BAC Information

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BAC

Clone NameB6Ng01-218G17
Chromosome16 (Build37)
Map Location 75,427,847 - 75,549,512
singlet/doubletdoublet
Overlap geneD930038D03Rik
Upstream geneLOC665042
Downstream geneRbm11, Stch, LOC546667, Samsn1, 4930578N18Rik, LOC100039457, Nrip1, LOC100039316
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-218G17.bB6Ng01-218G17.g
ACCGA034554GA034555
length1,1641,110
definitionB6Ng01-218G17.b B6Ng01-218G17.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(75,548,346 - 75,549,512)(75,427,847 - 75,428,961)
sequence
gaattcccaattattttctataaataaaagtgcagtacagaaggtaagta
gttaaagaaagtaaaaacaaaagctatatatatatatatatatatataca
cacacacacacaaacatacacatatgtgtatatgggtatagtgatatagt
gatataaatgtctgtgtgtgtctatgagtgcctttgggcatgtacatatg
tgtgtgtgctgacactttagatatcattcttcaagttccattcacactgt
gttgaagaaagagtctctttctggcctcataataatgagccccaggaatc
tgttgaacttataagactgccattgtgtcagcctttttgtgtgaatgcta
gcggtccagttcaggcccccatcttgtgttactgactgagaaatctcctg
aagccgagaacatacatgttgatgagttctatatccacagaagagtgtgg
agaaattaatctaaatgaaagtcatcttataattacagtacaataatata
catacattcaaaaatcagtaaaatgctattatagtcataaaaggtagttt
cattgtccctgtggttgaaatgtatgaaaaagtatcaaaatcaacatata
ccagcaagaaaatttaatatcatttcttacaaatatgacgttggagcagg
atatcatgcattgaagaccaatgttgtaatgttaatctatatctgctttg
gtactttttttttataataaaaaagcatttctactaactaacaagtaggt
attcattgcaaattatttctaaaaaatgattcatatgtaatgtttcaact
aagacatcattattaatactttctgttttagatcactattttaatttttt
attgagttatttactttgtatcctgatcacatctttccttccctcctctc
cttttagtgctcctgcatcccctctcatctcaaacccccattcccttctt
ctcagaacaggggaggctcccatggatatcaaccggccttggcacatcaa
gttgcagtaaggctaggcgcatctttcgcatcttcatctattgcagctag
aacaatacagcccagctagggggcagggattcaaaggcaggccctgcaat
cagagacagcccctgcttccactttaggagtcctttttagtccagcagcc
cagcgttacttatg

gaattctctgaagtaacataaaacattgtccatccattctgatgccttaa
aagagccattggagcttccttcaggccaccgtcctcagtatctaattttt
ataagacttcttaaggagaattatgaacgataaaaggttgtgacaattct
ctctgggtttgagtagtagcacactttatagaaaattaagaattaaagta
ggcagtggtaaaatgagtcaaaaaagactcagcaagcaagaggaaatcct
ggttcgactgcagatatttgagaccaaaccaacggaggagattatgtatg
tgtctgtatctgtaatatttcatacatatactcaaatttacatttccacc
acctaggagaaagaatcagaaatgatgcaaatgcttgtggattatttatc
ctgaaggttggtggcggttctgagtgaactcctaaatactgaggcataat
ctctctgcaataactggtttggtgcaaacctaggattgccagaggaaagg
ctgggtcatcgacctagacaccatcagcttctgagagaagattctttctt
ctacacaaaaggataactataaagtaaccataataacatcaagatttaaa
agttgagtagggggacagaaatacaactaatttggtttaatcaatagtag
agaatacagctcaatatgttctcaaataagtgctaaagttgaatgccaca
cttggagtattcaaaaacatgtatcatgaaggaagacagaagagctcaga
tggtttctcaaaacagaagagagactagaaccctcagagaatcttcataa
agaggactatacaaatgaacatattaatgcaaacggcctggaagagaagt
gacaaacagaaagtgggggttttctgccttggtattaaagggtggtaaag
aagtatcttagaattaacctcgagaagagcaagtaggaggaggaaagaat
acaagggatggaagtaaggacgtcatctgaaggaaagcacattttcatgg
gccttgcatgagagtatattttacctcaacaatgatgactggtgtgtgct
gaggaactggtgatcagaaatcgatgtttaagataatgacaatatgtact
ccacctgata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_75548346_75549512
seq2: B6Ng01-218G17.b_44_1207 (reverse)

