BAC Information

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BAC

Clone NameB6Ng01-219I20
Chromosome16 (Build37)
Map Location 80,645,484 - 80,646,622
singlet/doubletsinglet
Overlap genenone
Upstream geneEG383172, 1700066C05Rik
Downstream geneLOC621365, LOC100039724, Ncam2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-219I20.bB6Ng01-219I20.g
ACCGA035353GA035354
length1,1261,184
definitionB6Ng01-219I20.b B6Ng01-219I20.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctaacacggatgtgtcatgtccatttgactaccctagaactttaa
aatctgttttctgaatatactgagtgaccttatctgatggcgctcactct
gcaactggcagatataatcagaacatgtaggaatccagggcaatgagaat
ggcttagatttttttgttatttaatttcctgttaatttttgttattataa
cattttcatttccttttgtaaatttaatgcaacgtatgcatggttgaaat
tgctggtctgttggactaattaatttttttacttgaatgactaaaagtcc
atgatcaccttgtactttactgcaggtcactataatccaattaaaaattc
acttgatccttaacattaacaatttacacaattaagtttttaattgctgc
agaaaaaaattgagattttagtcaagccagaaatcaactgttgaaaaata
gctctcatatattcaaaggggatgtatgtaatttttaagtatttctatgc
atgtatggctcaaatcctaaaatagattatatgaaccctgtgggcatata
cattgaattcttccctaatgaaatgcttattttgttgtcttctacttaga
gtgcacatctgacctattttatcagaaagaattttcccccaaatcaatgg
agagacaagcacacatatgctatgtgtgtttgtttatgtatagtgtgtaa
atatagaaatgcaaccccaaccccctgagacttacttgatgtctgtgctc
cttcggtttcagggctcaccgttttgtagtgggcaacaaattagattgcc
gaatcaacaaaaaggatgactctgcctttcttattactcatcagctgcca
gatgattcttgttcagggggcaaaacctctgagttttcctcattccacta
tgaagtctatgaatatgggcactgttctgctcttgtttatagagcagctg
ttttgcagcaaatttcctgctccttttctctaatatctttctggtacagt
tatgtgtatccctcaaatcttattttgagtttgatctagccatgagactg
gctgtgaaaatctgtcatcactgtatagagtcagttgtgtttctggtgtt
cgccccaattgcctgtaaagagagga

gaattcagaacttttcagctggggaacgagagtaccagtgagtacagctt
tacgaggtaagtctggtcttgaactttctaaggaaattcaagacagtcta
tcagaagtaaagtggaatatgtttggccttgaattttttctggtgttagg
agcccttttgttccttttcacatgttatcaagtgattaagatagggctga
aaattctagaggaaattcaggacaagcaatcagaagtaaagtggggagag
agagtaggaacaaagaggaaatatggtacacaaaataagtatacaggcct
ttccaagggtcttgaacccgaggaaaagttaaggttaggtaggaatacct
ggagagagattagaagaaaaagaggaaaaagggaaaagaagaaagatcaa
ttagcggaggtctctaggaaaaggagcctgtgctcatcgctggatgggct
cggggagccagctcttggtagctctgaatcagatgatgaattctcctctg
aagaaacagactgggaggaagaagcagctcattatgagaaaaaagggtac
cagccaggtaaagtgctagctaatcagttaaggaagccaaaagcggctgg
cgaaggccagtttgctgattggcctcagggcagtcggcttcaaggtccgc
cctatgcggagtccccgccctgcgtagtgcgtcagccctgcgcagagaga
caatgcgcagagaggcagtgcgcagactcattcattcccagagaggaaca
aaggaaaatacaacaggcatttccagtctttgaaggagccgagggtgggc
gtgtccacgctccggtagaatacttacagattaaagagcttgccgagtcg
gtccgtaaatatggaaccaatgctaattttaccttggtgcagttagacag
gcttgccggcatggcactaactcctgccgactggcaaacggttgtaaagc
cgctcttccctagtatgggcaaatatatggaatggagagctctttgggca
tgaactgcacagcgcagcccgagcaacgcagctgctttgactccagagca
gagaagaatgggacttttgacttggtacggtcaggagccttattctgctg
atcacaacctaccaatgggggagctatgcaagttcctccaccgctatagg
ccctggaagggcgcctcttccctggagcatgata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_80645484_80646622
seq2: B6Ng01-219I20.b_43_1168

seq1  GAATTCTAACACGGATGTGTCATGTCCATTTGACTACCCTAGAACTTTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAACACGGATGTGTCATGTCCATTTGACTACCCTAGAACTTTAA  50

seq1  AATCTGTTTTCTGAATATACTGAGTGACCTTATCTGATGGCGCTCACTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTGTTTTCTGAATATACTGAGTGACCTTATCTGATGGCGCTCACTCT  100

seq1  GCAACTGGCAGATATAATCAGAACATGTAGGAATCCAGGGCAATGAGAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACTGGCAGATATAATCAGAACATGTAGGAATCCAGGGCAATGAGAAT  150

