BAC Information

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BAC

Clone NameB6Ng01-219L11
Chromosome16 (Build37)
Map Location 57,805,263 - 57,981,178
singlet/doubletdoublet
Overlap geneLOC629342
Upstream geneTmem45a, LOC668026, LOC668036, 2310005G13Rik, Tomm70a, Nit2, Tbc1d23, Tmem30c, 2610528E23Rik, 4631422O05Rik, Col8a1, LOC435480
Downstream geneLOC100043477, Dcbld2, St3gal6, LOC100043480, Gm813, E330017A01Rik, Cpox, LOC100043790, Gpr15, Cldnd1, Olfr172, Olfr173, Olfr174, Olfr178, Olfr180, Olfr1563-ps1, Olfr181, Olfr182-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-219L11.bB6Ng01-219L11.g
ACCGA035474GA035475
length1,121718
definitionB6Ng01-219L11.b B6Ng01-219L11.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(57,980,062 - 57,981,178)(57,805,263 - 57,805,836)
sequence
gaattctctcttagttgaggaaaataccaaaaaaagaaaaatcttaaaat
gtattccaaggcaatgctaaaattcaaggagaggtggaaagtatatgaca
catccaacctaatatatagcacattaggatgtaatgcatcttaataacaa
actaatttgtactatgtacttatcctatatcaagctttgtgctaagttct
gtgtctaattaaacctgtgtattctgatgggaaaatgccattgttatcta
gatttagagataacaaaatttagagcgttaagcaacttaaacaaggtact
aaaagtttagtgcatgaataagccagaattcaatttcatgcagtctgacc
tttgaaccactacactattactcttatacccacagtaggcatttagtgaa
ctataagtaatggcagagaaagatctctgtggaatttcaccttggtacca
gagtactccttagagatgttgagctgagaccctagtgtgggaggctcttt
gggagaagcctgaatattttgtgttcttgaagtcaggtggctaatagtag
aaaatctcaaggagtactcccaaagcaaattcattgtgctaataagtgat
ttcaacaaggctacttgagaaaagaataaacacacaaaaaaatcaaaatt
atccctatataatgcaaaattgaaattaaataaattaagtttatattaaa
ataaattcattttgccttagtaaaagtgataaacttaaacatacacataa
taaaatgaaaatagaatttacatgttgaaaattactaaatttggatgaaa
taagtcaaaagcatgaataaagaaacttggtgtccacaaattcaatcaga
cactgattaaaaaatatttgagagggggaaaaaggtacatttgtgctaaa
ttttctttgttggtctctaatcaaacacaacaactactgccataacactt
gtgttagataaatcagcatgcataatgtagaagtattttaatttaaagta
tacaagagattacaagacttcaacgtacattttgtataagacttgagcat
ctttaagtttcatatccataagggtatagtaaactatattcatgacagaa
gaaagacatggtaagaacatg
gaattctctttaatcggcgattactgatgtggccacttgtgtttttgttt
gagggagtgaaaaatcctttaccgtctgtagtggctattcctggttgtca
acttgacaatatttggaatgaactacaatccggaattggaaggctcacca
gtgacccttatctggaggcttggagatccttatctggatcttggtttgaa
gatcttgagccatattggctatggattccagaagattgaatctccgagtt
taaggaacacacctttaatctgggctacgcctttcatctgggattaaagg
tgtggtggaacacacctttaatctgggctacaccttctgctggagacaat
ataaggacattggaagaagggagtctagctcttgctcttgctccttcgcc
tgcttgctgcgtgagactgagtaactgctagatccttggacttccattca
cagctgcgactgaaccattgttgggaattgggctgccgactgtaagtcat
caataaattcctttactatctagagactatccataagttctgtgactcta
gagaaccctgactaatacagaagtttggtaccaggagtggttctagagta
acagaaagtacaaggatgaatcttttaaaatactggaactggcttgttga
tccaccagcacttttcaactattgaaacctcttccagattctctccctcc
tgggagcttagagaattt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_57980062_57981178
seq2: B6Ng01-219L11.b_43_1163 (reverse)

