATTTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAATCTTAATGATTATTATGTAAGAAAAATGAGAACGTTTCATTTTT  500

seq1  ATGCATACACGCGCACATACACACACACACACACACACACACACACACAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCATACACGCGCACATACACACACACACACACACACACACACACACAC  550

seq1  ACATGTATATTAGTTATTTGAGAATTACATTCATGTTTATAGCATGTTCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGTATATTAGTTATTTGAGAATTACATTCATGTTTATAGCATGTTCA  600

seq1  CCTACCCTACCTCAACTTTTCTATCATCCAAGAGTACTCTCTTCGATTCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACCCTACCTCAACTTTTCTATCATCCAAGAGTACTCTCTTCGATTCA  650

seq1  CGCCAAATTTTGTTTCTTTATTCCCCTATTAAAATCAGTTTGTGATGTCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCAAATTTTGTTTCTTTATTCCCCTATTAAAATCAGTTTGTGATGTCC  700

seq1  AAATATTCTGTTTTATGGCTATACTCTCAGAGAAACCTACCTTTCCTCTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATTCTGTTTTATGGCTATACTCTCAGAGAAACCTACCTTTCCTCTC  750

seq1  CCAGAAGCTTAGTTTGCCATAAATACAGATCTATTTTTGTTTTCCTACAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAAGCTTAGTTTGCCATAAATACAGATCTATTTTTGTTTTCCTACAT  800

seq1  CCAGACCACCAGTTATATCAGCACCATTTATTGAAAATGCTTTCTTTTTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGACCACCAGTTATATCAGCACCATTTATTGAAAATGCTTTCTTTTTT  850

seq1  TCCACTGTGTTTTTGCTTCTTTGTCAAAGATCAAGTGTCCATAGGTGTGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACTGTGTTTTTGCTTCTTTGTCAAAGATCAAGTGTCCATAGGTGTGT  900

seq1  CGGCTTACTTATGGGTCTTCAATTCTATTCCACTGATCAACCTATCTGTC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGCTTACTTATGGGTCTTCAATTCTATTCCACTGATCAACCTATCTGTC  950

seq1  TCTGTAAGAATACTCTGTGTTTTTTACTGCTATTGCCTTGTAATACACTT  1000
      |||||||||||||||||||||||||||||||||  ||||||||||||| |
seq2  TCTGTAAGAATACTCTGTGTTTTTTACTGCTATGCCCTTGTAATACAC-T  999

seq1  TGCAGTCTGGGTTGCAGA-TTCCCTCACAAGATC-TTTTTTACTGT-GAA  1047
      |||||||| ||||||||| ||||||||||||||| ||||||||||| |||
seq2  TGCAGTCTTGGTTGCAGATTTCCCTCACAAGATCTTTTTTTACTGTGGAA  1049

seq1  AACTTGTTTTGTCTATCCTTTTTT-CCTCATTTTTTTCCATACGAAGTTG  1096
      |||||| |||||||||| |||||| |||||||||||| ||||||||| ||
seq2  AACTTG-TTTGTCTATCTTTTTTTCCCTCATTTTTTT-CATACGAAG-TG  1096

seq1  AGAATTG-CTCTTTC  1110
      ||||||| |||||||
seq2  AGAATTGCCTCTTTC  1111