seq1  GGCTTAGATTTTTTTGTTATTTAATTTCCTGTTAATTTTTGTTATTATAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTAGATTTTTTTGTTATTTAATTTCCTGTTAATTTTTGTTATTATAA  200

seq1  CATTTTCATTTCCTTTTGTAAATTTAATGCAACGTATGCATGGTTGAAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTCATTTCCTTTTGTAAATTTAATGCAACGTATGCATGGTTGAAAT  250

seq1  TGCTGGTCTGTTGGACTAATTAATTTTTTTACTTGAATGACTAAAAGTCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGGTCTGTTGGACTAATTAATTTTTTTACTTGAATGACTAAAAGTCC  300

seq1  ATGATCACCTTGTACTTTACTGCAGGTCACTATAATCCAATTAAAAATTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATCACCTTGTACTTTACTGCAGGTCACTATAATCCAATTAAAAATTC  350

seq1  ACTTGATCCTTAACATTAACAATTTACACAATTAAGTTTTTAATTGCTGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGATCCTTAACATTAACAATTTACACAATTAAGTTTTTAATTGCTGC  400

seq1  AGAAAAAAATTGAGATTTTAGTCAAGCCAGAAATCAACTGTTGAAAAATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAAAATTGAGATTTTAGTCAAGCCAGAAATCAACTGTTGAAAAATA  450

seq1  GCTCTCATATATTCAAAGGGGATGTATGTAATTTTTAAGTATTTCTATGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTCATATATTCAAAGGGGATGTATGTAATTTTTAAGTATTTCTATGC  500

seq1  ATGTATGGCTCAAATCCTAAAATAGATTATATGAACCCTGTGGGCATATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATGGCTCAAATCCTAAAATAGATTATATGAACCCTGTGGGCATATA  550

seq1  CATTGAATTCTTCCCTAATGAAATGCTTATTTTGTTGTCTTCTACTTAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGAATTCTTCCCTAATGAAATGCTTATTTTGTTGTCTTCTACTTAGA  600

seq1  GTGCACATCTGACCTATTTTATCAGAAAGAATTTTCCCCCAAATCAATGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCACATCTGACCTATTTTATCAGAAAGAATTTTCCCCCAAATCAATGG  650

seq1  AGAGACAAGCACACATATGCTATGTGTGTTTGTTTATGTATAGTGTGTAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGACAAGCACACATATGCTATGTGTGTTTGTTTATGTATAGTGTGTAA  700

seq1  ATATAGAAATGCAACCCCAACCCCCTGAGACTTACTTGATGTCTGTGCTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAGAAATGCAACCCCAACCCCCTGAGACTTACTTGATGTCTGTGCTC  750

seq1  CTTCGGTTTCAGGGCTCACCGTTTTGTAGTGGGCAACAAATTAGATTGCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCGGTTTCAGGGCTCACCGTTTTGTAGTGGGCAACAAATTAGATTGCC  800

seq1  GAATCAACAAAAAGGATGACTCTGCCTTTCTTATTACTCATCAGCTGCCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCAACAAAAAGGATGACTCTGCCTTTCTTATTACTCATCAGCTGCCA  850

seq1  GATGATTCTTGTTCAGGGGGCAAAACCTCTGAGTTTTCCTCATTCCACTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGATTCTTGTTCAGGGGGCAAAACCTCTGAGTTTTCCTCATTCCACTA  900

seq1  TGAAGTCTATGAATATGGGCACTGTTCTGCTCTTGTTTATAGAGCAGCTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGTCTATGAATATGGGCACTGTTCTGCTCTTGTTTATAGAGCAGCTG  950

seq1  TTTTGCAGCAAATTTCCTGCTCCTTTTCTTCTAATAATCTTTCTGGTACC  1000
      |||||||||||||||||||||||||||| |||||| |||||||||||| |
seq2  TTTTGCAGCAAATTTCCTGCTCCTTTTC-TCTAAT-ATCTTTCTGGTA-C  997

seq1  AGTTATGTGTTATTCCCTCAAAATCTTATTTTGGAGTTTGGATCTAGCCA  1050
      ||||||||||   |||||| |||||||||||| |||||| ||||||||||
seq2  AGTTATGTGT--ATCCCTC-AAATCTTATTTT-GAGTTT-GATCTAGCCA  1042

seq1  TTGAGACTGGGCTGTGAAAAATCTGTTCATCACTGTATAGAGTCCAGTTG  1100
       ||||||| ||||||| |||||||| ||||||||||||||||| ||||||
seq2  -TGAGACT-GGCTGTG-AAAATCTG-TCATCACTGTATAGAGT-CAGTTG  1087

seq1  TGTTTCCTGTGGTCGCCCCAATTTGCTGTAAAGAGAGGA  1139
      ||||||  ||| |||||||||||  ||||||||||||||
seq2  TGTTTCTGGTGTTCGCCCCAATTGCCTGTAAAGAGAGGA  1126


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