seq1  CATAAGTAACAGCTGTGCTGCTGGGTCTTCATAAGGGACTCCTAAAGTGG  50
      |||||||||| |||| |||||| || ||  | || |||||||||||||||
seq2  CATAAGTAAC-GCTGGGCTGCT-GGACT--AAAAAGGACTCCTAAAGTGG  46

seq1  GAGCAGGGGCTGTCTCTGATTGCAGGGCCTGCCTTTGAATCCCTTGCCCC  100
       |||||||||||||||||||||||||||||||||||||||||||  ||||
seq2  AAGCAGGGGCTGTCTCTGATTGCAGGGCCTGCCTTTGAATCCCTGCCCCC  96

seq1  TAGCTGGGCTGTATTG-TCTAGCTGCAATAGATGAAGATGCG-AAGATGC  148
      |||||||||||||||| ||||||||||||||||||||||||| |||||||
seq2  TAGCTGGGCTGTATTGTTCTAGCTGCAATAGATGAAGATGCGAAAGATGC  146

seq1  GCCTAGCCTTACTGCAACTTGATGTGCCAAGGCCGGTTGATATCCATGGG  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTAGCCTTACTGCAACTTGATGTGCCAAGGCCGGTTGATATCCATGGG  196

seq1  AGGCCTCCCCTGTTCTGAGAAGAAGGGAATGGGGGTTTGAGATGAGAGGG  248
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  A-GCCTCCCCTGTTCTGAGAAGAAGGGAATGGGGGTTTGAGATGAGAGGG  245

seq1  GATGCAGGAGCACTAAAAGGAGAGGAGGGAAGGAAAGATGTGATCAGGAT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCAGGAGCACTAAAAGGAGAGGAGGGAAGGAAAGATGTGATCAGGAT  295

seq1  ACAAAGTAAATAACTCAATAAAAAATTAAAATAGTGATCTAAAACAGAAA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGTAAATAACTCAATAAAAAATTAAAATAGTGATCTAAAACAGAAA  345

seq1  GTATTAATAATGATGTCTTAGTTGAAACATTACATATGAATCATTTTTTA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTAATAATGATGTCTTAGTTGAAACATTACATATGAATCATTTTTTA  395

seq1  GAAATAATTTGCAATGAATACCTACTTGTTAGTTAGTAGAAATGCTTTTT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATAATTTGCAATGAATACCTACTTGTTAGTTAGTAGAAATGCTTTTT  445

seq1  TATTATAAAAAAAAAGTACCAAAGCAGATATAGATTAACATTACAACATT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTATAAAAAAAAAGTACCAAAGCAGATATAGATTAACATTACAACATT  495

seq1  GGTCTTCAATGCATGATATCCTGCTCCAACGTCATATTTGTAAGAAATGA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTTCAATGCATGATATCCTGCTCCAACGTCATATTTGTAAGAAATGA  545

seq1  TATTAAATTTTCTTGCTGGTATATGTTGATTTTGATACTTTTTCATACAT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAAATTTTCTTGCTGGTATATGTTGATTTTGATACTTTTTCATACAT  595

seq1  TTCAACCACAGGGACAATGAAACTACCTTTTATGACTATAATAGCATTTT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAACCACAGGGACAATGAAACTACCTTTTATGACTATAATAGCATTTT  645