seq1  -----------CATGTTCTTC-TCTGTTCATGGAATATTGGTTTTACTAT  38
                 |||||  ||| |||| |||| |||||| |  ||||||||
seq2  CATGTTCTTACCATGTCTTTCTTCTG-TCAT-GAATATAG--TTTACTAT  46

seq1  ACCC-TATGGATATGAAACTTTAAAGATGCTCAAGTCCCTTATACAAAAT  87
      |||| |||||||||||||| ||||||||||||||||  ||||||||||||
seq2  ACCCTTATGGATATGAAAC-TTAAAGATGCTCAAGT--CTTATACAAAAT  93

seq1  GTACGGTGAAGTCTTTGTATTCTCTTGTATACTTTAAATTAAATTACTTC  137
      ||||| ||||||| ||||| ||||||||||||||||||||||| ||||||
seq2  GTACGTTGAAGTC-TTGTAATCTCTTGTATACTTTAAATTAAAATACTTC  142

seq1  TACATTATGCATGCTGATTTATCTAACACAAGTGTTATGGCAGTAGTTGT  187
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATTATGCATGCTGATTTATCTAACACAAGTGTTATGGCAGTAGTTGT  192

seq1  TGTGTTTGATTTAGAGACCAACAAAGAAAATTTAGCACAAATGTACCTTT  237
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTTGA-TTAGAGACCAACAAAGAAAATTTAGCACAAATGTACCTTT  241

seq1  TTCCCCCTCTCAAATATTTTTTAATCAGTGTCTGATTGAATTTGTGGACA  287
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCCCTCTCAAATATTTTTTAATCAGTGTCTGATTGAATTTGTGGACA  291

seq1  CCAAGTTTCTTTATTCATGCTTTTGACTTATTTCATCCAAATTTAGTAAT  337
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGTTTCTTTATTCATGCTTTTGACTTATTTCATCCAAATTTAGTAAT  341

seq1  TTTCAACATGTAAATTCTATTTTCATTTTATTATGTGTATGTTTAAGTTT  387
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAACATGTAAATTCTATTTTCATTTTATTATGTGTATGTTTAAGTTT  391

seq1  ATCACTTTTACTAAGGCAAAATGAATTTATTTTAATATAAACTTAATTTA  437
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACTTTTACTAAGGCAAAATGAATTTATTTTAATATAAACTTAATTTA  441

seq1  TTTAATTTCAATTTTGCATTATATAGGGATAATTTTGATTTTTTTGTGTG  487
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATTTCAATTTTGCATTATATAGGGATAATTTTGATTTTTTTGTGTG  491

seq1  TTTATTCTTTTCTCAAGTAGCCTTGTTGAAATCACTTATTAGCACAATGA  537
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTCTTTTCTCAAGTAGCCTTGTTGAAATCACTTATTAGCACAATGA  541

seq1  ATTTGCTTTGGGAGTACTCCTTGAGATTTTCTACTATTAGCCACCTGACT  587
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGCTTTGGGAGTACTCCTTGAGATTTTCTACTATTAGCCACCTGACT  591

seq1  TCAAGAACACAAAATATTCAGGCTTCTCCCAAAGAGCCTCCCACACTAGG  637
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGAACACAAAATATTCAGGCTTCTCCCAAAGAGCCTCCCACACTAGG  641

seq1  GTCTCAGCTCAACATCTCTAAGGAGTACTCTGGTACCAAGGTGAAATTCC  687
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCAGCTCAACATCTCTAAGGAGTACTCTGGTACCAAGGTGAAATTCC  691

seq1  ACAGAGATCTTTCTCTGCCATTACTTATAGTTCACTAAATGCCTACTGTG  737
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGATCTTTCTCTGCCATTACTTATAGTTCACTAAATGCCTACTGTG  741

seq1  GGTATAAGAGTAATAGTGTAGTGGTTCAAAGGTCAGACTGCATGAAATTG  787
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATAAGAGTAATAGTGTAGTGGTTCAAAGGTCAGACTGCATGAAATTG  791

seq1  AATTCTGGCTTATTCATGCACTAAACTTTTAGTACCTTGTTTAAGTTGCT  837
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTGGCTTATTCATGCACTAAACTTTTAGTACCTTGTTTAAGTTGCT  841