seq1  ACTGATTTTTGAATGTATGTATATTATTGTACTGTAATTATAAGATGACT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGATTTTTGAATGTATGTATATTATTGTACTGTAATTATAAGATGACT  695

seq1  TTCATTTAGATTAATTTCTCCACACTCTTCTGTGGATATAGAACTCATCA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTTAGATTAATTTCTCCACACTCTTCTGTGGATATAGAACTCATCA  745

seq1  ACATGTATGTTCTCGGCTTCAGGAGATTTCTCAGTCAGTAACACAAGATG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGTATGTTCTCGGCTTCAGGAGATTTCTCAGTCAGTAACACAAGATG  795

seq1  GGGGCCTGAACTGGACCGCTAGCATTCACACAAAAAGGCTGACACAATGG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCCTGAACTGGACCGCTAGCATTCACACAAAAAGGCTGACACAATGG  845

seq1  CAGTCTTATAAGTTCAACAGATTCCTGGGGCTCATTATTATGAGGCCAGA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCTTATAAGTTCAACAGATTCCTGGGGCTCATTATTATGAGGCCAGA  895

seq1  AAGAGACTCTTTCTTCAACACAGTGTGAATGGAACTTGAAGAATGATATC  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGACTCTTTCTTCAACACAGTGTGAATGGAACTTGAAGAATGATATC  945

seq1  TAAAGTGTCAGCACACACACATATGTACATGCCCAAAGGCACTCATAGAC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGTGTCAGCACACACACATATGTACATGCCCAAAGGCACTCATAGAC  995

seq1  ACACACAGACATTTATATCACTATATCACTATACCCATATACACATATGT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACAGACATTTATATCACTATATCACTATACCCATATACACATATGT  1045

seq1  GTATGTTTGTGTGTGTGTGTGTATATATATATATATATATATATAGCTTT  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGTTTGTGTGTGTGTGTGTATATATATATATATATATATATAGCTTT  1095

seq1  TGTTTTTACTTTCTTTAACTACTTACCTTCTGTACTGCACTTTTATTTAT  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTTACTTTCTTTAACTACTTACCTTCTGTACTGCACTTTTATTTAT  1145

seq1  AGAAAATAATTGGGAATTC  1167
      |||||||||||||||||||
seq2  AGAAAATAATTGGGAATTC  1164


seq1: chr16_75427847_75428961
seq2: B6Ng01-218G17.g_62_1171

seq1  GAATTCTCTGAAGTAACATAAAACATTGTCCATCCATTCTGATGCCTTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTGAAGTAACATAAAACATTGTCCATCCATTCTGATGCCTTAA  50

seq1  AAGAGCCATTGGAGCTTCCTTCAGGCCACCGTCCTCAGTATCTAATTTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGCCATTGGAGCTTCCTTCAGGCCACCGTCCTCAGTATCTAATTTTT  100

seq1  ATAAGACTTCTTAAGGAGAATTATGAACGATAAAAGGTTGTGACAATTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGACTTCTTAAGGAGAATTATGAACGATAAAAGGTTGTGACAATTCT  150

seq1  CTCTGGGTTTGAGTAGTAGCACACTTTATAGAAAATTAAGAATTAAAGTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGGGTTTGAGTAGTAGCACACTTTATAGAAAATTAAGAATTAAAGTA  200

seq1  GGCAGTGGTAAAATGAGTCAAAAAAGACTCAGCAAGCAAGAGGAAATCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGTGGTAAAATGAGTCAAAAAAGACTCAGCAAGCAAGAGGAAATCCT  250

seq1  GGTTCGACTGCAGATATTTGAGACCAAACCAACGGAGGAGATTATGTATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCGACTGCAGATATTTGAGACCAAACCAACGGAGGAGATTATGTATG  300

seq1  TGTCTGTATCTGTAATATTTCATACATATACTCAAATTTACATTTCCACC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTGTATCTGTAATATTTCATACATATACTCAAATTTACATTTCCACC  350

seq1  ACCTAGGAGAAAGAATCAGAAATGATGCAAATGCTTGTGGATTATTTATC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTAGGAGAAAGAATCAGAAATGATGCAAATGCTTGTGGATTATTTATC  400

seq1  CTGAAGGTTGGTGGCGGTTCTGAGTGAACTCCTAAATACTGAGGCATAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAGGTTGGTGGCGGTTCTGAGTGAACTCCTAAATACTGAGGCATAAT  450

seq1  CTCTCTGCAATAACTGGTTTGGTGCAAACCTAGGATTGCCAGAGGAAAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTGCAATAACTGGTTTGGTGCAAACCTAGGATTGCCAGAGGAAAGG  500

seq1  CTGGGTCATCGACCTAGACACCATCAGCTTCTGAGAGAAGATTCTTTCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGTCATCGACCTAGACACCATCAGCTTCTGAGAGAAGATTCTTTCTT  550

seq1  CTACACAAAAGGATAACTATAAAGTAACCATAATAACATCAAGATTTAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACACAAAAGGATAACTATAAAGTAACCATAATAACATCAAGATTTAAA  600

seq1  AGTTGAGTAGGGGGACAGAAATACAACTAATTTGGTTTAATCAATAGTAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGAGTAGGGGGACAGAAATACAACTAATTTGGTTTAATCAATAGTAG  650

seq1  AGAATACAGCTCAATATGTTCTCAAATAAGTGCTAAAGTTGAATGCCACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATACAGCTCAATATGTTCTCAAATAAGTGCTAAAGTTGAATGCCACA  700

seq1  CTTGGAGTATTCAAAAACATGTATCATGAAGGAAGACAGAAGAGCTCAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGAGTATTCAAAAACATGTATCATGAAGGAAGACAGAAGAGCTCAGA  750

seq1  TGGTTTCTCAAAACAGAAGAGAGACTAGAACCCTCAGAGAATCTTCATAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTTCTCAAAACAGAAGAGAGACTAGAACCCTCAGAGAATCTTCATAA  800

seq1  AGAGGACTATACAAATGAACATATTAATGCAAACGGCCTGGAAGAGAAGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGACTATACAAATGAACATATTAATGCAAACGGCCTGGAAGAGAAGT  850

seq1  GACAAACAGAAAGTGGGGGTTTTCTGCCTTGGTATT-AAGGGTGGTAAAG  899
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  GACAAACAGAAAGTGGGGGTTTTCTGCCTTGGTATTAAAGGGTGGTAAAG  900

seq1  AAGTATCTTAGAATTAACCTCGAGAAGAGCAAGTAGGAGGAGGAAAGAAT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTATCTTAGAATTAACCTCGAGAAGAGCAAGTAGGAGGAGGAAAGAAT  950

seq1  ACAAGGGATGGAAGTAAGGACGTCATCTGAAGGGAAAAGCACAATTTTCA  999
      |||||||||||||||||||||||||||||||||  ||||||| |||||||
seq2  ACAAGGGATGGAAGTAAGGACGTCATCTGAAGG--AAAGCAC-ATTTTCA  997

seq1  TGGGCCTTGCATGAGGAAGTATA-TTTACCTCAACAAATGATGACTGTGT  1048
      |||||||||||||||  |||||| ||||||||||| ||||||||||| ||
seq2  TGGGCCTTGCATGAG--AGTATATTTTACCTCAAC-AATGATGACTG-GT  1043

seq1  GTG-GCTGAAGGAAACTGTGATCAGAAATCGATGTTTTAAGATAAATGAC  1097
      ||| |||| |||||   ||||||||||||||||| |||||||| ||||||
seq2  GTGTGCTG-AGGAACTGGTGATCAGAAATCGATG-TTTAAGAT-AATGAC  1090

seq1  AATATGTACTC--ACTGATA  1115
      |||||||||||   ||||||
seq2  AATATGTACTCCACCTGATA  1110


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