seq1  TAACGCTCTAAATTTTGTTATCTCTAAATCTAGATAACAATGGCATTTTC  887
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACGCTCTAAATTTTGTTATCTCTAAATCTAGATAACAATGGCATTTTC  891

seq1  CCATCAGAATACACAGGTTTAATTAGACACAGAACTTAGCACAAAGCTTG  937
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCAGAATACACAGGTTTAATTAGACACAGAACTTAGCACAAAGCTTG  941

seq1  ATATAGGATAAGTACATAGTACAAATTAGTTTGTTATTAAGATGCATTAC  987
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAGGATAAGTACATAGTACAAATTAGTTTGTTATTAAGATGCATTAC  991

seq1  ATCCTAATGTGCTATATATTAGGTTGGATGTGTCATATACTTTCCACCTC  1037
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTAATGTGCTATATATTAGGTTGGATGTGTCATATACTTTCCACCTC  1041

seq1  TCCTTGAATTTTAGCATTGCCTTGGAATACATTTTAAGATTTTTCTTTTT  1087
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTGAATTTTAGCATTGCCTTGGAATACATTTTAAGATTTTTCTTTTT  1091

seq1  TTGGTATTTTCCTCAACTAAGAGAGAATTC  1117
      ||||||||||||||||||||||||||||||
seq2  TTGGTATTTTCCTCAACTAAGAGAGAATTC  1121

seq1: chr16_57805263_57805836
seq2: B6Ng01-219L11.g_71_645

seq1  GAATTCTCTTTAAT-GGCGATTACTGATGTGGCCACTTGTGTTTTTGTTT  49
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTTTAATCGGCGATTACTGATGTGGCCACTTGTGTTTTTGTTT  50

seq1  GAGGGAGTGAAAAATCCTTTACCGTCTGTAGTGGCTATTCCTGGTTGTCA  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGAGTGAAAAATCCTTTACCGTCTGTAGTGGCTATTCCTGGTTGTCA  100

seq1  ACTTGACAATATTTGGAATGAACTACAATCCGGAATTGGAAGGCTCACCA  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGACAATATTTGGAATGAACTACAATCCGGAATTGGAAGGCTCACCA  150

seq1  GTGACCCTTATCTGGAGGCTTGGAGATCCTTATCTGGATCTTGGTTTGAA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACCCTTATCTGGAGGCTTGGAGATCCTTATCTGGATCTTGGTTTGAA  200

seq1  GATCTTGAGCCATATTGGCTATGGATTCCAGAAGATTGAATCTCCGAGTT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTTGAGCCATATTGGCTATGGATTCCAGAAGATTGAATCTCCGAGTT  250

seq1  TAAGGAACACACCTTTAATCTGGGCTACGCCTTTCATCTGGGATTAAAGG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGAACACACCTTTAATCTGGGCTACGCCTTTCATCTGGGATTAAAGG  300

seq1  TGTGGTGGAACACACCTTTAATCTGGGCTACACCTTCTGCTGGAGACAAT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGTGGAACACACCTTTAATCTGGGCTACACCTTCTGCTGGAGACAAT  350

seq1  ATAAGGACATTGGAAGAAGGGAGTCTAGCTCTTGCTCTTGCTCCTTCGCC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGGACATTGGAAGAAGGGAGTCTAGCTCTTGCTCTTGCTCCTTCGCC  400

seq1  TGCTTGCTGCGTGAGACTGAGTAACTGCTAGATCCTTGGACTTCCATTCA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTGCTGCGTGAGACTGAGTAACTGCTAGATCCTTGGACTTCCATTCA  450

seq1  CAGCTGCGACTGAACCATTGTTGGGAATTGGGCTGCCGACTGTAAGTCAT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTGCGACTGAACCATTGTTGGGAATTGGGCTGCCGACTGTAAGTCAT  500

seq1  CAATAAATTCCTTTACTATCTAGAGACTATCCATAAGTTCTGTGACTCTA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAAATTCCTTTACTATCTAGAGACTATCCATAAGTTCTGTGACTCTA  550

seq1  GAGAACCCTGACTAATACAGAAGTT  574
      |||||||||||||||||||||||||
seq2  GAGAACCCTGACTAATACAGAAGTT  575